Wall clock time and date at job start Sun Mar 29 2020 22:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46904 * 109.46521 * 2 1 4 4 C 1.46899 * 110.99785 * 159.30735 * 3 2 1 5 5 C 1.50703 * 109.47367 * 190.00092 * 4 3 2 6 6 O 1.21297 * 119.99316 * 359.97438 * 5 4 3 7 7 N 1.34771 * 120.00141 * 179.97438 * 5 4 3 8 8 C 1.37105 * 119.99913 * 179.97438 * 7 5 4 9 9 H 1.07997 * 120.00136 * 219.52951 * 8 7 5 10 10 C 1.38958 * 119.99613 * 39.53531 * 8 7 5 11 11 N 1.31411 * 120.00088 * 20.11631 * 10 8 7 12 12 Si 1.86795 * 119.99741 * 200.12385 * 10 8 7 13 13 H 1.48504 * 109.47299 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.47467 * 119.99892 * 12 10 8 15 15 H 1.48497 * 109.46951 * 239.99866 * 12 10 8 16 16 C 1.46496 * 120.00363 * 359.97438 * 7 5 4 17 17 C 1.52998 * 117.50070 * 189.34296 * 16 7 5 18 18 C 1.53004 * 117.49980 * 120.68256 * 16 7 5 19 19 C 1.46901 * 111.00004 * 283.25686 * 3 2 1 20 20 C 1.53000 * 117.49886 * 3.95811 * 19 3 2 21 21 C 1.52996 * 117.49972 * 295.33615 * 19 3 2 22 22 H 1.08998 * 109.47687 * 55.45677 * 1 2 3 23 23 H 1.09011 * 109.46450 * 175.45102 * 1 2 3 24 24 H 1.08996 * 109.47193 * 295.44940 * 1 2 3 25 25 H 1.09000 * 109.47640 * 240.00129 * 2 1 3 26 26 H 1.08995 * 109.47225 * 119.99517 * 2 1 3 27 27 H 1.08999 * 109.47244 * 309.99640 * 4 3 2 28 28 H 1.09003 * 109.47670 * 69.99695 * 4 3 2 29 29 H 0.96997 * 120.00231 * 184.86058 * 11 10 8 30 30 H 1.09000 * 115.54920 * 335.01641 * 16 7 5 31 31 H 1.09005 * 117.49961 * 0.02562 * 17 16 7 32 32 H 1.09000 * 117.49735 * 145.02432 * 17 16 7 33 33 H 1.08996 * 117.49981 * 214.98552 * 18 16 7 34 34 H 1.09004 * 117.49812 * 359.97299 * 18 16 7 35 35 H 1.09002 * 115.54880 * 149.66718 * 19 3 2 36 36 H 1.08996 * 117.49873 * 0.02562 * 20 19 3 37 37 H 1.08995 * 117.49700 * 145.01904 * 20 19 3 38 38 H 1.09000 * 117.50132 * 214.97943 * 21 19 3 39 39 H 1.09007 * 117.49995 * 359.97438 * 21 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0195 1.3851 0.0000 4 6 3.4046 1.4538 0.4846 5 6 3.7891 2.8944 0.7040 6 8 2.9882 3.7769 0.4783 7 7 5.0228 3.2020 1.1509 8 6 5.3728 4.5126 1.3500 9 1 6.3620 4.8539 1.0827 10 6 4.4548 5.4016 1.8958 11 7 3.4259 4.9484 2.5762 12 14 4.6833 7.2407 1.6621 13 1 5.9110 7.4897 0.8646 14 1 3.5069 7.7989 0.9480 15 1 4.8138 7.8957 2.9884 16 6 5.9899 2.1360 1.4240 17 6 7.2892 2.5252 2.1321 18 6 7.3069 2.1605 0.6455 19 6 1.8984 1.9862 -1.3349 20 6 1.2281 1.1511 -2.4276 21 6 2.7402 1.3822 -2.4607 22 1 -0.3634 0.5827 -0.8464 23 1 -0.3632 -1.0246 -0.0815 24 1 -0.3633 0.4416 0.9279 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5137 0.8900 27 1 3.4882 0.9084 1.4246 28 1 4.0707 1.0085 -0.2544 29 1 2.7477 5.5633 2.8968 30 1 5.5617 1.1613 1.6580 31 1 7.4242 3.5744 2.3952 32 1 7.7159 1.8064 2.8316 33 1 7.7452 1.2020 0.3677 34 1 7.4536 2.9695 -0.0701 35 1 1.7337 3.0636 -1.3521 36 1 0.8766 0.1557 -2.1559 37 1 0.6221 1.6789 -3.1639 38 1 3.1289 2.0621 -3.2188 39 1 3.3842 0.5390 -2.2108 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349429074.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:17 Heat of formation + Delta-G solvation = 55.290308 kcal Electronic energy + Delta-G solvation = -19715.247521 eV Core-core repulsion = 16854.197690 eV Total energy + Delta-G solvation = -2861.049831 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.31299 -38.00244 -35.85127 -33.40454 -32.63095 -31.04964 -30.37472 -26.40139 -24.05689 -22.97207 -22.05828 -21.67186 -21.09648 -19.72514 -18.73425 -16.76968 -16.24366 -15.94917 -15.04454 -14.56851 -14.45216 -14.07356 -13.64838 -13.31197 -13.14077 -12.71448 -12.39859 -11.95878 -11.73737 -11.57001 -11.27418 -11.05777 -10.89826 -10.84428 -10.79228 -10.73186 -10.44151 -10.15662 -10.03953 -9.98303 -9.78411 -9.69666 -8.66414 -7.99981 -7.56707 -6.91416 -5.97845 -3.74954 3.36778 3.45409 3.47320 4.01336 4.22446 4.26071 4.42976 4.82679 4.93835 5.12320 5.23067 5.27481 5.33784 5.41119 5.49702 5.59415 5.69882 5.72367 5.79482 5.81168 5.92234 5.97798 6.09093 6.11933 6.20729 6.23205 6.24457 6.32023 6.45604 6.49518 6.75400 6.76462 6.95753 7.46449 7.58139 7.70202 8.35165 9.15344 9.30125 9.77635 10.43661 11.07483 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.020212 B = 0.007928 C = 0.006681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.958544 B = 3531.149332 C = 4189.884733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.043 3.957 3 N -0.484 5.484 4 C 0.046 3.954 5 C 0.484 3.516 6 O -0.509 6.509 7 N -0.432 5.432 8 C -0.345 4.345 9 H 0.077 0.923 10 C 0.071 3.929 11 N -0.820 5.820 12 Si 0.902 3.098 13 H -0.273 1.273 14 H -0.282 1.282 15 H -0.287 1.287 16 C 0.077 3.923 17 C -0.177 4.177 18 C -0.208 4.208 19 C 0.052 3.948 20 C -0.201 4.201 21 C -0.219 4.219 22 H 0.063 0.937 23 H 0.050 0.950 24 H 0.061 0.939 25 H 0.034 0.966 26 H 0.068 0.932 27 H 0.081 0.919 28 H 0.044 0.956 29 H 0.262 0.738 30 H 0.101 0.899 31 H 0.107 0.893 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.135 0.865 36 H 0.102 0.898 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.056 -10.269 -5.285 11.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.085 4.085 3 N -0.207 5.207 4 C -0.085 4.085 5 C 0.270 3.730 6 O -0.384 6.384 7 N -0.155 5.155 8 C -0.472 4.472 9 H 0.094 0.906 10 C -0.140 4.140 11 N -0.454 5.454 12 Si 0.730 3.270 13 H -0.198 1.198 14 H -0.208 1.208 15 H -0.214 1.214 16 C -0.030 4.030 17 C -0.215 4.215 18 C -0.247 4.247 19 C -0.057 4.057 20 C -0.238 4.238 21 C -0.258 4.258 22 H 0.082 0.918 23 H 0.069 0.931 24 H 0.081 0.919 25 H 0.052 0.948 26 H 0.087 0.913 27 H 0.099 0.901 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.118 0.882 31 H 0.125 0.875 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.109 0.891 35 H 0.152 0.848 36 H 0.120 0.880 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.953 -9.465 -4.891 10.697 hybrid contribution 0.719 0.254 -0.553 0.942 sum -0.234 -9.211 -5.445 10.702 Atomic orbital electron populations 1.21888 0.94931 1.00541 1.03256 1.22182 0.96491 0.89578 1.00216 1.61705 1.20479 1.16363 1.22105 1.22058 0.88291 0.98625 0.99519 1.19469 0.83199 0.88642 0.81654 1.90499 1.48584 1.48777 1.50494 1.42819 1.10164 1.04016 1.58452 1.18868 1.01420 0.83586 1.43314 0.90558 1.25081 0.96509 0.99101 0.93285 1.69926 1.10638 1.35772 1.29053 0.86313 0.78204 0.85009 0.77508 1.19799 1.20771 1.21403 1.21662 0.85600 0.93211 1.02546 1.23092 1.01495 1.03093 0.93841 1.23300 1.04091 1.01986 0.95335 1.22923 1.01297 0.98999 0.82496 1.23486 0.95417 1.02244 1.02692 1.23328 0.93502 1.04266 1.04732 0.91826 0.93081 0.91941 0.94776 0.91316 0.90073 0.93756 0.92751 0.88153 0.87504 0.89924 0.89977 0.89061 0.84771 0.88012 0.88906 0.88867 0.89556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.37 37.16 0.35 -1.60 16 2 C 0.04 0.63 5.23 -3.82 -0.02 0.61 16 3 N -0.48 -9.10 4.40 -228.08 -1.00 -10.11 16 4 C 0.05 0.92 3.87 -4.97 -0.02 0.90 16 5 C 0.48 12.28 6.75 -10.99 -0.07 12.20 16 6 O -0.51 -14.81 12.11 5.54 0.07 -14.74 16 7 N -0.43 -10.86 2.88 -107.73 -0.31 -11.17 16 8 C -0.35 -9.49 7.94 -14.93 -0.12 -9.61 16 9 H 0.08 2.04 7.31 -52.49 -0.38 1.66 16 10 C 0.07 2.02 4.33 -17.46 -0.08 1.95 16 11 N -0.82 -24.72 11.42 55.50 0.63 -24.08 16 12 Si 0.90 22.20 29.60 -169.99 -5.03 17.17 16 13 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 14 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 15 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 16 C 0.08 1.54 6.01 -67.93 -0.41 1.13 16 17 C -0.18 -3.23 9.80 -26.69 -0.26 -3.49 16 18 C -0.21 -3.60 10.26 -26.69 -0.27 -3.87 16 19 C 0.05 0.94 5.04 -67.71 -0.34 0.60 16 20 C -0.20 -2.82 8.18 -26.73 -0.22 -3.04 16 21 C -0.22 -3.37 9.26 -26.73 -0.25 -3.62 16 22 H 0.06 0.85 5.85 -51.93 -0.30 0.54 16 23 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 24 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.03 0.46 5.78 -51.93 -0.30 0.16 16 26 H 0.07 0.95 7.72 -51.93 -0.40 0.55 16 27 H 0.08 1.53 7.25 -51.93 -0.38 1.15 16 28 H 0.04 0.81 6.85 -51.93 -0.36 0.45 16 29 H 0.26 7.66 8.32 -40.82 -0.34 7.32 16 30 H 0.10 1.79 6.78 -51.93 -0.35 1.43 16 31 H 0.11 2.17 6.81 -51.93 -0.35 1.82 16 32 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.09 1.71 8.14 -51.93 -0.42 1.28 16 35 H 0.13 2.87 7.14 -51.93 -0.37 2.50 16 36 H 0.10 1.30 4.79 -51.93 -0.25 1.05 16 37 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 39 H 0.09 1.28 7.17 -51.92 -0.37 0.91 16 LS Contribution 306.52 15.07 4.62 4.62 Total: -1.00 -32.09 306.52 -8.65 -40.74 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -5.91 Total: 5.41 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: -1.71 Total: -7.84 kcal Atomic # 7 Polarization: -44.68 SS G_CDS: -0.68 Total: -45.36 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: 0.07 Total: -14.74 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.03 Total: 17.17 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.09 -8.65 -40.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349429074.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.027 kcal (2) G-P(sol) polarization free energy of solvation -32.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds