Wall clock time and date at job start Mon Mar 30 2020 00:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99940 * 2 1 4 4 H 1.48497 * 109.47314 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47485 * 300.00167 * 3 2 1 6 6 H 1.48507 * 109.47044 * 60.00107 * 3 2 1 7 7 C 1.37874 * 120.00319 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00428 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99572 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.47086 * 179.97438 * 9 7 2 11 11 C 1.47914 * 110.99857 * 297.97054 * 10 9 7 12 12 C 1.50805 * 108.49547 * 153.78899 * 11 10 9 13 13 C 1.53695 * 112.09916 * 92.55206 * 12 11 10 14 14 N 1.48064 * 112.47258 * 318.54918 * 13 12 11 15 15 C 1.46897 * 111.00080 * 192.20014 * 14 13 12 16 16 C 1.54267 * 110.03334 * 308.74576 * 15 14 13 17 17 C 1.54970 * 104.15885 * 217.13823 * 16 15 14 18 18 C 1.54896 * 102.77591 * 37.88435 * 17 16 15 19 19 C 1.53875 * 110.03243 * 191.52584 * 15 14 13 20 20 C 1.44577 * 113.85605 * 318.32018 * 14 13 12 21 21 C 1.40011 * 111.00120 * 170.00572 * 10 9 7 22 22 H 0.97006 * 120.00256 * 359.97438 * 1 2 3 23 23 H 1.08993 * 109.47281 * 300.00390 * 9 7 2 24 24 H 1.09004 * 109.46870 * 60.00569 * 9 7 2 25 25 H 1.08999 * 109.63622 * 273.48751 * 11 10 9 26 26 H 1.09005 * 109.63380 * 34.08693 * 11 10 9 27 27 H 1.08998 * 108.95768 * 331.87181 * 12 11 10 28 28 H 1.08999 * 108.88402 * 213.17622 * 12 11 10 29 29 H 1.09006 * 108.87776 * 197.77727 * 13 12 11 30 30 H 1.09002 * 108.80733 * 79.27130 * 13 12 11 31 31 H 1.09005 * 110.01680 * 70.13723 * 15 14 13 32 32 H 1.08996 * 110.48291 * 335.77960 * 16 15 14 33 33 H 1.08995 * 110.49013 * 98.42904 * 16 15 14 34 34 H 1.09004 * 110.71529 * 279.57481 * 17 16 15 35 35 H 1.08997 * 110.92157 * 156.29320 * 17 16 15 36 36 H 1.09000 * 110.48212 * 203.40690 * 18 17 16 37 37 H 1.08994 * 110.59556 * 80.82301 * 18 17 16 38 38 H 1.09009 * 110.03177 * 238.57176 * 19 15 14 39 39 H 1.09006 * 110.03092 * 359.97438 * 19 15 14 40 40 H 1.09002 * 109.57359 * 334.42258 * 20 14 13 41 41 H 1.08990 * 109.57416 * 214.03930 * 20 14 13 42 42 H 1.09000 * 108.95551 * 308.76444 * 21 10 9 43 43 H 1.08997 * 108.96110 * 67.50589 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2056 -3.6157 -0.0018 11 6 3.0414 -3.5971 -1.2220 12 6 4.3508 -4.2796 -0.9154 13 6 4.3160 -5.7776 -1.2573 14 7 3.0407 -6.4185 -0.8634 15 6 3.1435 -7.8822 -0.9333 16 6 3.6959 -8.3081 -2.3092 17 6 2.9190 -9.6065 -2.6443 18 6 1.4984 -9.3041 -2.1061 19 6 1.7471 -8.5155 -0.8038 20 6 2.5476 -5.9948 0.4279 21 6 1.5534 -4.8337 0.2250 22 1 -0.4851 0.8401 0.0004 23 1 0.6247 -2.5570 0.8896 24 1 0.6241 -2.5566 -0.8904 25 1 2.5302 -4.1293 -2.0242 26 1 3.2274 -2.5661 -1.5229 27 1 4.5706 -4.1635 0.1458 28 1 5.1413 -3.8025 -1.4947 29 1 5.1359 -6.2764 -0.7404 30 1 4.4532 -5.8961 -2.3321 31 1 3.7947 -8.2488 -0.1397 32 1 3.4943 -7.5398 -3.0556 33 1 4.7654 -8.5083 -2.2456 34 1 3.3545 -10.4610 -2.1263 35 1 2.8958 -9.7795 -3.7202 36 1 0.9652 -10.2311 -1.8948 37 1 0.9395 -8.6976 -2.8186 38 1 1.7208 -9.1900 0.0521 39 1 0.9931 -7.7367 -0.6888 40 1 3.3811 -5.6582 1.0445 41 1 2.0420 -6.8273 0.9169 42 1 0.9304 -4.7414 1.1147 43 1 0.9170 -5.0594 -0.6306 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336496974.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:00:36 Heat of formation + Delta-G solvation = -15.391583 kcal Electronic energy + Delta-G solvation = -19669.364180 eV Core-core repulsion = 16941.082447 eV Total energy + Delta-G solvation = -2728.281733 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.75406 -38.77900 -36.08911 -34.53866 -33.43395 -30.63273 -29.61027 -28.41460 -26.93842 -26.17274 -23.97918 -21.71612 -21.60589 -20.95794 -20.13873 -18.44432 -17.70999 -16.83845 -16.59823 -16.45553 -15.86835 -15.64738 -15.30022 -14.72535 -14.41125 -14.20273 -13.95647 -13.82305 -13.30889 -13.12172 -12.71886 -12.65824 -12.57772 -12.27324 -12.14524 -12.12837 -11.89918 -11.78796 -11.66027 -11.55723 -11.45742 -11.36632 -11.28288 -11.15115 -10.61583 -9.02652 -8.85471 -8.18997 -6.29207 1.41437 1.41996 1.55858 2.41456 2.92930 3.13078 3.38674 3.68482 3.78920 4.03528 4.07728 4.18554 4.27778 4.32842 4.51803 4.53263 4.55927 4.63659 4.67035 4.72559 4.80084 4.83666 4.87006 4.95034 5.02016 5.04394 5.10214 5.11479 5.21494 5.22605 5.25561 5.31644 5.36846 5.40343 5.50667 5.53259 5.68737 6.10757 6.26984 6.39472 6.47288 6.87807 6.97504 7.40638 8.92484 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.041718 B = 0.004676 C = 0.004443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.005222 B = 5987.043007 C = 6300.081158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.000 4.000 3 Si 0.971 3.029 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.519 4.519 8 H 0.065 0.935 9 C 0.213 3.787 10 N -0.555 5.555 11 C 0.083 3.917 12 C -0.112 4.112 13 C 0.072 3.928 14 N -0.559 5.559 15 C 0.085 3.915 16 C -0.117 4.117 17 C -0.117 4.117 18 C -0.119 4.119 19 C -0.121 4.121 20 C 0.080 3.920 21 C 0.083 3.917 22 H 0.264 0.736 23 H 0.000 1.000 24 H -0.045 1.045 25 H 0.025 0.975 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.082 0.918 29 H 0.042 0.958 30 H 0.078 0.922 31 H 0.043 0.957 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.054 0.946 38 H 0.072 0.928 39 H 0.055 0.945 40 H 0.043 0.957 41 H 0.084 0.916 42 H 0.052 0.948 43 H 0.000 1.000 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.528 -18.781 -3.651 20.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.198 4.198 3 Si 0.795 3.205 4 H -0.185 1.185 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.557 4.557 8 H 0.083 0.917 9 C 0.087 3.913 10 N -0.279 5.279 11 C -0.044 4.044 12 C -0.150 4.150 13 C -0.055 4.055 14 N -0.284 5.284 15 C -0.023 4.023 16 C -0.155 4.155 17 C -0.155 4.155 18 C -0.157 4.157 19 C -0.159 4.159 20 C -0.049 4.049 21 C -0.048 4.048 22 H 0.073 0.927 23 H 0.018 0.982 24 H -0.027 1.027 25 H 0.043 0.957 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.101 0.899 29 H 0.060 0.940 30 H 0.096 0.904 31 H 0.061 0.939 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.074 0.926 40 H 0.061 0.939 41 H 0.102 0.898 42 H 0.070 0.930 43 H 0.018 0.982 Dipole moment (debyes) X Y Z Total from point charges 8.365 -18.485 -3.590 20.605 hybrid contribution -0.289 0.923 0.085 0.971 sum 8.076 -17.562 -3.505 19.645 Atomic orbital electron populations 1.70109 1.07851 1.27793 1.52014 1.25944 0.95720 1.03283 0.94839 0.85311 0.79017 0.78463 0.77678 1.18549 1.20435 1.20435 1.21498 0.93620 0.90941 1.49661 0.91699 1.19319 0.89991 0.89117 0.92888 1.59296 1.26721 1.03475 1.38456 1.21540 0.93830 0.99381 0.89692 1.21430 0.96824 0.94773 1.01957 1.22333 0.89050 0.93171 1.00898 1.60827 1.30618 1.06954 1.30045 1.22370 0.96616 0.85645 0.97655 1.22479 0.99625 0.97725 0.95624 1.22458 0.94779 0.97012 1.01223 1.22288 0.97519 0.99631 0.96264 1.22261 0.96032 0.98861 0.98709 1.21752 0.97250 0.96145 0.89779 1.20922 0.95429 0.90104 0.98307 0.92739 0.98225 1.02738 0.95678 0.92428 0.92350 0.89941 0.93991 0.90358 0.93881 0.91744 0.90904 0.90479 0.90860 0.90649 0.92760 0.90903 0.92602 0.93900 0.89783 0.92970 0.98209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.84 13.29 21.45 0.28 -57.55 16 2 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 3 Si 0.97 44.98 29.54 68.60 2.03 47.01 16 4 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 7 C -0.52 -30.19 8.13 25.60 0.21 -29.98 16 8 H 0.06 3.68 7.14 -2.91 -0.02 3.66 16 9 C 0.21 11.95 4.72 85.56 0.40 12.35 16 10 N -0.56 -25.40 4.09 -917.01 -3.75 -29.15 16 11 C 0.08 3.39 5.08 85.39 0.43 3.82 16 12 C -0.11 -3.53 5.36 30.12 0.16 -3.37 16 13 C 0.07 1.88 4.76 86.31 0.41 2.29 16 14 N -0.56 -15.50 3.74 -865.74 -3.23 -18.73 16 15 C 0.08 1.85 2.57 45.64 0.12 1.97 16 16 C -0.12 -2.16 5.34 31.70 0.17 -2.00 16 17 C -0.12 -1.80 6.91 31.92 0.22 -1.58 16 18 C -0.12 -2.13 6.83 31.67 0.22 -1.91 16 19 C -0.12 -2.51 5.52 31.32 0.17 -2.33 16 20 C 0.08 2.44 4.86 87.15 0.42 2.86 16 21 C 0.08 3.30 5.04 87.95 0.44 3.74 16 22 H 0.26 15.22 8.31 -92.70 -0.77 14.45 16 23 H 0.00 -0.02 7.85 -2.39 -0.02 -0.04 16 24 H -0.05 -2.78 8.14 -2.39 -0.02 -2.80 16 25 H 0.02 1.04 7.57 -2.39 -0.02 1.03 16 26 H 0.06 2.63 6.33 -2.38 -0.02 2.61 16 27 H 0.06 1.99 7.23 -2.39 -0.02 1.97 16 28 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.04 0.97 8.03 -2.38 -0.02 0.95 16 30 H 0.08 1.88 6.88 -2.39 -0.02 1.87 16 31 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 32 H 0.06 1.39 7.15 -2.39 -0.02 1.37 16 33 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 39 H 0.06 1.42 7.18 -2.38 -0.02 1.40 16 40 H 0.04 1.37 6.93 -2.39 -0.02 1.35 16 41 H 0.08 2.23 6.51 -2.39 -0.02 2.21 16 42 H 0.05 2.11 7.82 -2.39 -0.02 2.09 16 43 H 0.00 0.00 8.06 -2.39 -0.02 -0.02 16 Total: -1.00 -64.97 318.83 0.12 -64.85 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: 0.95 Total: 7.26 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: 3.84 Total: -13.68 kcal Atomic # 7 Polarization: -98.74 SS G_CDS: -6.70 Total: -105.44 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -64.97 0.12 -64.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336496974.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.458 kcal (2) G-P(sol) polarization free energy of solvation -64.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds