Wall clock time and date at job start Sun Mar 29 2020 23:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46851 * 111.00029 * 2 1 4 4 C 1.53094 * 109.48680 * 173.83772 * 3 2 1 5 5 C 1.52851 * 109.26785 * 58.67095 * 4 3 2 6 6 C 1.54073 * 109.62079 * 182.51993 * 5 4 3 7 7 C 1.55211 * 102.87530 * 262.39014 * 6 5 4 8 8 C 1.54932 * 101.61076 * 324.71679 * 7 6 5 9 9 N 1.46771 * 110.04757 * 64.43620 * 5 4 3 10 10 C 1.34778 * 125.70263 * 300.52192 * 9 5 4 11 11 O 1.21688 * 119.99724 * 357.15129 * 10 9 5 12 12 C 1.46372 * 120.00145 * 177.15041 * 10 9 5 13 13 H 1.08000 * 119.99799 * 359.97438 * 12 10 9 14 14 C 1.40052 * 120.00256 * 180.02562 * 12 10 9 15 15 N 1.30671 * 119.99729 * 359.97438 * 14 12 10 16 16 Si 1.86803 * 119.99858 * 179.97438 * 14 12 10 17 17 H 1.48493 * 109.47133 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.46845 * 119.99919 * 16 14 12 19 19 H 1.48497 * 109.46990 * 239.99512 * 16 14 12 20 20 C 1.52853 * 109.92206 * 303.08260 * 5 4 3 21 21 C 1.46843 * 111.00039 * 235.68437 * 2 1 3 22 22 H 1.09002 * 109.47175 * 60.00079 * 1 2 3 23 23 H 1.08994 * 109.46778 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.46810 * 299.99803 * 1 2 3 25 25 H 1.08999 * 109.46922 * 53.83185 * 3 2 1 26 26 H 1.09007 * 109.46882 * 293.84164 * 3 2 1 27 27 H 1.08993 * 109.50671 * 298.73132 * 4 3 2 28 28 H 1.08996 * 109.50527 * 178.60014 * 4 3 2 29 29 H 1.09004 * 110.73051 * 144.04927 * 6 5 4 30 30 H 1.08995 * 110.73330 * 20.74368 * 6 5 4 31 31 H 1.08997 * 111.00085 * 206.63045 * 7 6 5 32 32 H 1.08999 * 110.99681 * 82.79164 * 7 6 5 33 33 H 1.09004 * 110.36585 * 155.71496 * 8 7 6 34 34 H 1.09006 * 110.36260 * 278.02811 * 8 7 6 35 35 H 0.96995 * 119.99827 * 180.02562 * 15 14 12 36 36 H 1.09002 * 109.50122 * 176.85459 * 20 5 4 37 37 H 1.08998 * 109.49987 * 296.97339 * 20 5 4 38 38 H 1.08998 * 109.47223 * 306.16844 * 21 2 1 39 39 H 1.09005 * 109.46508 * 66.15075 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5179 1.3335 0.1549 5 6 4.1219 0.5243 -0.9926 6 6 5.6488 0.4280 -0.8101 7 6 6.1793 1.5573 -1.7333 8 6 5.1674 1.5032 -2.9053 9 7 3.8709 1.1997 -2.2712 10 6 2.6582 1.4939 -2.7806 11 8 1.6509 1.1489 -2.1914 12 6 2.5529 2.2283 -4.0423 13 1 3.4469 2.5349 -4.5649 14 6 1.2928 2.5345 -4.5713 15 7 0.2111 2.1640 -3.9387 16 14 1.1585 3.4724 -6.1812 17 1 2.5193 3.7739 -6.6934 18 1 0.4264 2.6470 -7.1753 19 1 0.4228 4.7422 -5.9544 20 6 3.5179 -0.8796 -1.0142 21 6 1.9953 -0.7728 -1.1323 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.5593 1.9275 0.8296 26 1 1.7377 1.8590 -0.9400 27 1 3.7757 0.8659 1.1051 28 1 3.9114 2.3497 0.1300 29 1 6.0162 -0.5440 -1.1393 30 1 5.9260 0.6153 0.2272 31 1 7.1894 1.3371 -2.0788 32 1 6.1423 2.5232 -1.2297 33 1 5.1247 2.4661 -3.4143 34 1 5.4407 0.7144 -3.6063 35 1 -0.6616 2.3757 -4.3053 36 1 3.9113 -1.4319 -1.8676 37 1 3.7758 -1.4009 -0.0924 38 1 1.5593 -1.7718 -1.1243 39 1 1.7375 -0.2716 -2.0653 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357602361.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:53 Heat of formation + Delta-G solvation = 45.930368 kcal Electronic energy + Delta-G solvation = -20856.028844 eV Core-core repulsion = 17994.573136 eV Total energy + Delta-G solvation = -2861.455708 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.20647 -36.48731 -35.76761 -32.69056 -31.51765 -30.47492 -29.87219 -26.50154 -26.35761 -23.65026 -22.34905 -21.86088 -20.62896 -19.96867 -17.31540 -16.54222 -16.13256 -15.56907 -14.87984 -14.64188 -14.31694 -13.68023 -13.25152 -12.93540 -12.80651 -12.57793 -12.15891 -11.78315 -11.60364 -11.47874 -11.37932 -11.22031 -11.16437 -10.90537 -10.78721 -10.51916 -10.35896 -10.30913 -9.86333 -9.55843 -9.47557 -9.27386 -8.71620 -7.70876 -6.65229 -6.63186 -6.14264 -4.74052 3.03519 3.14013 3.17298 3.97845 4.24939 4.49304 5.13200 5.21386 5.25812 5.31419 5.53023 5.70220 5.82242 5.89565 6.08790 6.11546 6.19713 6.31037 6.37824 6.41063 6.48651 6.50861 6.59645 6.62699 6.64754 6.71316 6.81097 6.93652 7.05927 7.09428 7.29191 7.38731 7.66638 8.13285 8.18877 8.35322 8.36218 8.46496 8.88759 9.35772 10.37755 10.55953 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.020738 B = 0.010629 C = 0.007737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.833414 B = 2633.673899 C = 3617.900690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.525 5.525 3 C -0.019 4.019 4 C -0.103 4.103 5 C 0.170 3.830 6 C -0.124 4.124 7 C -0.135 4.135 8 C 0.119 3.881 9 N -0.628 5.628 10 C 0.549 3.451 11 O -0.509 6.509 12 C -0.528 4.528 13 H 0.070 0.930 14 C 0.088 3.912 15 N -0.764 5.764 16 Si 0.907 3.093 17 H -0.264 1.264 18 H -0.276 1.276 19 H -0.276 1.276 20 C -0.104 4.104 21 C -0.021 4.021 22 H 0.042 0.958 23 H 0.041 0.959 24 H 0.041 0.959 25 H 0.023 0.977 26 H 0.155 0.845 27 H 0.048 0.952 28 H 0.051 0.949 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.047 0.953 35 H 0.270 0.730 36 H 0.050 0.950 37 H 0.048 0.952 38 H 0.022 0.978 39 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.155 -1.008 2.352 7.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.249 5.249 3 C -0.145 4.145 4 C -0.142 4.142 5 C 0.084 3.916 6 C -0.162 4.162 7 C -0.173 4.173 8 C -0.006 4.006 9 N -0.365 5.365 10 C 0.363 3.637 11 O -0.399 6.399 12 C -0.565 4.565 13 H 0.089 0.911 14 C -0.132 4.132 15 N -0.392 5.392 16 Si 0.732 3.268 17 H -0.188 1.188 18 H -0.201 1.201 19 H -0.201 1.201 20 C -0.143 4.143 21 C -0.147 4.147 22 H 0.061 0.939 23 H 0.060 0.940 24 H 0.060 0.940 25 H 0.041 0.959 26 H 0.169 0.831 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.065 0.935 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.040 0.960 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 6.523 -1.398 3.055 7.337 hybrid contribution -0.160 0.612 -1.123 1.289 sum 6.363 -0.785 1.932 6.696 Atomic orbital electron populations 1.22067 0.89700 0.99435 1.00079 1.62269 1.06093 1.13976 1.42600 1.24052 0.92514 0.91965 1.05924 1.21793 0.97391 0.98407 0.96565 1.20585 0.92488 0.92404 0.86094 1.22664 0.95177 0.98690 0.99660 1.22788 0.98273 0.98938 0.97272 1.21906 0.84054 1.00200 0.94424 1.48439 1.05523 1.62705 1.19787 1.17753 0.79935 0.80250 0.85763 1.89742 1.36860 1.53439 1.59885 1.20983 0.93080 1.36599 1.05799 0.91143 1.25691 0.95305 0.94366 0.97876 1.69953 0.98245 1.35089 1.35885 0.86303 0.79109 0.79493 0.81868 1.18787 1.20142 1.20149 1.21799 0.97481 0.95514 0.99474 1.24124 0.92488 0.95975 1.02087 0.93897 0.93978 0.94024 0.95887 0.83109 0.93364 0.93062 0.91481 0.91286 0.91273 0.91334 0.91284 0.93517 0.91895 0.93118 0.93355 0.95956 0.82848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 9.42 60.07 0.57 1.34 16 2 N -0.53 -11.78 4.85 -242.88 -1.18 -12.96 16 3 C -0.02 -0.43 5.03 -3.80 -0.02 -0.45 16 4 C -0.10 -2.05 4.90 -26.76 -0.13 -2.18 16 5 C 0.17 3.27 0.78 -131.26 -0.10 3.17 16 6 C -0.12 -1.89 6.01 -25.00 -0.15 -2.04 16 7 C -0.13 -1.92 7.09 -24.54 -0.17 -2.10 16 8 C 0.12 2.09 6.58 -2.48 -0.02 2.08 16 9 N -0.63 -13.38 2.82 -157.86 -0.45 -13.82 16 10 C 0.55 13.90 6.42 -12.99 -0.08 13.81 16 11 O -0.51 -13.54 5.10 5.20 0.03 -13.51 16 12 C -0.53 -13.60 9.00 -35.63 -0.32 -13.92 16 13 H 0.07 1.72 6.58 -52.49 -0.35 1.37 16 14 C 0.09 2.24 5.50 -17.37 -0.10 2.15 16 15 N -0.76 -20.57 11.83 55.55 0.66 -19.91 16 16 Si 0.91 18.97 29.56 -169.99 -5.02 13.94 16 17 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 18 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 19 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 20 C -0.10 -2.08 4.91 -26.76 -0.13 -2.21 16 21 C -0.02 -0.49 5.03 -3.81 -0.02 -0.51 16 22 H 0.04 1.03 7.40 -51.93 -0.38 0.65 16 23 H 0.04 0.83 8.09 -51.93 -0.42 0.41 16 24 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 25 H 0.02 0.51 8.12 -51.93 -0.42 0.09 16 26 H 0.15 4.03 3.56 17.24 0.06 4.09 16 27 H 0.05 0.91 8.12 -51.93 -0.42 0.49 16 28 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.07 0.96 7.84 -51.93 -0.41 0.55 16 30 H 0.07 0.96 7.79 -51.93 -0.40 0.56 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.07 1.24 7.04 -51.93 -0.37 0.87 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.27 6.72 8.29 -40.82 -0.34 6.38 16 36 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.02 0.49 8.08 -51.93 -0.42 0.07 16 39 H 0.16 4.10 3.59 17.07 0.06 4.16 16 LS Contribution 287.64 15.07 4.33 4.33 Total: -1.00 -27.51 287.64 -7.87 -35.38 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -5.56 Total: 7.40 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -0.68 Total: -0.85 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: -0.97 Total: -46.69 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: 0.03 Total: -13.51 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.02 Total: 13.94 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -27.51 -7.87 -35.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357602361.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.308 kcal (2) G-P(sol) polarization free energy of solvation -27.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds