Wall clock time and date at job start Sun Mar 29 2020 23:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42890 * 113.99736 * 2 1 4 4 C 1.53004 * 109.47150 * 180.02562 * 3 2 1 5 5 C 1.47203 * 109.57383 * 300.15863 * 4 3 2 6 6 N 3.58076 * 143.54222 * 93.09721 * 2 1 3 7 7 C 1.53113 * 109.52663 * 179.97438 * 4 3 2 8 8 C 1.53039 * 109.28246 * 182.44123 * 7 4 3 9 9 N 1.46846 * 109.52195 * 59.17585 * 8 7 4 10 10 C 1.46896 * 111.00009 * 174.16045 * 9 8 7 11 11 C 1.52996 * 109.47256 * 170.00096 * 10 9 8 12 12 C 1.50702 * 109.47159 * 180.02562 * 11 10 9 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99942 * 179.72211 * 12 11 10 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 11 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 11 17 17 H 1.48501 * 109.47188 * 90.00793 * 16 14 12 18 18 H 1.48501 * 109.47085 * 210.00372 * 16 14 12 19 19 H 1.48498 * 109.47634 * 330.00608 * 16 14 12 20 20 C 1.46842 * 111.20246 * 298.26169 * 9 8 7 21 21 C 1.53040 * 109.52316 * 61.74167 * 20 9 8 22 22 H 1.09004 * 109.47156 * 300.00113 * 1 2 3 23 23 H 1.08994 * 109.47364 * 60.00361 * 1 2 3 24 24 H 1.09009 * 109.47034 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47542 * 59.99906 * 3 2 1 26 26 H 1.09004 * 109.47585 * 299.99706 * 3 2 1 27 27 H 1.09006 * 109.50561 * 62.49732 * 7 4 3 28 28 H 1.09007 * 109.50381 * 302.38188 * 7 4 3 29 29 H 1.09007 * 109.45964 * 299.16347 * 8 7 4 30 30 H 1.08997 * 109.46289 * 179.19858 * 8 7 4 31 31 H 1.09004 * 109.46774 * 50.00295 * 10 9 8 32 32 H 1.09000 * 109.47723 * 290.00683 * 10 9 8 33 33 H 1.09004 * 109.47066 * 60.00378 * 11 10 9 34 34 H 1.08994 * 109.47405 * 300.00209 * 11 10 9 35 35 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 36 36 H 1.08995 * 109.46673 * 181.75419 * 20 9 8 37 37 H 1.09002 * 109.46312 * 301.72950 * 20 9 8 38 38 H 1.08997 * 109.50368 * 180.88328 * 21 20 9 39 39 H 1.08992 * 109.50201 * 60.76083 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 3.9726 0.4509 1.1983 6 7 4.3090 -0.1150 2.1247 7 6 4.1595 2.5828 -0.0013 8 6 5.6833 2.4561 -0.0635 9 7 6.0660 1.7291 -1.2806 10 6 7.5257 1.7087 -1.4446 11 6 7.8989 0.7428 -2.5709 12 6 9.3964 0.7214 -2.7387 13 1 10.0197 1.3350 -2.1051 14 6 9.9713 -0.0864 -3.6969 15 7 9.2123 -0.8339 -4.4682 16 14 11.8279 -0.1186 -3.8998 17 1 12.4033 -1.1709 -3.0240 18 1 12.1661 -0.4134 -5.3154 19 1 12.3903 1.2025 -3.5212 20 6 5.5174 0.3671 -1.2803 21 6 3.9886 0.4315 -1.2545 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5137 -0.8899 24 1 -0.3633 -1.0278 0.0005 25 1 1.6885 1.8464 0.8899 26 1 1.6886 1.8464 -0.8900 27 1 3.8749 3.1088 0.9101 28 1 3.8049 3.1392 -0.8690 29 1 6.0385 1.9116 0.8116 30 1 6.1301 3.4502 -0.0784 31 1 7.9911 1.3804 -0.5152 32 1 7.8775 2.7100 -1.6931 33 1 7.4335 1.0711 -3.5003 34 1 7.5472 -0.2585 -2.3223 35 1 9.6168 -1.4019 -5.1426 36 1 5.8436 -0.1561 -2.1791 37 1 5.8732 -0.1676 -0.3996 38 1 3.5820 -0.5797 -1.2384 39 1 3.6314 0.9540 -2.1418 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341980472.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:36:51 Heat of formation + Delta-G solvation = -47.350362 kcal Electronic energy + Delta-G solvation = -18818.136652 eV Core-core repulsion = 15952.635987 eV Total energy + Delta-G solvation = -2865.500664 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.02823 -38.67587 -37.41561 -35.83837 -34.60898 -32.09981 -31.43074 -28.75514 -27.03760 -25.69323 -24.68268 -23.86613 -22.53451 -21.36714 -18.65577 -17.81537 -17.16672 -17.03813 -16.56746 -16.44572 -16.01642 -15.65324 -15.45204 -15.11442 -14.78344 -14.50511 -14.20875 -13.98760 -13.54670 -13.29451 -13.18088 -12.97873 -12.94051 -12.77471 -12.45747 -12.40012 -12.23296 -12.13478 -11.83507 -11.66095 -11.43640 -11.20379 -11.00375 -10.55498 -10.52015 -9.23875 -8.20460 -6.31119 1.39740 1.40716 1.51984 1.70696 1.75744 2.39934 2.73869 2.86769 3.08832 3.13097 3.68505 3.74177 3.92963 4.19228 4.28648 4.37485 4.46433 4.56540 4.56952 4.59783 4.64927 4.68440 4.71789 4.79531 4.93945 4.95815 4.98877 5.04758 5.08593 5.20404 5.25848 5.45350 5.67345 5.77818 6.05641 6.26082 6.28844 6.32023 6.54962 6.85135 7.37615 8.91342 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.036607 B = 0.004355 C = 0.004198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.707191 B = 6427.171737 C = 6668.672542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.420 6.420 3 C 0.076 3.924 4 C 0.040 3.960 5 C 0.243 3.757 6 N -0.494 5.494 7 C -0.092 4.092 8 C 0.045 3.955 9 N -0.530 5.530 10 C 0.075 3.925 11 C 0.030 3.970 12 C -0.547 4.547 13 H 0.057 0.943 14 C 0.004 3.996 15 N -0.929 5.929 16 Si 0.963 3.037 17 H -0.277 1.277 18 H -0.279 1.279 19 H -0.262 1.262 20 C 0.048 3.952 21 C -0.089 4.089 22 H 0.050 0.950 23 H 0.062 0.938 24 H 0.086 0.914 25 H 0.075 0.925 26 H 0.106 0.894 27 H 0.103 0.897 28 H 0.126 0.874 29 H 0.005 0.995 30 H 0.098 0.902 31 H 0.006 0.994 32 H 0.074 0.926 33 H 0.003 0.997 34 H -0.005 1.005 35 H 0.264 0.736 36 H 0.069 0.931 37 H -0.002 1.002 38 H 0.075 0.925 39 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.519 8.672 6.831 21.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.339 6.339 3 C -0.001 4.001 4 C 0.036 3.964 5 C -0.074 4.074 6 N -0.170 5.170 7 C -0.130 4.130 8 C -0.083 4.083 9 N -0.254 5.254 10 C -0.052 4.052 11 C -0.008 4.008 12 C -0.586 4.586 13 H 0.076 0.924 14 C -0.195 4.195 15 N -0.569 5.569 16 Si 0.788 3.212 17 H -0.202 1.202 18 H -0.204 1.204 19 H -0.186 1.186 20 C -0.080 4.080 21 C -0.128 4.128 22 H 0.068 0.932 23 H 0.081 0.919 24 H 0.104 0.896 25 H 0.093 0.907 26 H 0.124 0.876 27 H 0.122 0.878 28 H 0.144 0.856 29 H 0.023 0.977 30 H 0.116 0.884 31 H 0.025 0.975 32 H 0.092 0.908 33 H 0.022 0.978 34 H 0.014 0.986 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.016 0.984 38 H 0.094 0.906 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -18.099 7.780 7.720 21.159 hybrid contribution 1.419 -0.812 0.256 1.654 sum -16.681 6.968 7.976 19.759 Atomic orbital electron populations 1.22904 0.79068 1.03506 1.01352 1.87891 1.21770 1.28525 1.95746 1.22673 0.88002 0.85324 1.04140 1.18817 0.96326 0.95356 0.85870 1.29591 0.91371 0.92520 0.93953 1.81171 1.10943 1.10891 1.14001 1.21722 0.92571 0.92230 1.06497 1.22273 0.97332 0.99410 0.89258 1.62127 1.10896 1.15284 1.37133 1.22007 0.86144 1.00233 0.96814 1.19063 0.94835 0.93380 0.93474 1.21636 0.93572 1.25143 1.18203 0.92449 1.25914 1.03310 0.94913 0.95325 1.70090 1.37180 1.27622 1.21977 0.85474 0.79449 0.78841 0.77448 1.20237 1.20440 1.18632 1.22177 0.96147 0.90094 0.99574 1.21624 0.92743 1.01557 0.96867 0.93170 0.91902 0.89595 0.90672 0.87571 0.87814 0.85612 0.97669 0.88407 0.97544 0.90805 0.97823 0.98631 0.92732 0.91253 0.98411 0.90634 0.86723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 113.37 1.25 1.58 16 2 O -0.42 -8.08 9.70 -148.98 -1.45 -9.53 16 3 C 0.08 1.07 4.79 71.98 0.34 1.42 16 4 C 0.04 0.83 0.56 -53.90 -0.03 0.80 16 5 C 0.24 7.08 11.24 89.44 1.01 8.09 16 6 N -0.49 -17.53 18.54 20.01 0.37 -17.16 16 7 C -0.09 -1.55 4.86 30.65 0.15 -1.40 16 8 C 0.05 1.19 5.22 86.33 0.45 1.64 16 9 N -0.53 -18.21 4.81 -896.38 -4.31 -22.52 16 10 C 0.08 3.22 5.21 86.30 0.45 3.67 16 11 C 0.03 1.58 4.22 29.85 0.13 1.71 16 12 C -0.55 -31.62 9.11 25.60 0.23 -31.39 16 13 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 14 C 0.00 0.21 5.46 84.66 0.46 0.67 16 15 N -0.93 -56.75 13.29 21.45 0.28 -56.47 16 16 Si 0.96 44.77 29.54 68.60 2.03 46.80 16 17 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 18 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 19 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 20 C 0.05 1.72 4.64 86.33 0.40 2.12 16 21 C -0.09 -2.25 4.68 30.65 0.14 -2.10 16 22 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16 23 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 24 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 25 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.10 1.22 8.14 -2.38 -0.02 1.21 16 28 H 0.13 1.51 8.14 -2.38 -0.02 1.49 16 29 H 0.01 0.16 7.32 -2.38 -0.02 0.14 16 30 H 0.10 2.25 8.12 -2.39 -0.02 2.23 16 31 H 0.01 0.28 8.08 -2.38 -0.02 0.26 16 32 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 33 H 0.00 0.19 8.14 -2.38 -0.02 0.17 16 34 H 0.00 -0.26 6.21 -2.39 -0.01 -0.28 16 35 H 0.26 15.13 8.31 -92.70 -0.77 14.36 16 36 H 0.07 2.90 5.81 -2.39 -0.01 2.89 16 37 H 0.00 -0.10 7.31 -2.39 -0.02 -0.11 16 38 H 0.08 1.99 7.77 -2.39 -0.02 1.97 16 39 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -73.24 316.28 2.92 -70.31 By element: Atomic # 1 Polarization: 0.76 SS G_CDS: 1.01 Total: 1.77 kcal Atomic # 6 Polarization: -18.18 SS G_CDS: 4.98 Total: -13.20 kcal Atomic # 7 Polarization: -92.50 SS G_CDS: -3.65 Total: -96.15 kcal Atomic # 8 Polarization: -8.08 SS G_CDS: -1.45 Total: -9.53 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -73.24 2.92 -70.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341980472.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.964 kcal (2) G-P(sol) polarization free energy of solvation -73.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds