Wall clock time and date at job start Mon Mar 30 2020 00:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99940 * 2 1 4 4 H 1.48497 * 109.47314 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47485 * 300.00167 * 3 2 1 6 6 H 1.48507 * 109.47044 * 60.00107 * 3 2 1 7 7 C 1.37874 * 120.00319 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00428 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99572 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.47086 * 179.97438 * 9 7 2 11 11 C 1.47914 * 110.99857 * 297.97054 * 10 9 7 12 12 C 1.50805 * 108.49547 * 153.78899 * 11 10 9 13 13 C 1.53695 * 112.09916 * 92.55206 * 12 11 10 14 14 N 1.48064 * 112.47258 * 318.54918 * 13 12 11 15 15 C 1.46897 * 111.00080 * 192.20014 * 14 13 12 16 16 C 1.54267 * 110.03334 * 308.74576 * 15 14 13 17 17 C 1.54970 * 104.15885 * 217.13823 * 16 15 14 18 18 C 1.54896 * 102.77591 * 37.88435 * 17 16 15 19 19 C 1.53875 * 110.03243 * 191.52584 * 15 14 13 20 20 C 1.44577 * 113.85605 * 318.32018 * 14 13 12 21 21 C 1.40011 * 111.00120 * 170.00572 * 10 9 7 22 22 H 0.97006 * 120.00256 * 359.97438 * 1 2 3 23 23 H 1.08993 * 109.47281 * 300.00390 * 9 7 2 24 24 H 1.09004 * 109.46870 * 60.00569 * 9 7 2 25 25 H 1.08999 * 109.63622 * 273.48751 * 11 10 9 26 26 H 1.09005 * 109.63380 * 34.08693 * 11 10 9 27 27 H 1.08998 * 108.95768 * 331.87181 * 12 11 10 28 28 H 1.08999 * 108.88402 * 213.17622 * 12 11 10 29 29 H 1.09006 * 108.87776 * 197.77727 * 13 12 11 30 30 H 1.09002 * 108.80733 * 79.27130 * 13 12 11 31 31 H 1.09005 * 110.01680 * 70.13723 * 15 14 13 32 32 H 1.08996 * 110.48291 * 335.77960 * 16 15 14 33 33 H 1.08995 * 110.49013 * 98.42904 * 16 15 14 34 34 H 1.09004 * 110.71529 * 279.57481 * 17 16 15 35 35 H 1.08997 * 110.92157 * 156.29320 * 17 16 15 36 36 H 1.09000 * 110.48212 * 203.40690 * 18 17 16 37 37 H 1.08994 * 110.59556 * 80.82301 * 18 17 16 38 38 H 1.09009 * 110.03177 * 238.57176 * 19 15 14 39 39 H 1.09006 * 110.03092 * 359.97438 * 19 15 14 40 40 H 1.09002 * 109.57359 * 334.42258 * 20 14 13 41 41 H 1.08990 * 109.57416 * 214.03930 * 20 14 13 42 42 H 1.09000 * 108.95551 * 308.76444 * 21 10 9 43 43 H 1.08997 * 108.96110 * 67.50589 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2056 -3.6157 -0.0018 11 6 3.0414 -3.5971 -1.2220 12 6 4.3508 -4.2796 -0.9154 13 6 4.3160 -5.7776 -1.2573 14 7 3.0407 -6.4185 -0.8634 15 6 3.1435 -7.8822 -0.9333 16 6 3.6959 -8.3081 -2.3092 17 6 2.9190 -9.6065 -2.6443 18 6 1.4984 -9.3041 -2.1061 19 6 1.7471 -8.5155 -0.8038 20 6 2.5476 -5.9948 0.4279 21 6 1.5534 -4.8337 0.2250 22 1 -0.4851 0.8401 0.0004 23 1 0.6247 -2.5570 0.8896 24 1 0.6241 -2.5566 -0.8904 25 1 2.5302 -4.1293 -2.0242 26 1 3.2274 -2.5661 -1.5229 27 1 4.5706 -4.1635 0.1458 28 1 5.1413 -3.8025 -1.4947 29 1 5.1359 -6.2764 -0.7404 30 1 4.4532 -5.8961 -2.3321 31 1 3.7947 -8.2488 -0.1397 32 1 3.4943 -7.5398 -3.0556 33 1 4.7654 -8.5083 -2.2456 34 1 3.3545 -10.4610 -2.1263 35 1 2.8958 -9.7795 -3.7202 36 1 0.9652 -10.2311 -1.8948 37 1 0.9395 -8.6976 -2.8186 38 1 1.7208 -9.1900 0.0521 39 1 0.9931 -7.7367 -0.6888 40 1 3.3811 -5.6582 1.0445 41 1 2.0420 -6.8273 0.9169 42 1 0.9304 -4.7414 1.1147 43 1 0.9170 -5.0594 -0.6306 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336496974.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:00:36 Heat of formation + Delta-G solvation = 2.692473 kcal Electronic energy + Delta-G solvation = -19668.579996 eV Core-core repulsion = 16941.082447 eV Total energy + Delta-G solvation = -2727.497550 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.53275 -37.44956 -34.70902 -32.45397 -32.06601 -29.19922 -28.57269 -26.92378 -25.38706 -24.80805 -22.05681 -20.67270 -20.30398 -19.66705 -19.01003 -16.55717 -16.23828 -15.75028 -15.12623 -14.82570 -14.37644 -14.29089 -13.83736 -13.41267 -13.28880 -12.77881 -12.46467 -12.06719 -11.96048 -11.43222 -11.37159 -11.23285 -11.07803 -11.01832 -10.88325 -10.72936 -10.65950 -10.53177 -10.47332 -10.35073 -10.29446 -9.82777 -9.63923 -9.09524 -8.39042 -7.88254 -6.97752 -5.97472 -3.98176 3.33636 3.40997 3.45768 4.04434 4.47340 4.52878 4.61170 4.89525 5.05502 5.31322 5.34385 5.37926 5.39575 5.46250 5.48834 5.58452 5.64665 5.70036 5.73550 5.82851 5.84236 5.89300 5.97975 6.01268 6.11516 6.17872 6.26990 6.28935 6.38022 6.42583 6.52368 6.68178 6.87709 6.94943 7.40484 7.44124 7.52079 7.56900 7.91372 8.27465 8.36493 8.83711 9.10412 9.65845 11.13384 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.041718 B = 0.004676 C = 0.004443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.005222 B = 5987.043007 C = 6300.081158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.054 3.946 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.504 4.504 8 H 0.064 0.936 9 C 0.198 3.802 10 N -0.555 5.555 11 C 0.077 3.923 12 C -0.119 4.119 13 C 0.067 3.933 14 N -0.543 5.543 15 C 0.086 3.914 16 C -0.119 4.119 17 C -0.123 4.123 18 C -0.120 4.120 19 C -0.120 4.120 20 C 0.062 3.938 21 C 0.086 3.914 22 H 0.260 0.740 23 H 0.027 0.973 24 H -0.010 1.010 25 H 0.031 0.969 26 H 0.083 0.917 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.023 0.977 30 H 0.066 0.934 31 H 0.036 0.964 32 H 0.078 0.922 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.078 0.922 40 H 0.047 0.953 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.421 -17.524 -3.414 18.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.147 4.147 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.543 4.543 8 H 0.082 0.918 9 C 0.074 3.926 10 N -0.280 5.280 11 C -0.050 4.050 12 C -0.158 4.158 13 C -0.060 4.060 14 N -0.269 5.269 15 C -0.022 4.022 16 C -0.157 4.157 17 C -0.161 4.161 18 C -0.157 4.157 19 C -0.158 4.158 20 C -0.066 4.066 21 C -0.046 4.046 22 H 0.069 0.931 23 H 0.045 0.955 24 H 0.007 0.993 25 H 0.049 0.951 26 H 0.101 0.899 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.041 0.959 30 H 0.084 0.916 31 H 0.053 0.947 32 H 0.097 0.903 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.097 0.903 40 H 0.066 0.934 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 6.240 -17.196 -3.345 18.597 hybrid contribution 0.432 0.575 0.030 0.720 sum 6.672 -16.622 -3.315 18.215 Atomic orbital electron populations 1.69974 1.06054 1.26527 1.51354 1.24990 0.94825 0.99243 0.95613 0.86483 0.80090 0.83637 0.77446 1.19702 1.21171 1.21097 1.21243 0.93496 0.90063 1.49482 0.91831 1.19648 0.89897 0.87228 0.95850 1.59258 1.27797 1.03592 1.37337 1.21574 0.92305 1.00406 0.90718 1.21525 0.98885 0.93034 1.02334 1.22379 0.88668 0.95028 0.99930 1.60902 1.30029 1.05039 1.30898 1.22256 0.95943 0.87575 0.96435 1.22496 0.98665 0.97433 0.97093 1.22470 0.95831 0.97345 1.00476 1.22291 0.96757 0.99419 0.97270 1.22250 0.97103 0.99105 0.97315 1.22012 0.98360 0.97280 0.88985 1.20820 0.94479 0.89859 0.99411 0.93072 0.95512 0.99260 0.95050 0.89909 0.91245 0.92009 0.95877 0.91563 0.94654 0.90341 0.92237 0.91924 0.91733 0.92136 0.91437 0.92313 0.90332 0.93429 0.91820 0.92186 0.96647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.06 13.29 55.43 0.74 -26.33 16 2 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.50 -14.28 8.13 -34.44 -0.28 -14.56 16 8 H 0.06 1.78 7.14 -52.49 -0.37 1.41 16 9 C 0.20 5.29 4.72 -4.97 -0.02 5.26 16 10 N -0.56 -12.28 4.09 -241.20 -0.99 -13.26 16 11 C 0.08 1.56 5.08 -4.37 -0.02 1.54 16 12 C -0.12 -1.96 5.36 -27.47 -0.15 -2.11 16 13 C 0.07 0.95 4.76 -2.82 -0.01 0.94 16 14 N -0.54 -7.92 3.74 -224.99 -0.84 -8.76 16 15 C 0.09 1.04 2.57 -66.60 -0.17 0.87 16 16 C -0.12 -1.27 5.34 -25.03 -0.13 -1.40 16 17 C -0.12 -1.13 6.91 -24.69 -0.17 -1.30 16 18 C -0.12 -1.19 6.83 -25.07 -0.17 -1.36 16 19 C -0.12 -1.35 5.52 -25.62 -0.14 -1.49 16 20 C 0.06 0.98 4.86 -4.44 -0.02 0.95 16 21 C 0.09 1.64 5.04 -6.75 -0.03 1.61 16 22 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 23 H 0.03 0.76 7.85 -51.93 -0.41 0.35 16 24 H -0.01 -0.30 8.14 -51.93 -0.42 -0.72 16 25 H 0.03 0.64 7.57 -51.93 -0.39 0.25 16 26 H 0.08 1.84 6.33 -51.93 -0.33 1.51 16 27 H 0.07 1.23 7.23 -51.93 -0.38 0.85 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.02 0.31 8.03 -51.93 -0.42 -0.11 16 30 H 0.07 0.88 6.88 -51.93 -0.36 0.53 16 31 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.93 7.15 -51.93 -0.37 0.56 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.60 8.14 -51.92 -0.42 0.17 16 39 H 0.08 1.02 7.18 -51.93 -0.37 0.64 16 40 H 0.05 0.79 6.93 -51.93 -0.36 0.43 16 41 H 0.06 0.89 6.51 -51.93 -0.34 0.55 16 42 H 0.06 1.16 7.82 -51.93 -0.41 0.75 16 43 H 0.02 0.32 8.06 -51.93 -0.42 -0.10 16 LS Contribution 318.83 15.07 4.80 4.80 Total: -1.00 -29.45 318.83 -10.59 -40.05 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -7.86 Total: -3.69 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: -1.43 Total: -9.60 kcal Atomic # 7 Polarization: -47.26 SS G_CDS: -1.09 Total: -48.35 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.45 -10.59 -40.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336496974.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.740 kcal (2) G-P(sol) polarization free energy of solvation -29.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds