Wall clock time and date at job start Sun Mar 29 2020 22:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46906 * 109.47285 * 2 1 4 4 C 1.46898 * 111.00091 * 198.30856 * 3 2 1 5 5 C 1.50692 * 109.47323 * 66.04540 * 4 3 2 6 6 H 1.08007 * 120.00037 * 359.97438 * 5 4 3 7 7 C 1.37882 * 120.00213 * 180.02562 * 5 4 3 8 8 N 1.31512 * 119.99834 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99971 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47161 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.46767 * 119.99694 * 9 7 5 12 12 H 1.48494 * 109.46764 * 239.99724 * 9 7 5 13 13 C 1.46901 * 111.00062 * 74.35006 * 3 2 1 14 14 H 1.09004 * 110.43831 * 307.22545 * 13 3 2 15 15 C 1.54631 * 110.48559 * 69.76487 * 13 3 2 16 16 C 1.54472 * 101.76533 * 93.87855 * 15 13 3 17 17 N 1.46763 * 105.47550 * 25.42030 * 16 15 13 18 18 C 1.46493 * 124.35392 * 162.98438 * 17 16 15 19 19 C 1.53003 * 117.50048 * 188.74546 * 18 17 16 20 20 C 1.53000 * 117.50217 * 120.08303 * 18 17 16 21 21 C 1.34425 * 111.29687 * 342.97773 * 17 16 15 22 22 O 1.21275 * 124.93997 * 180.44149 * 21 17 16 23 23 H 1.08999 * 109.46946 * 54.87676 * 1 2 3 24 24 H 1.08998 * 109.47224 * 174.88139 * 1 2 3 25 25 H 1.09007 * 109.46999 * 294.87949 * 1 2 3 26 26 H 1.08994 * 109.47241 * 240.00138 * 2 1 3 27 27 H 1.08998 * 109.47596 * 119.99789 * 2 1 3 28 28 H 1.09004 * 109.46912 * 186.04900 * 4 3 2 29 29 H 1.08998 * 109.47079 * 306.04119 * 4 3 2 30 30 H 0.96992 * 120.00141 * 179.97438 * 8 7 5 31 31 H 1.09003 * 110.97036 * 212.00123 * 15 13 3 32 32 H 1.09008 * 110.96627 * 335.76169 * 15 13 3 33 33 H 1.09005 * 110.24817 * 144.41634 * 16 15 13 34 34 H 1.09003 * 110.25027 * 266.41853 * 16 15 13 35 35 H 1.09006 * 115.54927 * 334.41477 * 18 17 16 36 36 H 1.08996 * 117.49533 * 359.97438 * 19 18 17 37 37 H 1.08999 * 117.49481 * 145.01631 * 19 18 17 38 38 H 1.09003 * 117.49813 * 214.98133 * 20 18 17 39 39 H 1.09005 * 117.49611 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4227 1.4473 -0.4308 5 6 3.5235 1.0315 -1.8757 6 1 2.6342 0.7487 -2.4196 7 6 4.7511 1.0109 -2.5032 8 7 5.8339 1.3548 -1.8409 9 14 4.8760 0.4947 -4.2941 10 1 3.5240 0.1580 -4.8077 11 1 5.4456 1.6101 -5.0921 12 1 5.7579 -0.6948 -4.4060 13 6 1.8464 2.0047 1.3206 14 1 0.8145 1.9024 1.6566 15 6 2.8149 1.3719 2.3466 16 6 4.0187 2.3376 2.2806 17 7 3.4676 3.6200 1.8273 18 6 4.1553 4.9071 1.9560 19 6 3.3594 6.1701 1.6207 20 6 4.4544 5.6800 0.6698 21 6 2.2506 3.4619 1.2788 22 8 1.5751 4.3571 0.8171 23 1 -0.3633 0.5913 -0.8405 24 1 -0.3633 -1.0235 -0.0917 25 1 -0.3633 0.4324 0.9324 26 1 1.8933 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 3.7920 2.4669 -0.3195 29 1 4.0216 0.7750 0.1835 30 1 6.6976 1.3400 -2.2821 31 1 2.3755 1.3636 3.3441 32 1 3.1042 0.3663 2.0411 33 1 4.4682 2.4480 3.2675 34 1 4.7575 1.9714 1.5677 35 1 4.8851 4.9716 2.7631 36 1 2.3242 6.0432 1.3040 37 1 3.5658 7.0654 2.2070 38 1 5.3807 6.2532 0.6310 39 1 4.1398 5.2305 -0.2721 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336681619.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:37 Heat of formation + Delta-G solvation = 11.697323 kcal Electronic energy + Delta-G solvation = -19940.350192 eV Core-core repulsion = 17077.410027 eV Total energy + Delta-G solvation = -2862.940165 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.54487 -37.31246 -36.10039 -34.65723 -32.67740 -30.33565 -29.28620 -27.49051 -25.39852 -22.99135 -22.41897 -22.04118 -21.81004 -19.73393 -18.34449 -17.05042 -16.53706 -15.53366 -15.12064 -14.93773 -14.41311 -14.07906 -13.69291 -13.59806 -12.97874 -12.89120 -12.70589 -12.30602 -12.16182 -12.02283 -11.54923 -11.25890 -11.16714 -10.99989 -10.94469 -10.70565 -10.56102 -10.46004 -10.15862 -10.08519 -9.85538 -9.23826 -8.93606 -8.46670 -8.06257 -7.29368 -6.06296 -4.06491 3.00508 3.29123 3.30803 3.37311 3.42473 4.21109 4.40822 4.70057 4.83101 5.02638 5.13220 5.21269 5.27061 5.30294 5.36546 5.50223 5.67386 5.76984 5.88702 5.91426 5.95970 6.01962 6.04062 6.19593 6.32873 6.36254 6.40098 6.64117 6.67535 6.76697 7.09522 7.22434 7.24445 7.53924 7.76391 8.01749 8.11002 8.47710 8.71697 9.00396 9.57392 11.04359 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.017181 B = 0.009023 C = 0.006947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.279541 B = 3102.443786 C = 4029.790007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.054 3.946 3 N -0.514 5.514 4 C 0.186 3.814 5 C -0.508 4.508 6 H 0.064 0.936 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.896 3.104 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.285 1.285 13 C 0.054 3.946 14 H 0.102 0.898 15 C -0.168 4.168 16 C 0.104 3.896 17 N -0.589 5.589 18 C 0.084 3.916 19 C -0.194 4.194 20 C -0.186 4.186 21 C 0.539 3.461 22 O -0.525 6.525 23 H 0.061 0.939 24 H 0.049 0.951 25 H 0.043 0.957 26 H 0.090 0.910 27 H 0.025 0.975 28 H 0.037 0.963 29 H -0.003 1.003 30 H 0.260 0.740 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.068 0.932 34 H 0.089 0.911 35 H 0.123 0.877 36 H 0.130 0.870 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.277 1.238 10.252 10.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.073 4.073 3 N -0.239 5.239 4 C 0.062 3.938 5 C -0.547 4.547 6 H 0.082 0.918 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.724 3.276 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.211 1.211 13 C -0.059 4.059 14 H 0.120 0.880 15 C -0.208 4.208 16 C -0.018 4.018 17 N -0.321 5.321 18 C -0.020 4.020 19 C -0.232 4.232 20 C -0.225 4.225 21 C 0.327 3.673 22 O -0.401 6.401 23 H 0.080 0.920 24 H 0.068 0.932 25 H 0.062 0.938 26 H 0.108 0.892 27 H 0.043 0.957 28 H 0.055 0.945 29 H 0.015 0.985 30 H 0.070 0.930 31 H 0.094 0.906 32 H 0.111 0.889 33 H 0.087 0.913 34 H 0.108 0.892 35 H 0.140 0.860 36 H 0.148 0.852 37 H 0.109 0.891 38 H 0.113 0.887 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.691 2.054 9.647 10.531 hybrid contribution 0.970 -0.728 -0.370 1.268 sum -2.721 1.325 9.277 9.758 Atomic orbital electron populations 1.21798 0.96416 1.00445 1.01626 1.22042 0.94434 0.89517 1.01341 1.62274 1.24968 1.17061 1.19591 1.19966 0.80902 0.97254 0.95705 1.21196 0.93211 1.44400 0.95863 0.91792 1.24947 0.95698 0.95528 0.98227 1.69946 0.98410 1.48638 1.36568 0.86471 0.78115 0.78091 0.84962 1.19632 1.21034 1.21126 1.22470 0.99723 0.92256 0.91409 0.88022 1.23242 0.96931 1.00363 1.00256 1.22200 0.97135 0.82443 1.00063 1.47539 1.17681 1.06419 1.60480 1.21394 0.99817 0.81233 0.99574 1.23738 1.00849 0.95525 1.03062 1.23343 0.99705 1.03530 0.95904 1.20644 0.80348 0.90742 0.75590 1.90515 1.56929 1.46770 1.45888 0.91982 0.93228 0.93806 0.89189 0.95687 0.94546 0.98504 0.93032 0.90583 0.88932 0.91321 0.89240 0.85963 0.85242 0.89120 0.88653 0.88042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.92 37.16 0.37 -1.87 16 2 C 0.05 1.00 5.37 -3.82 -0.02 0.98 16 3 N -0.51 -10.95 4.45 -228.10 -1.01 -11.97 16 4 C 0.19 4.64 2.95 -4.98 -0.01 4.63 16 5 C -0.51 -14.06 8.25 -34.44 -0.28 -14.35 16 6 H 0.06 1.78 7.29 -52.48 -0.38 1.40 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -25.80 13.29 55.43 0.74 -25.06 16 9 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 10 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 13 C 0.05 0.99 3.05 -67.72 -0.21 0.79 16 14 H 0.10 1.71 6.77 -51.93 -0.35 1.36 16 15 C -0.17 -2.54 5.92 -25.10 -0.15 -2.69 16 16 C 0.10 1.67 6.36 -3.13 -0.02 1.65 16 17 N -0.59 -10.54 2.81 -164.85 -0.46 -11.00 16 18 C 0.08 1.34 6.88 -67.93 -0.47 0.87 16 19 C -0.19 -3.05 9.77 -26.69 -0.26 -3.31 16 20 C -0.19 -3.15 10.34 -26.69 -0.28 -3.43 16 21 C 0.54 10.93 6.30 -10.86 -0.07 10.86 16 22 O -0.53 -12.01 14.69 5.56 0.08 -11.92 16 23 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.04 0.62 6.96 -51.93 -0.36 0.26 16 26 H 0.09 1.84 6.58 -51.93 -0.34 1.50 16 27 H 0.03 0.42 6.35 -51.93 -0.33 0.09 16 28 H 0.04 1.00 6.00 -51.93 -0.31 0.69 16 29 H 0.00 -0.07 6.09 -51.93 -0.32 -0.38 16 30 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 31 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.09 1.44 5.84 -51.92 -0.30 1.13 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.09 1.70 6.30 -51.93 -0.33 1.37 16 35 H 0.12 1.57 8.14 -51.93 -0.42 1.15 16 36 H 0.13 2.41 5.30 -51.93 -0.28 2.14 16 37 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 38 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.10 2.11 8.14 -51.93 -0.42 1.69 16 LS Contribution 303.59 15.07 4.58 4.58 Total: -1.00 -31.02 303.59 -8.42 -39.43 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -5.82 Total: 3.76 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: -1.50 Total: -4.37 kcal Atomic # 7 Polarization: -47.29 SS G_CDS: -0.74 Total: -48.03 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.08 Total: -11.92 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.02 -8.42 -39.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336681619.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.132 kcal (2) G-P(sol) polarization free energy of solvation -31.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds