Wall clock time and date at job start Sun Mar 29 2020 23:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46506 * 119.99934 * 2 1 4 4 C 1.50696 * 109.46871 * 269.99575 * 3 2 1 5 5 H 1.07999 * 120.00319 * 0.02562 * 4 3 2 6 6 C 1.37885 * 119.99717 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99913 * 180.02562 * 6 4 3 8 8 Si 1.86798 * 119.99766 * 0.02562 * 6 4 3 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 C 1.34772 * 119.99867 * 180.02562 * 2 1 3 13 13 O 1.21290 * 119.99908 * 180.02562 * 12 2 1 14 14 C 1.50697 * 120.00198 * 359.97438 * 12 2 1 15 15 C 1.52997 * 109.47538 * 180.02562 * 14 12 2 16 16 N 1.46895 * 109.47430 * 180.02562 * 15 14 12 17 17 C 1.48561 * 111.00057 * 170.00280 * 16 15 14 18 18 C 1.54376 * 104.59474 * 200.95867 * 17 16 15 19 19 H 1.08998 * 117.60480 * 244.71451 * 18 17 16 20 20 C 1.53002 * 118.12869 * 87.22419 * 18 17 16 21 21 C 1.52997 * 60.54714 * 268.33082 * 20 18 17 22 22 H 1.08998 * 119.52797 * 248.25949 * 21 20 18 23 23 C 1.48555 * 111.00018 * 54.58104 * 16 15 14 24 24 H 1.09001 * 109.47028 * 89.99934 * 1 2 3 25 25 H 1.08994 * 109.47418 * 210.00318 * 1 2 3 26 26 H 1.09004 * 109.47077 * 329.99935 * 1 2 3 27 27 H 1.09005 * 109.46943 * 149.99895 * 3 2 1 28 28 H 1.09002 * 109.47064 * 30.00158 * 3 2 1 29 29 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 30 30 H 1.09007 * 109.47181 * 300.00114 * 14 12 2 31 31 H 1.08999 * 109.46904 * 60.00271 * 14 12 2 32 32 H 1.08999 * 109.46844 * 300.00457 * 15 14 12 33 33 H 1.09005 * 109.47270 * 59.99400 * 15 14 12 34 34 H 1.09003 * 110.41113 * 319.73631 * 17 16 15 35 35 H 1.08998 * 110.41380 * 82.17654 * 17 16 15 36 36 H 1.09000 * 117.44699 * 15.98240 * 20 18 17 37 37 H 1.09008 * 117.44438 * 160.68921 * 20 18 17 38 38 H 1.09007 * 110.40857 * 277.81894 * 23 16 15 39 39 H 1.08995 * 110.41285 * 40.26384 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1270 2.8775 -1.6727 7 7 3.3458 3.2573 -2.9127 8 14 3.7351 3.9280 -0.2529 9 1 2.6841 4.9071 0.1241 10 1 4.0414 3.0579 0.9109 11 1 4.9632 4.6541 -0.6650 12 6 2.1388 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0001 14 6 1.3854 -2.4723 -0.0005 15 6 2.3795 -3.6352 -0.0005 16 7 1.6450 -4.9074 -0.0011 17 6 2.5618 -6.0513 -0.2419 18 6 1.6440 -7.1861 -0.7451 19 1 1.5517 -8.0751 -0.1213 20 6 1.3469 -7.2625 -2.2441 21 6 0.4080 -6.4723 -1.3304 22 1 -0.6035 -6.8381 -1.1539 23 6 0.6831 -4.9662 -1.1317 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 3.1499 1.1384 0.5139 28 1 1.6084 2.0284 0.5139 29 1 3.8227 4.0832 -3.0899 30 1 0.7590 -2.5302 0.8897 31 1 0.7584 -2.5298 -0.8903 32 1 3.0062 -3.5774 -0.8905 33 1 3.0063 -3.5775 0.8894 34 1 3.2995 -5.7938 -1.0020 35 1 3.0556 -6.3443 0.6845 36 1 1.9924 -6.6942 -2.9137 37 1 0.9840 -8.2126 -2.6365 38 1 -0.2376 -4.4422 -0.8751 39 1 1.1268 -4.5389 -2.0309 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380379479.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:28:36 Heat of formation + Delta-G solvation = 7.075142 kcal Electronic energy + Delta-G solvation = -18596.882800 eV Core-core repulsion = 15733.742202 eV Total energy + Delta-G solvation = -2863.140597 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.12177 -38.97017 -35.21889 -34.70913 -32.55684 -30.69501 -28.59778 -28.30033 -26.03955 -25.09204 -22.61551 -21.43263 -20.76585 -20.20354 -18.28447 -16.98099 -16.87320 -16.19635 -15.55823 -15.33610 -14.73565 -14.32633 -14.16377 -13.70269 -13.25429 -12.99160 -12.78306 -12.60013 -12.29925 -12.13910 -12.01229 -11.71616 -11.58043 -11.32087 -11.15243 -10.94773 -10.83951 -10.49002 -10.33971 -10.18718 -10.10192 -9.54630 -9.00486 -8.58920 -8.52679 -7.69439 -6.08506 -4.07079 3.27169 3.34994 3.35833 3.38365 3.40185 3.67324 4.08291 4.30520 4.40200 4.50124 4.80735 4.89845 5.04525 5.10228 5.16611 5.24298 5.33018 5.37731 5.45495 5.50610 5.54407 5.71500 5.74265 5.78508 5.87618 5.92111 5.98180 6.05806 6.12656 6.15796 6.64894 6.70979 6.93208 6.98573 7.34328 7.61790 8.25059 8.47417 8.92848 8.99213 9.51876 11.05012 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.039407 B = 0.004156 C = 0.004128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.366510 B = 6736.362760 C = 6780.936395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.599 5.599 3 C 0.215 3.785 4 C -0.528 4.528 5 H 0.073 0.927 6 C 0.071 3.929 7 N -0.898 5.898 8 Si 0.876 3.124 9 H -0.275 1.275 10 H -0.264 1.264 11 H -0.284 1.284 12 C 0.508 3.492 13 O -0.544 6.544 14 C -0.137 4.137 15 C 0.060 3.940 16 N -0.512 5.512 17 C 0.060 3.940 18 C -0.166 4.166 19 H 0.116 0.884 20 C -0.152 4.152 21 C -0.164 4.164 22 H 0.116 0.884 23 C 0.056 3.944 24 H 0.052 0.948 25 H 0.059 0.941 26 H 0.067 0.933 27 H 0.041 0.959 28 H 0.025 0.975 29 H 0.264 0.736 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.046 0.954 33 H 0.086 0.914 34 H 0.048 0.952 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.088 0.912 39 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.859 -18.045 5.481 20.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.331 5.331 3 C 0.094 3.906 4 C -0.567 4.567 5 H 0.091 0.909 6 C -0.131 4.131 7 N -0.537 5.537 8 Si 0.703 3.297 9 H -0.201 1.201 10 H -0.188 1.188 11 H -0.209 1.209 12 C 0.294 3.706 13 O -0.421 6.421 14 C -0.177 4.177 15 C -0.068 4.068 16 N -0.236 5.236 17 C -0.068 4.068 18 C -0.184 4.184 19 H 0.134 0.866 20 C -0.189 4.189 21 C -0.183 4.183 22 H 0.134 0.866 23 C -0.072 4.072 24 H 0.071 0.929 25 H 0.078 0.922 26 H 0.086 0.914 27 H 0.059 0.941 28 H 0.043 0.957 29 H 0.074 0.926 30 H 0.113 0.887 31 H 0.106 0.894 32 H 0.065 0.935 33 H 0.104 0.896 34 H 0.066 0.934 35 H 0.104 0.896 36 H 0.110 0.890 37 H 0.119 0.881 38 H 0.106 0.894 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.390 -17.873 5.922 20.226 hybrid contribution 0.577 0.823 -0.272 1.041 sum -6.813 -17.049 5.650 19.210 Atomic orbital electron populations 1.21656 0.80933 1.01776 1.01521 1.47834 1.06292 1.07184 1.71774 1.19681 0.92561 0.80000 0.98331 1.21334 1.36875 1.07175 0.91306 0.90875 1.24869 0.95230 0.97373 0.95614 1.69901 1.41584 1.23523 1.18683 0.86846 0.78899 0.80749 0.83255 1.20092 1.18816 1.20924 1.20289 0.88040 0.85104 0.77159 1.90668 1.13994 1.87329 1.50154 1.21677 0.99294 0.92624 1.04102 1.22008 0.95018 0.87004 1.02753 1.65627 1.14155 1.02662 1.41170 1.22633 0.93930 0.89699 1.00522 1.23398 0.98988 1.00152 0.95899 0.86605 1.23108 1.01913 1.01594 0.92276 1.23416 0.95746 0.93710 1.05447 0.86574 1.22679 0.97624 0.93925 0.92954 0.92901 0.92206 0.91426 0.94118 0.95693 0.92573 0.88705 0.89441 0.93531 0.89608 0.93378 0.89566 0.88999 0.88056 0.89405 0.93305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.31 10.28 59.85 0.62 1.92 16 2 N -0.60 -12.48 2.86 -182.95 -0.52 -13.00 16 3 C 0.21 5.34 4.27 -5.19 -0.02 5.32 16 4 C -0.53 -15.43 9.94 -34.44 -0.34 -15.78 16 5 H 0.07 2.34 8.06 -52.49 -0.42 1.92 16 6 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 7 N -0.90 -28.00 13.96 55.43 0.77 -27.22 16 8 Si 0.88 21.75 27.47 -169.99 -4.67 17.08 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 10 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 11 H -0.28 -7.01 7.11 56.52 0.40 -6.60 16 12 C 0.51 10.41 7.67 -10.99 -0.08 10.33 16 13 O -0.54 -13.49 15.56 5.55 0.09 -13.40 16 14 C -0.14 -2.01 3.97 -27.89 -0.11 -2.12 16 15 C 0.06 0.88 4.35 -3.83 -0.02 0.86 16 16 N -0.51 -6.31 5.49 -229.98 -1.26 -7.58 16 17 C 0.06 0.65 6.30 -2.18 -0.01 0.64 16 18 C -0.17 -1.54 7.13 -89.24 -0.64 -2.17 16 19 H 0.12 0.94 8.14 -51.93 -0.42 0.51 16 20 C -0.15 -1.29 10.07 -26.73 -0.27 -1.56 16 21 C -0.16 -1.54 7.13 -89.23 -0.64 -2.18 16 22 H 0.12 0.95 8.14 -51.93 -0.42 0.53 16 23 C 0.06 0.61 4.91 -2.18 -0.01 0.60 16 24 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.06 0.70 6.44 -51.93 -0.33 0.37 16 26 H 0.07 0.97 7.89 -51.93 -0.41 0.56 16 27 H 0.04 1.09 6.48 -51.93 -0.34 0.76 16 28 H 0.03 0.58 7.32 -51.93 -0.38 0.20 16 29 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 30 H 0.09 1.21 7.40 -51.93 -0.38 0.82 16 31 H 0.09 1.18 6.80 -51.93 -0.35 0.83 16 32 H 0.05 0.75 7.84 -51.93 -0.41 0.35 16 33 H 0.09 1.31 8.10 -51.93 -0.42 0.89 16 34 H 0.05 0.55 7.82 -51.93 -0.41 0.15 16 35 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.10 0.69 8.14 -51.92 -0.42 0.27 16 38 H 0.09 0.89 7.67 -51.92 -0.40 0.50 16 39 H 0.05 0.58 8.00 -51.93 -0.42 0.17 16 LS Contribution 314.54 15.07 4.74 4.74 Total: -1.00 -34.03 314.54 -8.85 -42.88 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -6.37 Total: -1.36 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -1.62 Total: -2.13 kcal Atomic # 7 Polarization: -46.79 SS G_CDS: -1.01 Total: -47.80 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: 0.09 Total: -13.40 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -34.03 -8.85 -42.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380379479.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.957 kcal (2) G-P(sol) polarization free energy of solvation -34.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds