Wall clock time and date at job start Sun Mar 29 2020 23:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46895 * 111.00196 * 2 1 4 4 C 1.53006 * 109.46752 * 287.58938 * 3 2 1 5 5 H 1.09004 * 109.47124 * 55.00359 * 4 3 2 6 6 C 1.47195 * 109.47237 * 295.00086 * 4 3 2 7 7 N 3.66495 * 117.79682 * 282.91285 * 2 1 3 8 8 C 1.52999 * 109.47021 * 174.99865 * 4 3 2 9 9 C 1.50693 * 109.47490 * 185.00012 * 8 4 3 10 10 H 1.08007 * 119.99596 * 0.02562 * 9 8 4 11 11 C 1.37878 * 120.00484 * 179.97438 * 9 8 4 12 12 N 1.31517 * 119.99510 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00224 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47194 * 59.99952 * 13 11 9 15 15 H 1.48498 * 109.47103 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.46999 * 299.99865 * 13 11 9 17 17 C 1.46901 * 110.99582 * 123.95497 * 2 1 3 18 18 H 1.08997 * 110.02103 * 43.87101 * 17 2 1 19 19 C 1.54271 * 110.03140 * 282.47718 * 17 2 1 20 20 C 1.54967 * 104.16069 * 217.14088 * 19 17 2 21 21 C 1.54883 * 102.77874 * 37.88843 * 20 19 17 22 22 C 1.53878 * 110.03102 * 165.26470 * 17 2 1 23 23 H 1.09001 * 110.03035 * 238.61539 * 22 17 2 24 24 O 1.42901 * 110.03291 * 359.97438 * 22 17 2 25 25 H 1.09004 * 109.47166 * 65.11871 * 1 2 3 26 26 H 1.08999 * 109.47745 * 185.11495 * 1 2 3 27 27 H 1.09000 * 109.47210 * 305.11922 * 1 2 3 28 28 H 1.09004 * 109.47186 * 167.59590 * 3 2 1 29 29 H 1.08998 * 109.47457 * 47.58798 * 3 2 1 30 30 H 1.09000 * 109.47424 * 305.00762 * 8 4 3 31 31 H 1.09005 * 109.46984 * 65.00056 * 8 4 3 32 32 H 0.97003 * 119.99499 * 180.02562 * 12 11 9 33 33 H 1.09003 * 110.48558 * 335.78859 * 19 17 2 34 34 H 1.08994 * 110.48385 * 98.42556 * 19 17 2 35 35 H 1.08999 * 110.71723 * 279.56893 * 20 19 17 36 36 H 1.09003 * 110.91984 * 156.29921 * 20 19 17 37 37 H 1.08999 * 110.48697 * 203.41016 * 21 20 19 38 38 H 1.09007 * 110.48796 * 80.75907 * 21 20 19 39 39 H 0.96696 * 113.99648 * 179.97438 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.7712 2.0037 -1.3751 5 1 0.7142 1.9439 -1.6345 6 6 2.5652 1.2817 -2.3825 7 7 3.1781 0.7245 -3.1601 8 6 2.2053 3.4703 -1.3390 9 6 1.8714 4.1257 -2.6542 10 1 1.3967 3.5534 -3.4375 11 6 2.1710 5.4561 -2.8573 12 7 2.7486 6.1531 -1.9033 13 14 1.7565 6.2686 -4.4875 14 1 0.2921 6.1909 -4.7210 15 1 2.1779 7.6921 -4.4524 16 1 2.4707 5.5684 -5.5853 17 6 1.9953 -0.7660 1.1376 18 1 1.4398 -1.6971 1.2496 19 6 1.8923 0.0696 2.4303 20 6 3.1799 -0.2866 3.2156 21 6 4.2434 -0.4019 2.0955 22 6 3.4895 -1.0661 0.9249 23 1 3.6590 -2.1428 0.9336 24 8 3.9279 -0.5123 -0.3174 25 1 -0.3634 0.4324 -0.9323 26 1 -0.3634 -1.0235 0.0916 27 1 -0.3633 0.5912 0.8406 28 1 3.0627 1.3509 0.2208 29 1 1.4786 1.9590 0.7587 30 1 1.6812 3.9846 -0.5334 31 1 3.2802 3.5270 -1.1673 32 1 2.9591 7.0892 -2.0461 33 1 1.8707 1.1339 2.1959 34 1 1.0069 -0.2148 2.9987 35 1 3.0633 -1.2367 3.7369 36 1 3.4408 0.5070 3.9158 37 1 5.0729 -1.0300 2.4202 38 1 4.6020 0.5862 1.8066 39 1 4.8629 -0.6678 -0.5091 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352662313.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:27:20 Heat of formation + Delta-G solvation = -24.514427 kcal Electronic energy + Delta-G solvation = -19396.129628 eV Core-core repulsion = 16531.619204 eV Total energy + Delta-G solvation = -2864.510424 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.72875 -36.67043 -35.32520 -34.23008 -33.32570 -31.44833 -27.93416 -27.57840 -27.19294 -24.67156 -22.45942 -21.65598 -20.72884 -19.22518 -17.58123 -16.44730 -16.21716 -15.84256 -15.03239 -14.56152 -14.47843 -14.09044 -13.88349 -13.47601 -12.92856 -12.56227 -12.37572 -12.27949 -12.10683 -11.72752 -11.48302 -11.26067 -11.20754 -11.15946 -11.00513 -10.93928 -10.68134 -10.59161 -10.44307 -10.34853 -9.96380 -9.58338 -9.39060 -9.11944 -8.38056 -7.90396 -6.02442 -4.04688 3.35851 3.39548 3.43918 3.97001 4.08715 4.17473 4.45294 4.47367 4.55905 4.62733 4.96552 5.17329 5.21367 5.30045 5.35575 5.36812 5.49134 5.54482 5.66246 5.70980 5.76783 5.87647 5.88420 5.94992 6.01434 6.08737 6.17263 6.26249 6.33186 6.66160 6.68745 7.32398 7.41938 7.52868 7.65741 7.93771 7.96376 8.33261 8.90473 9.01225 9.60004 11.08585 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.029202 B = 0.005577 C = 0.005462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.610180 B = 5019.221048 C = 5125.499007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.518 5.518 3 C 0.068 3.932 4 C 0.014 3.986 5 H 0.092 0.908 6 C 0.268 3.732 7 N -0.484 5.484 8 C 0.033 3.967 9 C -0.522 4.522 10 H 0.055 0.945 11 C 0.062 3.938 12 N -0.894 5.894 13 Si 0.891 3.109 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.277 1.277 17 C 0.090 3.910 18 H 0.083 0.917 19 C -0.166 4.166 20 C -0.118 4.118 21 C -0.162 4.162 22 C 0.108 3.892 23 H 0.052 0.948 24 O -0.528 6.528 25 H 0.072 0.928 26 H 0.059 0.941 27 H 0.025 0.975 28 H 0.092 0.908 29 H 0.044 0.956 30 H 0.033 0.967 31 H 0.025 0.975 32 H 0.262 0.738 33 H 0.083 0.917 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.079 0.921 39 H 0.365 0.635 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.401 -12.970 12.002 17.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.240 5.240 3 C -0.060 4.060 4 C -0.008 4.008 5 H 0.109 0.891 6 C -0.049 4.049 7 N -0.162 5.162 8 C -0.006 4.006 9 C -0.561 4.561 10 H 0.074 0.926 11 C -0.140 4.140 12 N -0.533 5.533 13 Si 0.718 3.282 14 H -0.201 1.201 15 H -0.213 1.213 16 H -0.202 1.202 17 C -0.020 4.020 18 H 0.101 0.899 19 C -0.205 4.205 20 C -0.156 4.156 21 C -0.200 4.200 22 C 0.047 3.953 23 H 0.070 0.930 24 O -0.331 6.331 25 H 0.091 0.909 26 H 0.078 0.922 27 H 0.044 0.956 28 H 0.110 0.890 29 H 0.062 0.938 30 H 0.051 0.949 31 H 0.043 0.957 32 H 0.071 0.929 33 H 0.102 0.898 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.098 0.902 39 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -0.896 -13.681 10.383 17.198 hybrid contribution -0.157 0.947 0.304 1.007 sum -1.052 -12.735 10.687 16.658 Atomic orbital electron populations 1.22476 0.88120 1.00978 1.01332 1.61989 1.06604 1.14829 1.40622 1.22308 1.01634 0.86558 0.95496 1.19128 0.97421 0.96098 0.88184 0.89060 1.28566 0.92781 0.90873 0.92697 1.80887 1.10886 1.12313 1.12065 1.19136 0.97599 0.85790 0.98073 1.21133 1.40025 0.95298 0.99606 0.92627 1.24949 0.95000 0.97396 0.96653 1.69939 1.41920 1.08770 1.32640 0.86668 0.78901 0.78269 0.84313 1.20111 1.21259 1.20230 1.22408 0.94001 0.96976 0.88606 0.89891 1.23209 0.98012 1.02224 0.97008 1.22314 0.94899 1.01285 0.97089 1.23212 0.98248 1.02085 0.96486 1.22395 0.93382 0.95509 0.83982 0.92960 1.86883 1.29644 1.79191 1.37410 0.90943 0.92205 0.95634 0.88972 0.93756 0.94878 0.95708 0.92866 0.89829 0.91645 0.91710 0.91438 0.91730 0.90228 0.78939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.16 60.06 0.55 0.79 16 2 N -0.52 -7.47 3.77 -233.54 -0.88 -8.35 16 3 C 0.07 1.11 2.49 -3.82 -0.01 1.10 16 4 C 0.01 0.27 2.23 -93.41 -0.21 0.07 16 5 H 0.09 1.74 6.71 -51.93 -0.35 1.40 16 6 C 0.27 5.94 12.88 -20.76 -0.27 5.67 16 7 N -0.48 -11.46 18.54 42.15 0.78 -10.68 16 8 C 0.03 0.79 4.42 -27.89 -0.12 0.67 16 9 C -0.52 -14.37 8.60 -34.44 -0.30 -14.66 16 10 H 0.06 1.53 7.59 -52.48 -0.40 1.13 16 11 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 12 N -0.89 -26.09 13.29 55.43 0.74 -25.36 16 13 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 15 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 16 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 17 C 0.09 1.06 2.93 -66.59 -0.20 0.87 16 18 H 0.08 0.90 7.85 -51.93 -0.41 0.49 16 19 C -0.17 -1.74 5.85 -25.03 -0.15 -1.89 16 20 C -0.12 -1.08 6.91 -24.70 -0.17 -1.25 16 21 C -0.16 -1.62 6.39 -25.07 -0.16 -1.78 16 22 C 0.11 1.23 3.89 -25.61 -0.10 1.14 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 24 O -0.53 -7.56 9.47 -35.23 -0.33 -7.90 16 25 H 0.07 0.97 6.83 -51.93 -0.35 0.61 16 26 H 0.06 0.66 7.90 -51.93 -0.41 0.25 16 27 H 0.03 0.30 7.83 -51.93 -0.41 -0.11 16 28 H 0.09 1.57 5.66 -51.93 -0.29 1.28 16 29 H 0.04 0.68 6.42 -51.93 -0.33 0.35 16 30 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.02 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 33 H 0.08 1.01 5.31 -51.93 -0.28 0.73 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.91 7.87 -51.93 -0.41 0.50 16 39 H 0.37 4.21 9.11 45.56 0.42 4.63 16 LS Contribution 311.51 15.07 4.69 4.69 Total: -1.00 -31.51 311.51 -6.56 -38.07 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -5.32 Total: 0.44 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: -1.22 Total: -7.64 kcal Atomic # 7 Polarization: -45.02 SS G_CDS: 0.64 Total: -44.38 kcal Atomic # 8 Polarization: -7.56 SS G_CDS: -0.33 Total: -7.90 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.51 -6.56 -38.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352662313.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.555 kcal (2) G-P(sol) polarization free energy of solvation -31.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds