Wall clock time and date at job start Sun Mar 29 2020 23:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46763 * 124.34785 * 2 1 4 4 C 1.54481 * 105.47201 * 162.98634 * 3 2 1 5 5 C 1.54626 * 101.76600 * 25.41502 * 4 3 2 6 6 H 1.09004 * 110.48298 * 216.39295 * 5 4 3 7 7 N 1.46895 * 110.48760 * 93.88394 * 5 4 3 8 8 C 1.46850 * 111.00228 * 66.64814 * 7 5 4 9 9 C 1.53034 * 109.51298 * 185.84691 * 8 7 5 10 10 C 1.53116 * 109.27960 * 300.80320 * 9 8 7 11 11 C 1.53119 * 109.15084 * 57.67485 * 10 9 8 12 12 H 1.09002 * 109.53428 * 62.30201 * 11 10 9 13 13 C 1.50695 * 109.50249 * 182.39580 * 11 10 9 14 14 H 1.08004 * 119.99844 * 119.80217 * 13 11 10 15 15 C 1.37875 * 120.00514 * 299.80270 * 13 11 10 16 16 N 1.31515 * 119.99685 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 120.00401 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.46934 * 60.00126 * 17 15 13 19 19 H 1.48500 * 109.47178 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.46817 * 299.99923 * 17 15 13 21 21 C 1.46846 * 111.00140 * 190.86093 * 7 5 4 22 22 C 1.34417 * 124.35171 * 180.02562 * 2 1 3 23 23 O 1.21281 * 124.93882 * 0.45069 * 22 2 1 24 24 H 1.09000 * 109.47466 * 90.00089 * 1 2 3 25 25 H 1.08999 * 109.47217 * 209.99834 * 1 2 3 26 26 H 1.09006 * 109.47515 * 329.99791 * 1 2 3 27 27 H 1.08996 * 110.24643 * 43.98404 * 3 2 1 28 28 H 1.08998 * 110.25009 * 281.98377 * 3 2 1 29 29 H 1.08999 * 110.96691 * 267.29661 * 4 3 2 30 30 H 1.09002 * 111.00137 * 143.55418 * 4 3 2 31 31 H 1.09005 * 109.46117 * 305.86068 * 8 7 5 32 32 H 1.08996 * 109.46005 * 65.83774 * 8 7 5 33 33 H 1.09001 * 109.50613 * 60.75985 * 9 8 7 34 34 H 1.09006 * 109.49946 * 180.87515 * 9 8 7 35 35 H 1.09000 * 109.52867 * 297.76829 * 10 9 8 36 36 H 1.08995 * 109.51871 * 177.57307 * 10 9 8 37 37 H 0.97002 * 120.00447 * 180.02562 * 16 15 13 38 38 H 1.08999 * 109.46210 * 294.17304 * 21 7 5 39 39 H 1.09001 * 109.46178 * 54.15440 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2930 1.2117 0.0000 4 6 3.7010 0.7487 0.4356 5 6 3.6898 -0.7378 0.0100 6 1 4.2346 -1.3455 0.7325 7 7 4.2688 -0.8930 -1.3310 8 6 5.7007 -0.5671 -1.3270 9 6 6.2360 -0.5980 -2.7603 10 6 6.0127 -1.9919 -3.3534 11 6 4.5194 -2.3265 -3.3015 12 1 3.9647 -1.6138 -3.9118 13 6 4.2976 -3.7205 -3.8293 14 1 3.8543 -4.4739 -3.1949 15 6 4.6604 -4.0342 -5.1219 16 7 5.2007 -3.1169 -5.8941 17 14 4.3861 -5.7623 -5.7758 18 1 2.9384 -6.0885 -5.7205 19 1 4.8582 -5.8404 -7.1816 20 1 5.1442 -6.7321 -4.9450 21 6 4.0335 -2.2454 -1.8525 22 6 2.2234 -1.1097 -0.0005 23 8 1.7946 -2.2442 -0.0088 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5139 27 1 1.8983 1.9383 0.7102 28 1 2.3306 1.6430 -1.0003 29 1 3.8268 0.8448 1.5141 30 1 4.4758 1.3010 -0.0962 31 1 5.8454 0.4282 -0.9066 32 1 6.2378 -1.2982 -0.7228 33 1 5.7086 0.1424 -3.3619 34 1 7.3022 -0.3713 -2.7555 35 1 6.5713 -2.7277 -2.7750 36 1 6.3533 -2.0060 -4.3887 37 1 5.4557 -3.3374 -6.8037 38 1 4.5785 -2.9685 -1.2457 39 1 2.9674 -2.4691 -1.8141 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397600235.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:13:46 Heat of formation + Delta-G solvation = -28.314561 kcal Electronic energy + Delta-G solvation = -19656.629566 eV Core-core repulsion = 16791.954356 eV Total energy + Delta-G solvation = -2864.675210 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.47902 -37.68944 -36.20175 -33.90223 -32.22842 -30.53568 -29.73965 -27.01863 -26.17137 -24.88401 -22.79226 -21.88897 -20.54259 -19.18531 -18.62555 -16.88086 -16.50920 -16.00383 -15.35224 -14.80156 -14.45179 -14.09207 -13.69772 -13.41045 -13.15294 -12.80547 -12.72253 -12.56527 -12.30975 -12.19042 -12.10793 -11.51724 -11.32195 -11.17517 -10.86677 -10.68516 -10.59148 -10.07147 -9.81463 -9.55656 -9.35913 -8.99424 -8.64630 -8.54646 -8.24329 -7.75619 -5.91202 -3.96169 2.74310 3.14527 3.38336 3.41594 3.45945 4.38138 4.44289 4.54353 4.61473 4.95276 5.21556 5.26732 5.38804 5.45643 5.46702 5.59672 5.67645 5.73055 5.80635 5.84391 5.93558 6.10009 6.26741 6.47767 6.57764 6.65658 6.71260 6.78526 7.05010 7.21064 7.23671 7.39769 7.60713 7.75909 7.83726 8.13983 8.22445 8.39886 8.55851 9.07579 9.67622 11.15067 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.025623 B = 0.006593 C = 0.005664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.487810 B = 4245.762570 C = 4941.893836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.622 5.622 3 C 0.113 3.887 4 C -0.129 4.129 5 C 0.048 3.952 6 H 0.068 0.932 7 N -0.519 5.519 8 C 0.062 3.938 9 C -0.116 4.116 10 C -0.112 4.112 11 C 0.058 3.942 12 H 0.032 0.968 13 C -0.512 4.512 14 H 0.053 0.947 15 C 0.063 3.937 16 N -0.891 5.891 17 Si 0.890 3.110 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.278 1.278 21 C 0.060 3.940 22 C 0.531 3.469 23 O -0.523 6.523 24 H 0.056 0.944 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.062 0.938 32 H 0.026 0.974 33 H 0.061 0.939 34 H 0.048 0.952 35 H 0.030 0.970 36 H 0.091 0.909 37 H 0.259 0.741 38 H 0.021 0.979 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.888 11.447 12.112 16.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.358 5.358 3 C -0.010 4.010 4 C -0.167 4.167 5 C -0.064 4.064 6 H 0.086 0.914 7 N -0.246 5.246 8 C -0.066 4.066 9 C -0.153 4.153 10 C -0.150 4.150 11 C 0.039 3.961 12 H 0.050 0.950 13 C -0.550 4.550 14 H 0.072 0.928 15 C -0.138 4.138 16 N -0.530 5.530 17 Si 0.718 3.282 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.204 1.204 21 C -0.066 4.066 22 C 0.318 3.682 23 O -0.398 6.398 24 H 0.075 0.925 25 H 0.091 0.909 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.116 0.884 31 H 0.080 0.920 32 H 0.044 0.956 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.049 0.951 36 H 0.110 0.890 37 H 0.069 0.931 38 H 0.040 0.960 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.383 11.184 11.619 16.478 hybrid contribution 0.245 -1.451 0.139 1.478 sum -3.138 9.733 11.757 15.583 Atomic orbital electron populations 1.21493 0.78376 1.02540 1.01975 1.48062 1.06237 1.07531 1.73937 1.21993 0.90223 0.86876 1.01925 1.22722 0.97314 0.95439 1.01237 1.22320 0.93364 0.96863 0.93836 0.91388 1.62126 1.14496 1.30399 1.17560 1.22118 0.87030 0.98923 0.98510 1.21667 0.98256 1.01026 0.94398 1.21675 0.99630 0.91538 1.02174 1.18644 0.92133 0.96569 0.88770 0.94959 1.21134 1.40270 0.96158 0.97484 0.92830 1.24916 0.95168 0.96934 0.96796 1.69881 1.42401 1.32955 1.07776 0.86685 0.78624 0.85114 0.77746 1.20295 1.21336 1.20358 1.22500 1.01174 0.84463 0.98480 1.20651 0.88797 0.84217 0.74563 1.90722 1.78543 1.21143 1.49389 0.92546 0.90923 0.91386 0.90993 0.90633 0.90266 0.88403 0.91967 0.95564 0.92037 0.93311 0.95088 0.89048 0.93090 0.96040 0.90947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.10 10.96 59.84 0.66 1.76 16 2 N -0.62 -8.65 3.33 -180.29 -0.60 -9.25 16 3 C 0.11 1.20 7.35 -3.12 -0.02 1.17 16 4 C -0.13 -1.40 6.65 -25.10 -0.17 -1.57 16 5 C 0.05 0.76 2.66 -67.73 -0.18 0.58 16 6 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 7 N -0.52 -9.73 4.53 -226.71 -1.03 -10.76 16 8 C 0.06 1.04 5.31 -3.83 -0.02 1.02 16 9 C -0.12 -2.21 6.09 -26.65 -0.16 -2.37 16 10 C -0.11 -2.69 5.03 -26.61 -0.13 -2.82 16 11 C 0.06 1.51 2.26 -91.69 -0.21 1.30 16 12 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 13 C -0.51 -14.77 8.56 -34.44 -0.29 -15.07 16 14 H 0.05 1.56 7.74 -52.48 -0.41 1.15 16 15 C 0.06 1.79 5.30 -17.82 -0.09 1.70 16 16 N -0.89 -25.98 11.36 55.43 0.63 -25.35 16 17 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 C 0.06 1.40 4.33 -3.83 -0.02 1.38 16 22 C 0.53 9.42 6.69 -10.86 -0.07 9.35 16 23 O -0.52 -11.39 15.94 5.56 0.09 -11.30 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.07 0.87 7.93 -51.93 -0.41 0.46 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.10 0.99 6.23 -51.93 -0.32 0.67 16 31 H 0.06 0.85 6.23 -51.93 -0.32 0.52 16 32 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.09 2.44 6.16 -51.93 -0.32 2.12 16 37 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 38 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 1.83 5.79 -51.93 -0.30 1.53 16 LS Contribution 303.32 15.07 4.57 4.57 Total: -1.00 -32.47 303.32 -8.37 -40.84 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -6.29 Total: -2.26 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: -0.72 Total: -3.56 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: -1.00 Total: -45.36 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.09 Total: -11.30 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.47 -8.37 -40.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397600235.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.521 kcal (2) G-P(sol) polarization free energy of solvation -32.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds