Wall clock time and date at job start Sun Mar 29 2020 23:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46766 * 124.34860 * 2 1 4 4 C 1.54485 * 105.46908 * 162.98128 * 3 2 1 5 5 C 1.54622 * 101.76815 * 25.41245 * 4 3 2 6 6 H 1.09007 * 110.48603 * 94.01134 * 5 4 3 7 7 N 1.46897 * 110.48890 * 216.52270 * 5 4 3 8 8 C 1.46843 * 110.99831 * 297.85761 * 7 5 4 9 9 C 1.53038 * 109.52242 * 185.83761 * 8 7 5 10 10 C 1.53123 * 109.31257 * 300.84031 * 9 8 7 11 11 C 1.53113 * 109.15478 * 57.59399 * 10 9 8 12 12 H 1.08995 * 109.50521 * 62.36880 * 11 10 9 13 13 C 1.50699 * 109.50142 * 182.44843 * 11 10 9 14 14 H 1.07998 * 120.00708 * 119.65063 * 13 11 10 15 15 C 1.37885 * 119.99934 * 299.91876 * 13 11 10 16 16 N 1.31511 * 119.99508 * 0.02562 * 15 13 11 17 17 Si 1.86797 * 120.00044 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47459 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47333 * 120.00449 * 17 15 13 20 20 H 1.48501 * 109.46873 * 239.99960 * 17 15 13 21 21 C 1.46840 * 110.99888 * 62.06590 * 7 5 4 22 22 C 1.34423 * 124.34783 * 179.97438 * 2 1 3 23 23 O 1.21275 * 124.94336 * 0.44302 * 22 2 1 24 24 H 1.08997 * 109.46595 * 90.00060 * 1 2 3 25 25 H 1.08993 * 109.47032 * 210.00280 * 1 2 3 26 26 H 1.09002 * 109.46996 * 330.00849 * 1 2 3 27 27 H 1.09003 * 110.24814 * 43.98183 * 3 2 1 28 28 H 1.08998 * 110.31759 * 282.01366 * 3 2 1 29 29 H 1.08999 * 110.96649 * 267.29133 * 4 3 2 30 30 H 1.09000 * 110.96422 * 143.53350 * 4 3 2 31 31 H 1.09004 * 109.46488 * 305.85014 * 8 7 5 32 32 H 1.08998 * 109.46487 * 65.82352 * 8 7 5 33 33 H 1.09003 * 109.50449 * 60.76416 * 9 8 7 34 34 H 1.09000 * 109.50479 * 180.83744 * 9 8 7 35 35 H 1.09002 * 109.48867 * 297.70827 * 10 9 8 36 36 H 1.09002 * 109.55781 * 177.51717 * 10 9 8 37 37 H 0.97001 * 119.99895 * 180.02562 * 16 15 13 38 38 H 1.09003 * 109.46485 * 54.14514 * 21 7 5 39 39 H 1.09004 * 109.46557 * 294.17685 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7010 0.7486 0.4358 5 6 3.6898 -0.7379 0.0103 6 1 4.1216 -0.8534 -0.9839 7 7 4.4213 -1.5574 0.9856 8 6 5.8320 -1.1560 1.0574 9 6 6.5924 -2.1206 1.9703 10 6 5.9642 -2.0977 3.3665 11 6 4.4834 -2.4714 3.2574 12 1 4.3917 -3.4861 2.8701 13 6 3.8431 -2.3929 4.6193 14 1 3.0215 -1.7134 4.7915 15 6 4.3097 -3.1848 5.6472 16 7 5.3138 -4.0081 5.4390 17 14 3.5155 -3.0881 7.3351 18 1 2.4139 -2.0926 7.3077 19 1 2.9699 -4.4194 7.7026 20 1 4.5311 -2.6758 8.3370 21 6 3.7841 -1.4966 2.3071 22 6 2.2235 -1.1098 0.0005 23 8 1.7946 -2.2442 -0.0067 24 1 -0.3632 0.0000 -1.0277 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8901 0.5137 27 1 1.8984 1.9384 0.7102 28 1 2.3310 1.6442 -0.9998 29 1 3.8268 0.8448 1.5142 30 1 4.4754 1.3010 -0.0966 31 1 6.2681 -1.1812 0.0587 32 1 5.9020 -0.1449 1.4586 33 1 6.5345 -3.1297 1.5623 34 1 7.6363 -1.8137 2.0352 35 1 6.0574 -1.0981 3.7909 36 1 6.4748 -2.8159 4.0081 37 1 5.6419 -4.5655 6.1620 38 1 2.7326 -1.7693 2.2163 39 1 3.8637 -0.4840 2.7026 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397600238.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:13:49 Heat of formation + Delta-G solvation = -26.747828 kcal Electronic energy + Delta-G solvation = -19742.201460 eV Core-core repulsion = 16877.594188 eV Total energy + Delta-G solvation = -2864.607271 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.58971 -37.74913 -36.11026 -33.95003 -32.25662 -30.31620 -29.84353 -27.10497 -26.02221 -24.92137 -23.11008 -21.67071 -20.99255 -19.10449 -18.40451 -16.78880 -16.49045 -16.11900 -15.36079 -14.75947 -14.20266 -14.08877 -13.95031 -13.68600 -13.18957 -12.83778 -12.70287 -12.56174 -12.31755 -12.25318 -11.97749 -11.62971 -11.47768 -11.10794 -10.92974 -10.64523 -10.61167 -10.07948 -9.82387 -9.46298 -9.43496 -9.03679 -8.65601 -8.63717 -8.26688 -7.65639 -5.93430 -3.99083 2.80637 3.09840 3.32347 3.40229 3.43857 4.23832 4.45541 4.50773 4.75845 4.94002 5.03360 5.24241 5.36470 5.37091 5.41966 5.56964 5.67970 5.70931 5.75351 5.82176 5.90022 6.08825 6.28502 6.38506 6.52924 6.60119 6.71686 6.77048 6.98491 7.17669 7.24200 7.40198 7.61047 7.75094 7.81048 8.14464 8.21647 8.44066 8.51913 9.04727 9.64686 11.12845 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.022759 B = 0.007016 C = 0.005962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.995550 B = 3990.045207 C = 4695.671226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.632 5.632 3 C 0.110 3.890 4 C -0.173 4.173 5 C 0.056 3.944 6 H 0.110 0.890 7 N -0.515 5.515 8 C 0.064 3.936 9 C -0.118 4.118 10 C -0.111 4.111 11 C 0.056 3.944 12 H 0.036 0.964 13 C -0.512 4.512 14 H 0.052 0.948 15 C 0.063 3.937 16 N -0.888 5.888 17 Si 0.889 3.111 18 H -0.275 1.275 19 H -0.284 1.284 20 H -0.285 1.285 21 C 0.065 3.935 22 C 0.525 3.475 23 O -0.507 6.507 24 H 0.052 0.948 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.059 0.941 32 H 0.028 0.972 33 H 0.062 0.938 34 H 0.048 0.952 35 H 0.029 0.971 36 H 0.092 0.908 37 H 0.259 0.741 38 H 0.060 0.940 39 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.746 12.025 -11.131 16.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.369 5.369 3 C -0.014 4.014 4 C -0.213 4.213 5 C -0.057 4.057 6 H 0.128 0.872 7 N -0.239 5.239 8 C -0.063 4.063 9 C -0.156 4.156 10 C -0.149 4.149 11 C 0.037 3.963 12 H 0.054 0.946 13 C -0.551 4.551 14 H 0.070 0.930 15 C -0.138 4.138 16 N -0.527 5.527 17 Si 0.718 3.282 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.211 1.211 21 C -0.061 4.061 22 C 0.312 3.688 23 O -0.380 6.380 24 H 0.070 0.930 25 H 0.094 0.906 26 H 0.087 0.913 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.109 0.891 30 H 0.106 0.894 31 H 0.078 0.922 32 H 0.046 0.954 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.048 0.952 36 H 0.110 0.890 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -2.974 10.760 -11.197 15.811 hybrid contribution -0.441 1.067 1.208 1.671 sum -3.415 11.827 -9.989 15.853 Atomic orbital electron populations 1.21486 0.78295 1.03126 1.01389 1.48148 1.06303 1.07466 1.74968 1.21973 0.90775 0.87373 1.01256 1.23356 0.96382 0.97758 1.03803 1.22457 0.92854 0.90903 0.99492 0.87201 1.62056 1.01831 1.50931 1.09064 1.22048 0.87965 0.97168 0.99137 1.21687 0.97033 0.99012 0.97851 1.21662 0.99299 1.00454 0.93451 1.18652 0.91074 0.94415 0.92172 0.94598 1.21160 1.16626 1.22415 0.94896 0.92961 1.24926 0.95030 0.95211 0.98668 1.69900 1.25726 1.24857 1.32202 0.86579 0.79305 0.77858 0.84495 1.19923 1.21009 1.21096 1.22404 0.98328 0.98763 0.86608 1.20670 0.88806 0.84290 0.75048 1.90724 1.78190 1.20925 1.48147 0.92964 0.90637 0.91312 0.90715 0.91380 0.89140 0.89391 0.92203 0.95403 0.91927 0.93305 0.95179 0.89007 0.93126 0.92169 0.96074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.11 10.96 59.85 0.66 1.76 16 2 N -0.63 -8.63 3.33 -180.28 -0.60 -9.23 16 3 C 0.11 1.13 7.35 -3.12 -0.02 1.10 16 4 C -0.17 -2.07 5.50 -25.10 -0.14 -2.21 16 5 C 0.06 0.86 3.13 -67.73 -0.21 0.65 16 6 H 0.11 1.50 8.14 -51.93 -0.42 1.08 16 7 N -0.52 -9.89 4.72 -226.71 -1.07 -10.96 16 8 C 0.06 1.10 5.11 -3.84 -0.02 1.08 16 9 C -0.12 -2.30 6.09 -26.65 -0.16 -2.46 16 10 C -0.11 -2.64 5.03 -26.61 -0.13 -2.77 16 11 C 0.06 1.45 2.26 -91.69 -0.21 1.24 16 12 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 13 C -0.51 -14.49 8.56 -34.44 -0.29 -14.78 16 14 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 15 C 0.06 1.78 5.30 -17.82 -0.09 1.68 16 16 N -0.89 -25.87 11.35 55.43 0.63 -25.24 16 17 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 18 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 21 C 0.07 1.46 4.05 -3.84 -0.02 1.44 16 22 C 0.53 9.25 5.96 -10.86 -0.06 9.19 16 23 O -0.51 -11.19 17.18 5.56 0.10 -11.09 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.07 0.97 7.93 -51.93 -0.41 0.56 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.09 1.26 5.86 -51.93 -0.30 0.95 16 30 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.87 8.12 -51.93 -0.42 0.45 16 32 H 0.03 0.45 7.31 -51.93 -0.38 0.07 16 33 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.09 2.45 6.15 -51.93 -0.32 2.13 16 37 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 38 H 0.06 1.46 6.43 -51.93 -0.33 1.13 16 39 H 0.02 0.46 6.31 -51.93 -0.33 0.13 16 LS Contribution 302.35 15.07 4.56 4.56 Total: -1.00 -32.54 302.35 -8.39 -40.93 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -6.27 Total: -1.59 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: -0.71 Total: -4.07 kcal Atomic # 7 Polarization: -44.38 SS G_CDS: -1.04 Total: -45.42 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.10 Total: -11.09 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.54 -8.39 -40.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397600238.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.179 kcal (2) G-P(sol) polarization free energy of solvation -32.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds