Wall clock time and date at job start Sun Mar 29 2020 23:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42890 * 113.99736 * 2 1 4 4 C 1.53004 * 109.47150 * 180.02562 * 3 2 1 5 5 C 1.47203 * 109.57383 * 300.15863 * 4 3 2 6 6 N 3.58076 * 143.54222 * 93.09721 * 2 1 3 7 7 C 1.53113 * 109.52663 * 179.97438 * 4 3 2 8 8 C 1.53039 * 109.28246 * 182.44123 * 7 4 3 9 9 N 1.46846 * 109.52195 * 59.17585 * 8 7 4 10 10 C 1.46896 * 111.00009 * 174.16045 * 9 8 7 11 11 C 1.52996 * 109.47256 * 170.00096 * 10 9 8 12 12 C 1.50702 * 109.47159 * 180.02562 * 11 10 9 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99942 * 179.72211 * 12 11 10 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 11 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 11 17 17 H 1.48501 * 109.47188 * 90.00793 * 16 14 12 18 18 H 1.48501 * 109.47085 * 210.00372 * 16 14 12 19 19 H 1.48498 * 109.47634 * 330.00608 * 16 14 12 20 20 C 1.46842 * 111.20246 * 298.26169 * 9 8 7 21 21 C 1.53040 * 109.52316 * 61.74167 * 20 9 8 22 22 H 1.09004 * 109.47156 * 300.00113 * 1 2 3 23 23 H 1.08994 * 109.47364 * 60.00361 * 1 2 3 24 24 H 1.09009 * 109.47034 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47542 * 59.99906 * 3 2 1 26 26 H 1.09004 * 109.47585 * 299.99706 * 3 2 1 27 27 H 1.09006 * 109.50561 * 62.49732 * 7 4 3 28 28 H 1.09007 * 109.50381 * 302.38188 * 7 4 3 29 29 H 1.09007 * 109.45964 * 299.16347 * 8 7 4 30 30 H 1.08997 * 109.46289 * 179.19858 * 8 7 4 31 31 H 1.09004 * 109.46774 * 50.00295 * 10 9 8 32 32 H 1.09000 * 109.47723 * 290.00683 * 10 9 8 33 33 H 1.09004 * 109.47066 * 60.00378 * 11 10 9 34 34 H 1.08994 * 109.47405 * 300.00209 * 11 10 9 35 35 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 36 36 H 1.08995 * 109.46673 * 181.75419 * 20 9 8 37 37 H 1.09002 * 109.46312 * 301.72950 * 20 9 8 38 38 H 1.08997 * 109.50368 * 180.88328 * 21 20 9 39 39 H 1.08992 * 109.50201 * 60.76083 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 3.9726 0.4509 1.1983 6 7 4.3090 -0.1150 2.1247 7 6 4.1595 2.5828 -0.0013 8 6 5.6833 2.4561 -0.0635 9 7 6.0660 1.7291 -1.2806 10 6 7.5257 1.7087 -1.4446 11 6 7.8989 0.7428 -2.5709 12 6 9.3964 0.7214 -2.7387 13 1 10.0197 1.3350 -2.1051 14 6 9.9713 -0.0864 -3.6969 15 7 9.2123 -0.8339 -4.4682 16 14 11.8279 -0.1186 -3.8998 17 1 12.4033 -1.1709 -3.0240 18 1 12.1661 -0.4134 -5.3154 19 1 12.3903 1.2025 -3.5212 20 6 5.5174 0.3671 -1.2803 21 6 3.9886 0.4315 -1.2545 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5137 -0.8899 24 1 -0.3633 -1.0278 0.0005 25 1 1.6885 1.8464 0.8899 26 1 1.6886 1.8464 -0.8900 27 1 3.8749 3.1088 0.9101 28 1 3.8049 3.1392 -0.8690 29 1 6.0385 1.9116 0.8116 30 1 6.1301 3.4502 -0.0784 31 1 7.9911 1.3804 -0.5152 32 1 7.8775 2.7100 -1.6931 33 1 7.4335 1.0711 -3.5003 34 1 7.5472 -0.2585 -2.3223 35 1 9.6168 -1.4019 -5.1426 36 1 5.8436 -0.1561 -2.1791 37 1 5.8732 -0.1676 -0.3996 38 1 3.5820 -0.5797 -1.2384 39 1 3.6314 0.9540 -2.1418 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341980472.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:36:51 Heat of formation + Delta-G solvation = -24.798054 kcal Electronic energy + Delta-G solvation = -18817.158710 eV Core-core repulsion = 15952.635987 eV Total energy + Delta-G solvation = -2864.522723 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.95237 -37.77328 -36.14582 -34.37623 -32.75437 -30.89288 -29.79168 -27.67161 -26.04350 -24.12710 -23.42710 -22.77961 -21.18921 -19.74961 -16.91220 -16.57160 -16.40024 -16.00456 -15.60148 -14.80624 -14.56990 -14.33108 -14.08544 -13.87905 -13.56494 -13.41208 -12.68833 -12.43921 -12.32814 -12.13120 -11.96666 -11.83230 -11.60303 -11.35536 -11.12769 -11.01080 -10.92156 -10.56995 -10.37169 -10.26979 -9.94491 -9.87292 -9.31287 -9.07464 -8.33832 -7.74605 -6.00204 -4.02240 2.85108 2.89017 3.32752 3.38993 3.42220 3.46641 3.84355 4.37017 4.53287 4.61666 4.71033 4.79276 5.04495 5.07932 5.18755 5.23097 5.29914 5.36181 5.43445 5.50076 5.65000 5.67362 5.79513 5.96298 5.96958 6.08714 6.27619 6.36601 6.48059 6.56366 6.85536 6.92309 7.46712 7.58345 7.68171 7.76426 7.84769 8.03930 8.42826 9.04121 9.61513 11.11172 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.036607 B = 0.004355 C = 0.004198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.707191 B = 6427.171737 C = 6668.672542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.386 6.386 3 C 0.074 3.926 4 C 0.039 3.961 5 C 0.227 3.773 6 N -0.439 5.439 7 C -0.101 4.101 8 C 0.051 3.949 9 N -0.535 5.535 10 C 0.062 3.938 11 C 0.020 3.980 12 C -0.522 4.522 13 H 0.054 0.946 14 C 0.059 3.941 15 N -0.893 5.893 16 Si 0.892 3.108 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.274 1.274 20 C 0.045 3.955 21 C -0.099 4.099 22 H 0.039 0.961 23 H 0.044 0.956 24 H 0.086 0.914 25 H 0.056 0.944 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.095 0.905 29 H 0.026 0.974 30 H 0.080 0.920 31 H 0.019 0.981 32 H 0.065 0.935 33 H 0.027 0.973 34 H 0.020 0.980 35 H 0.261 0.739 36 H 0.103 0.897 37 H 0.025 0.975 38 H 0.080 0.920 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.347 6.597 6.809 19.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.305 6.305 3 C -0.004 4.004 4 C 0.035 3.965 5 C -0.092 4.092 6 N -0.113 5.113 7 C -0.139 4.139 8 C -0.078 4.078 9 N -0.260 5.260 10 C -0.065 4.065 11 C -0.017 4.017 12 C -0.561 4.561 13 H 0.072 0.928 14 C -0.143 4.143 15 N -0.532 5.532 16 Si 0.720 3.280 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.083 4.083 21 C -0.138 4.138 22 H 0.058 0.942 23 H 0.063 0.937 24 H 0.104 0.896 25 H 0.074 0.926 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.114 0.886 29 H 0.045 0.955 30 H 0.098 0.902 31 H 0.037 0.963 32 H 0.083 0.917 33 H 0.045 0.955 34 H 0.038 0.962 35 H 0.070 0.930 36 H 0.121 0.879 37 H 0.044 0.956 38 H 0.098 0.902 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -16.908 5.690 7.684 19.424 hybrid contribution 1.080 -0.133 0.273 1.122 sum -15.828 5.557 7.957 18.567 Atomic orbital electron populations 1.22749 0.80755 1.02939 0.99981 1.87935 1.19840 1.27276 1.95422 1.22570 0.90763 0.85461 1.01592 1.18534 0.93809 0.95445 0.88669 1.28809 0.92897 0.93501 0.93948 1.81171 1.09027 1.09213 1.11933 1.21664 0.96060 0.92735 1.03487 1.22076 0.94090 0.99647 0.91991 1.62117 1.13625 1.15299 1.34977 1.22324 0.83403 1.01399 0.99340 1.19250 0.96038 0.93496 0.92893 1.21184 0.92101 1.24876 1.17930 0.92776 1.24983 0.98049 0.95471 0.95761 1.69960 1.34941 1.26959 1.21383 0.86595 0.85789 0.78363 0.77260 1.20745 1.21178 1.19868 1.22280 0.92955 0.90565 1.02529 1.21710 0.96456 1.00853 0.94782 0.94202 0.93708 0.89565 0.92610 0.90842 0.90915 0.88600 0.95539 0.90163 0.96287 0.91699 0.95502 0.96162 0.92980 0.87913 0.95647 0.90160 0.89054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.39 -4.18 9.70 -35.23 -0.34 -4.52 16 3 C 0.07 0.67 4.79 37.16 0.18 0.84 16 4 C 0.04 0.45 0.56 -157.17 -0.09 0.37 16 5 C 0.23 3.38 11.24 -20.74 -0.23 3.14 16 6 N -0.44 -7.66 18.54 42.17 0.78 -6.88 16 7 C -0.10 -1.04 4.86 -26.65 -0.13 -1.17 16 8 C 0.05 0.71 5.22 -3.83 -0.02 0.69 16 9 N -0.54 -9.26 4.81 -234.68 -1.13 -10.39 16 10 C 0.06 1.29 5.21 -3.83 -0.02 1.27 16 11 C 0.02 0.52 4.22 -27.88 -0.12 0.40 16 12 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 13 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 14 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 15 N -0.89 -26.67 13.29 55.43 0.74 -25.93 16 16 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 20 C 0.04 0.77 4.64 -3.84 -0.02 0.75 16 21 C -0.10 -1.30 4.68 -26.65 -0.12 -1.43 16 22 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 23 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 24 H 0.09 0.57 8.14 -51.92 -0.42 0.15 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.03 0.42 7.32 -51.92 -0.38 0.04 16 30 H 0.08 1.03 8.12 -51.93 -0.42 0.61 16 31 H 0.02 0.41 8.08 -51.93 -0.42 -0.01 16 32 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 33 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.02 0.54 6.21 -51.93 -0.32 0.22 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.10 2.00 5.81 -51.93 -0.30 1.70 16 37 H 0.03 0.48 7.31 -51.93 -0.38 0.10 16 38 H 0.08 1.07 7.77 -51.93 -0.40 0.66 16 39 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 316.28 15.07 4.77 4.77 Total: -1.00 -32.25 316.28 -6.48 -38.73 By element: Atomic # 1 Polarization: 1.20 SS G_CDS: -6.40 Total: -5.20 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: 0.13 Total: -7.27 kcal Atomic # 7 Polarization: -43.58 SS G_CDS: 0.39 Total: -43.19 kcal Atomic # 8 Polarization: -4.18 SS G_CDS: -0.34 Total: -4.52 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.25 -6.48 -38.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341980472.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.930 kcal (2) G-P(sol) polarization free energy of solvation -32.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds