Wall clock time and date at job start Sun Mar 29 2020 23:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46851 * 111.00029 * 2 1 4 4 C 1.53094 * 109.48680 * 173.83772 * 3 2 1 5 5 C 1.52851 * 109.26785 * 58.67095 * 4 3 2 6 6 C 1.54073 * 109.62079 * 182.51993 * 5 4 3 7 7 C 1.55211 * 102.87530 * 262.39014 * 6 5 4 8 8 C 1.54932 * 101.61076 * 324.71679 * 7 6 5 9 9 N 1.46771 * 110.04757 * 64.43620 * 5 4 3 10 10 C 1.34778 * 125.70263 * 300.52192 * 9 5 4 11 11 O 1.21688 * 119.99724 * 357.15129 * 10 9 5 12 12 C 1.46372 * 120.00145 * 177.15041 * 10 9 5 13 13 H 1.08000 * 119.99799 * 359.97438 * 12 10 9 14 14 C 1.40052 * 120.00256 * 180.02562 * 12 10 9 15 15 N 1.30671 * 119.99729 * 359.97438 * 14 12 10 16 16 Si 1.86803 * 119.99858 * 179.97438 * 14 12 10 17 17 H 1.48493 * 109.47133 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.46845 * 119.99919 * 16 14 12 19 19 H 1.48497 * 109.46990 * 239.99512 * 16 14 12 20 20 C 1.52853 * 109.92206 * 303.08260 * 5 4 3 21 21 C 1.46843 * 111.00039 * 235.68437 * 2 1 3 22 22 H 1.09002 * 109.47175 * 60.00079 * 1 2 3 23 23 H 1.08994 * 109.46778 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.46810 * 299.99803 * 1 2 3 25 25 H 1.08999 * 109.46922 * 53.83185 * 3 2 1 26 26 H 1.09007 * 109.46882 * 293.84164 * 3 2 1 27 27 H 1.08993 * 109.50671 * 298.73132 * 4 3 2 28 28 H 1.08996 * 109.50527 * 178.60014 * 4 3 2 29 29 H 1.09004 * 110.73051 * 144.04927 * 6 5 4 30 30 H 1.08995 * 110.73330 * 20.74368 * 6 5 4 31 31 H 1.08997 * 111.00085 * 206.63045 * 7 6 5 32 32 H 1.08999 * 110.99681 * 82.79164 * 7 6 5 33 33 H 1.09004 * 110.36585 * 155.71496 * 8 7 6 34 34 H 1.09006 * 110.36260 * 278.02811 * 8 7 6 35 35 H 0.96995 * 119.99827 * 180.02562 * 15 14 12 36 36 H 1.09002 * 109.50122 * 176.85459 * 20 5 4 37 37 H 1.08998 * 109.49987 * 296.97339 * 20 5 4 38 38 H 1.08998 * 109.47223 * 306.16844 * 21 2 1 39 39 H 1.09005 * 109.46508 * 66.15075 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5179 1.3335 0.1549 5 6 4.1219 0.5243 -0.9926 6 6 5.6488 0.4280 -0.8101 7 6 6.1793 1.5573 -1.7333 8 6 5.1674 1.5032 -2.9053 9 7 3.8709 1.1997 -2.2712 10 6 2.6582 1.4939 -2.7806 11 8 1.6509 1.1489 -2.1914 12 6 2.5529 2.2283 -4.0423 13 1 3.4469 2.5349 -4.5649 14 6 1.2928 2.5345 -4.5713 15 7 0.2111 2.1640 -3.9387 16 14 1.1585 3.4724 -6.1812 17 1 2.5193 3.7739 -6.6934 18 1 0.4264 2.6470 -7.1753 19 1 0.4228 4.7422 -5.9544 20 6 3.5179 -0.8796 -1.0142 21 6 1.9953 -0.7728 -1.1323 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.5593 1.9275 0.8296 26 1 1.7377 1.8590 -0.9400 27 1 3.7757 0.8659 1.1051 28 1 3.9114 2.3497 0.1300 29 1 6.0162 -0.5440 -1.1393 30 1 5.9260 0.6153 0.2272 31 1 7.1894 1.3371 -2.0788 32 1 6.1423 2.5232 -1.2297 33 1 5.1247 2.4661 -3.4143 34 1 5.4407 0.7144 -3.6063 35 1 -0.6616 2.3757 -4.3053 36 1 3.9113 -1.4319 -1.8676 37 1 3.7758 -1.4009 -0.0924 38 1 1.5593 -1.7718 -1.1243 39 1 1.7375 -0.2716 -2.0653 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357602361.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:53 Heat of formation + Delta-G solvation = 27.948534 kcal Electronic energy + Delta-G solvation = -20856.808595 eV Core-core repulsion = 17994.573136 eV Total energy + Delta-G solvation = -2862.235459 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.86183 -38.10062 -37.55168 -34.61546 -33.12456 -31.96336 -31.57747 -28.26271 -28.07677 -25.23795 -24.03871 -23.50617 -22.18772 -21.57105 -19.09443 -18.20759 -17.91615 -17.34578 -16.62439 -16.20664 -16.04799 -15.36082 -14.92516 -14.54926 -14.32563 -13.95707 -13.76458 -13.42618 -13.27532 -13.14001 -13.10666 -12.90793 -12.74342 -12.53383 -12.29806 -12.21872 -11.87154 -11.79361 -11.48795 -11.28893 -11.08829 -10.84355 -10.53347 -9.57682 -8.54759 -8.34867 -8.03608 -6.71463 1.37088 1.40941 1.54989 2.23703 2.38989 2.91714 3.51023 3.53135 3.82950 3.89072 4.04249 4.24567 4.34095 4.49115 4.56963 4.72065 4.74550 4.80933 4.85592 4.87991 4.94520 4.95983 5.05235 5.09928 5.12243 5.17352 5.22549 5.35657 5.37810 5.41953 5.51223 5.71321 5.91030 6.20167 6.27916 6.54137 6.60711 6.61850 6.94429 7.58262 8.50735 8.69498 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.020738 B = 0.010629 C = 0.007737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.833414 B = 2633.673899 C = 3617.900690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.519 5.519 3 C -0.018 4.018 4 C -0.097 4.097 5 C 0.161 3.839 6 C -0.114 4.114 7 C -0.119 4.119 8 C 0.109 3.891 9 N -0.634 5.634 10 C 0.533 3.467 11 O -0.526 6.526 12 C -0.556 4.556 13 H 0.077 0.923 14 C 0.040 3.960 15 N -0.810 5.810 16 Si 0.982 3.018 17 H -0.253 1.253 18 H -0.273 1.273 19 H -0.273 1.273 20 C -0.099 4.099 21 C -0.021 4.021 22 H 0.006 0.994 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.020 0.980 26 H 0.120 0.880 27 H 0.065 0.935 28 H 0.053 0.947 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.105 0.895 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.052 0.948 35 H 0.272 0.728 36 H 0.052 0.948 37 H 0.065 0.935 38 H 0.020 0.980 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.620 -1.145 2.750 10.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.243 5.243 3 C -0.144 4.144 4 C -0.136 4.136 5 C 0.076 3.924 6 C -0.152 4.152 7 C -0.157 4.157 8 C -0.014 4.014 9 N -0.369 5.369 10 C 0.344 3.656 11 O -0.417 6.417 12 C -0.592 4.592 13 H 0.095 0.905 14 C -0.176 4.176 15 N -0.439 5.439 16 Si 0.803 3.197 17 H -0.176 1.176 18 H -0.198 1.198 19 H -0.198 1.198 20 C -0.137 4.137 21 C -0.146 4.146 22 H 0.025 0.975 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.039 0.961 26 H 0.135 0.865 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.101 0.899 30 H 0.109 0.891 31 H 0.123 0.877 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.038 0.962 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 9.028 -1.541 3.464 9.792 hybrid contribution -0.956 0.609 -1.187 1.641 sum 8.072 -0.932 2.277 8.439 Atomic orbital electron populations 1.22044 0.89546 1.00059 0.99065 1.62361 1.06309 1.13689 1.41983 1.23867 0.94988 0.91748 1.03840 1.21749 0.95000 0.99020 0.97797 1.20805 0.95566 0.91275 0.84753 1.22643 0.91398 0.99902 1.01260 1.22749 0.98830 0.98846 0.95284 1.22135 0.83424 0.99874 0.96004 1.48370 1.05638 1.62199 1.20692 1.17941 0.81107 0.80565 0.86029 1.89832 1.38124 1.53557 1.60182 1.21376 0.93689 1.37442 1.06723 0.90497 1.26639 0.94723 0.94923 1.01301 1.70094 0.98834 1.37018 1.37967 0.85178 0.79404 0.77865 0.77210 1.17646 1.19819 1.19823 1.21759 0.95131 0.96510 1.00338 1.23934 0.94931 0.95241 1.00543 0.97543 0.92497 0.92394 0.96140 0.86531 0.91654 0.92820 0.89914 0.89144 0.87685 0.91126 0.92204 0.92955 0.91800 0.92883 0.91678 0.96185 0.86241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.83 9.42 127.69 1.20 3.04 16 2 N -0.52 -23.34 4.85 -922.35 -4.47 -27.81 16 3 C -0.02 -0.84 5.03 86.34 0.43 -0.41 16 4 C -0.10 -3.71 4.90 30.58 0.15 -3.56 16 5 C 0.16 5.88 0.78 3.82 0.00 5.88 16 6 C -0.11 -2.99 6.01 31.72 0.19 -2.80 16 7 C -0.12 -2.93 7.09 32.01 0.23 -2.71 16 8 C 0.11 3.66 6.58 86.85 0.57 4.23 16 9 N -0.63 -26.68 2.82 -771.58 -2.18 -28.86 16 10 C 0.53 27.70 6.42 86.36 0.55 28.25 16 11 O -0.53 -29.23 5.10 -4.31 -0.02 -29.26 16 12 C -0.56 -29.36 9.00 24.83 0.22 -29.13 16 13 H 0.08 3.80 6.58 -2.91 -0.02 3.78 16 14 C 0.04 2.10 5.50 85.31 0.47 2.57 16 15 N -0.81 -45.66 11.83 21.84 0.26 -45.40 16 16 Si 0.98 39.64 29.56 68.60 2.03 41.66 16 17 H -0.25 -9.64 7.11 99.48 0.71 -8.93 16 18 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 19 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 20 C -0.10 -3.78 4.91 30.58 0.15 -3.63 16 21 C -0.02 -0.94 5.03 86.34 0.43 -0.51 16 22 H 0.01 0.30 7.40 -2.39 -0.02 0.28 16 23 H 0.06 2.26 8.09 -2.39 -0.02 2.24 16 24 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 25 H 0.02 0.91 8.12 -2.39 -0.02 0.89 16 26 H 0.12 6.50 3.56 6.50 0.02 6.52 16 27 H 0.06 2.27 8.12 -2.39 -0.02 2.25 16 28 H 0.05 2.00 8.14 -2.39 -0.02 1.99 16 29 H 0.08 1.95 7.84 -2.38 -0.02 1.93 16 30 H 0.09 2.04 7.79 -2.39 -0.02 2.03 16 31 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.06 2.09 7.04 -2.38 -0.02 2.07 16 34 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 35 H 0.27 14.18 8.29 -92.71 -0.77 13.41 16 36 H 0.05 1.98 8.14 -2.39 -0.02 1.97 16 37 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.02 0.89 8.08 -2.39 -0.02 0.87 16 39 H 0.12 6.66 3.59 3.88 0.01 6.67 16 Total: -1.00 -62.11 287.64 1.31 -60.80 By element: Atomic # 1 Polarization: 26.55 SS G_CDS: 1.08 Total: 27.63 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: 4.61 Total: 1.23 kcal Atomic # 7 Polarization: -95.68 SS G_CDS: -6.39 Total: -102.07 kcal Atomic # 8 Polarization: -29.23 SS G_CDS: -0.02 Total: -29.26 kcal Atomic # 14 Polarization: 39.64 SS G_CDS: 2.03 Total: 41.66 kcal Total: -62.11 1.31 -60.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357602361.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.748 kcal (2) G-P(sol) polarization free energy of solvation -62.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds