Wall clock time and date at job start Sun Mar 29 2020 22:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46904 * 109.46521 * 2 1 4 4 C 1.46899 * 110.99785 * 159.30735 * 3 2 1 5 5 C 1.50703 * 109.47367 * 190.00092 * 4 3 2 6 6 O 1.21297 * 119.99316 * 359.97438 * 5 4 3 7 7 N 1.34771 * 120.00141 * 179.97438 * 5 4 3 8 8 C 1.37105 * 119.99913 * 179.97438 * 7 5 4 9 9 H 1.07997 * 120.00136 * 219.52951 * 8 7 5 10 10 C 1.38958 * 119.99613 * 39.53531 * 8 7 5 11 11 N 1.31411 * 120.00088 * 20.11631 * 10 8 7 12 12 Si 1.86795 * 119.99741 * 200.12385 * 10 8 7 13 13 H 1.48504 * 109.47299 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.47467 * 119.99892 * 12 10 8 15 15 H 1.48497 * 109.46951 * 239.99866 * 12 10 8 16 16 C 1.46496 * 120.00363 * 359.97438 * 7 5 4 17 17 C 1.52998 * 117.50070 * 189.34296 * 16 7 5 18 18 C 1.53004 * 117.49980 * 120.68256 * 16 7 5 19 19 C 1.46901 * 111.00004 * 283.25686 * 3 2 1 20 20 C 1.53000 * 117.49886 * 3.95811 * 19 3 2 21 21 C 1.52996 * 117.49972 * 295.33615 * 19 3 2 22 22 H 1.08998 * 109.47687 * 55.45677 * 1 2 3 23 23 H 1.09011 * 109.46450 * 175.45102 * 1 2 3 24 24 H 1.08996 * 109.47193 * 295.44940 * 1 2 3 25 25 H 1.09000 * 109.47640 * 240.00129 * 2 1 3 26 26 H 1.08995 * 109.47225 * 119.99517 * 2 1 3 27 27 H 1.08999 * 109.47244 * 309.99640 * 4 3 2 28 28 H 1.09003 * 109.47670 * 69.99695 * 4 3 2 29 29 H 0.96997 * 120.00231 * 184.86058 * 11 10 8 30 30 H 1.09000 * 115.54920 * 335.01641 * 16 7 5 31 31 H 1.09005 * 117.49961 * 0.02562 * 17 16 7 32 32 H 1.09000 * 117.49735 * 145.02432 * 17 16 7 33 33 H 1.08996 * 117.49981 * 214.98552 * 18 16 7 34 34 H 1.09004 * 117.49812 * 359.97299 * 18 16 7 35 35 H 1.09002 * 115.54880 * 149.66718 * 19 3 2 36 36 H 1.08996 * 117.49873 * 0.02562 * 20 19 3 37 37 H 1.08995 * 117.49700 * 145.01904 * 20 19 3 38 38 H 1.09000 * 117.50132 * 214.97943 * 21 19 3 39 39 H 1.09007 * 117.49995 * 359.97438 * 21 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0195 1.3851 0.0000 4 6 3.4046 1.4538 0.4846 5 6 3.7891 2.8944 0.7040 6 8 2.9882 3.7769 0.4783 7 7 5.0228 3.2020 1.1509 8 6 5.3728 4.5126 1.3500 9 1 6.3620 4.8539 1.0827 10 6 4.4548 5.4016 1.8958 11 7 3.4259 4.9484 2.5762 12 14 4.6833 7.2407 1.6621 13 1 5.9110 7.4897 0.8646 14 1 3.5069 7.7989 0.9480 15 1 4.8138 7.8957 2.9884 16 6 5.9899 2.1360 1.4240 17 6 7.2892 2.5252 2.1321 18 6 7.3069 2.1605 0.6455 19 6 1.8984 1.9862 -1.3349 20 6 1.2281 1.1511 -2.4276 21 6 2.7402 1.3822 -2.4607 22 1 -0.3634 0.5827 -0.8464 23 1 -0.3632 -1.0246 -0.0815 24 1 -0.3633 0.4416 0.9279 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5137 0.8900 27 1 3.4882 0.9084 1.4246 28 1 4.0707 1.0085 -0.2544 29 1 2.7477 5.5633 2.8968 30 1 5.5617 1.1613 1.6580 31 1 7.4242 3.5744 2.3952 32 1 7.7159 1.8064 2.8316 33 1 7.7452 1.2020 0.3677 34 1 7.4536 2.9695 -0.0701 35 1 1.7337 3.0636 -1.3521 36 1 0.8766 0.1557 -2.1559 37 1 0.6221 1.6789 -3.1639 38 1 3.1289 2.0621 -3.2188 39 1 3.3842 0.5390 -2.2108 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349429074.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:16 Heat of formation + Delta-G solvation = 34.284029 kcal Electronic energy + Delta-G solvation = -19716.158422 eV Core-core repulsion = 16854.197690 eV Total energy + Delta-G solvation = -2861.960732 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.82234 -39.58658 -37.55823 -34.85522 -34.44978 -32.85638 -31.81477 -28.12641 -25.87621 -24.16599 -23.24499 -23.09725 -22.73175 -21.36166 -20.28400 -18.22163 -17.91919 -17.69022 -16.77755 -16.26133 -15.95144 -15.61774 -15.32628 -14.88117 -14.50732 -14.23222 -13.81390 -13.53718 -13.36864 -13.00039 -12.84261 -12.69427 -12.55010 -12.38024 -12.24195 -12.08139 -11.94757 -11.86258 -11.69808 -11.48035 -11.22166 -11.00143 -10.68554 -9.79929 -9.07695 -8.85580 -8.10312 -5.89703 1.36268 1.42593 1.50300 2.32711 2.48644 2.73248 2.98038 3.14254 3.32376 3.44341 3.83185 4.01232 4.05988 4.14270 4.17873 4.25416 4.31820 4.33127 4.49132 4.51706 4.61688 4.67274 4.70949 4.88356 4.90207 5.01092 5.05835 5.12386 5.18341 5.26936 5.29564 5.48257 5.48784 5.51858 6.08227 6.25568 6.34208 7.09370 7.33273 7.79487 8.50150 8.93225 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.020212 B = 0.007928 C = 0.006681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.958544 B = 3531.149332 C = 4189.884733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.043 3.957 3 N -0.510 5.510 4 C 0.063 3.937 5 C 0.468 3.532 6 O -0.559 6.559 7 N -0.451 5.451 8 C -0.349 4.349 9 H 0.076 0.924 10 C 0.020 3.980 11 N -0.859 5.859 12 Si 0.959 3.041 13 H -0.260 1.260 14 H -0.297 1.297 15 H -0.277 1.277 16 C 0.046 3.954 17 C -0.175 4.175 18 C -0.181 4.181 19 C 0.018 3.982 20 C -0.166 4.166 21 C -0.211 4.211 22 H 0.058 0.942 23 H 0.083 0.917 24 H 0.042 0.958 25 H 0.055 0.945 26 H 0.077 0.923 27 H 0.091 0.909 28 H 0.065 0.935 29 H 0.254 0.746 30 H 0.127 0.873 31 H 0.078 0.922 32 H 0.118 0.882 33 H 0.124 0.876 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.123 0.877 37 H 0.105 0.895 38 H 0.091 0.909 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.947 -12.927 -6.237 14.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.084 4.084 3 N -0.234 5.234 4 C -0.068 4.068 5 C 0.256 3.744 6 O -0.438 6.438 7 N -0.173 5.173 8 C -0.477 4.477 9 H 0.094 0.906 10 C -0.187 4.187 11 N -0.495 5.495 12 Si 0.785 3.215 13 H -0.183 1.183 14 H -0.224 1.224 15 H -0.203 1.203 16 C -0.059 4.059 17 C -0.212 4.212 18 C -0.219 4.219 19 C -0.092 4.092 20 C -0.203 4.203 21 C -0.250 4.250 22 H 0.077 0.923 23 H 0.102 0.898 24 H 0.061 0.939 25 H 0.073 0.927 26 H 0.096 0.904 27 H 0.109 0.891 28 H 0.083 0.917 29 H 0.064 0.936 30 H 0.144 0.856 31 H 0.096 0.904 32 H 0.136 0.864 33 H 0.142 0.858 34 H 0.090 0.910 35 H 0.103 0.897 36 H 0.141 0.859 37 H 0.123 0.877 38 H 0.109 0.891 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.101 -12.146 -5.843 13.478 hybrid contribution 0.458 1.043 -0.297 1.177 sum 0.559 -11.103 -6.140 12.700 Atomic orbital electron populations 1.21875 0.93965 1.02321 1.02067 1.22309 0.97215 0.87329 1.01573 1.61557 1.19758 1.19141 1.22898 1.21823 0.89749 0.94588 1.00657 1.20490 0.82750 0.90737 0.80401 1.90466 1.50096 1.50847 1.52368 1.43068 1.11316 1.04477 1.58397 1.19083 1.01146 0.85456 1.41967 0.90614 1.25866 0.96503 1.02931 0.93377 1.70036 1.11738 1.36598 1.31152 0.85429 0.77794 0.80545 0.77751 1.18344 1.22357 1.20304 1.22005 0.85651 0.92873 1.05403 1.23138 1.00190 1.02436 0.95483 1.23306 1.01191 1.03263 0.94187 1.22539 1.05621 0.97375 0.83629 1.23559 0.94600 1.02257 0.99928 1.23351 0.94745 1.04040 1.02866 0.92263 0.89792 0.93868 0.92722 0.90438 0.89050 0.91682 0.93646 0.85554 0.90352 0.86421 0.85757 0.90960 0.89700 0.85883 0.87663 0.89097 0.88287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.46 9.37 71.98 0.67 -2.79 16 2 C 0.04 1.14 5.23 86.30 0.45 1.59 16 3 N -0.51 -18.93 4.40 -875.51 -3.85 -22.78 16 4 C 0.06 2.44 3.87 85.56 0.33 2.77 16 5 C 0.47 24.26 6.75 87.66 0.59 24.85 16 6 O -0.56 -34.19 12.11 -3.08 -0.04 -34.22 16 7 N -0.45 -22.86 2.88 -613.12 -1.77 -24.63 16 8 C -0.35 -19.62 7.94 84.04 0.67 -18.95 16 9 H 0.08 4.14 7.31 -2.91 -0.02 4.12 16 10 C 0.02 1.15 4.33 84.93 0.37 1.51 16 11 N -0.86 -54.02 11.42 21.67 0.25 -53.77 16 12 Si 0.96 47.18 29.60 68.60 2.03 49.21 16 13 H -0.26 -11.99 7.11 99.48 0.71 -11.29 16 14 H -0.30 -15.18 7.11 99.48 0.71 -14.47 16 15 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 16 C 0.05 1.77 6.01 44.99 0.27 2.04 16 17 C -0.17 -6.01 9.80 30.62 0.30 -5.71 16 18 C -0.18 -5.74 10.26 30.62 0.31 -5.43 16 19 C 0.02 0.64 5.04 44.91 0.23 0.87 16 20 C -0.17 -4.28 8.18 30.59 0.25 -4.03 16 21 C -0.21 -6.13 9.26 30.59 0.28 -5.84 16 22 H 0.06 1.45 5.85 -2.39 -0.01 1.44 16 23 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 24 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.05 1.24 5.78 -2.39 -0.01 1.23 16 26 H 0.08 1.92 7.72 -2.39 -0.02 1.90 16 27 H 0.09 3.31 7.25 -2.39 -0.02 3.30 16 28 H 0.07 2.22 6.85 -2.39 -0.02 2.21 16 29 H 0.25 15.63 8.32 -92.71 -0.77 14.86 16 30 H 0.13 4.14 6.78 -2.39 -0.02 4.12 16 31 H 0.08 3.16 6.81 -2.38 -0.02 3.14 16 32 H 0.12 3.20 8.14 -2.39 -0.02 3.18 16 33 H 0.12 2.94 8.14 -2.39 -0.02 2.92 16 34 H 0.07 2.59 8.14 -2.38 -0.02 2.57 16 35 H 0.09 3.90 7.14 -2.39 -0.02 3.88 16 36 H 0.12 2.65 4.79 -2.39 -0.01 2.64 16 37 H 0.11 2.44 8.14 -2.39 -0.02 2.43 16 38 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 39 H 0.10 2.62 7.17 -2.38 -0.02 2.60 16 Total: -1.00 -74.02 306.52 2.39 -71.64 By element: Atomic # 1 Polarization: 22.64 SS G_CDS: 1.03 Total: 23.67 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: 4.73 Total: -9.12 kcal Atomic # 7 Polarization: -95.81 SS G_CDS: -5.37 Total: -101.17 kcal Atomic # 8 Polarization: -34.19 SS G_CDS: -0.04 Total: -34.22 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 2.03 Total: 49.21 kcal Total: -74.02 2.39 -71.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349429074.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.919 kcal (2) G-P(sol) polarization free energy of solvation -74.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds