Wall clock time and date at job start Sun Mar 29 2020 23:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46766 * 124.34860 * 2 1 4 4 C 1.54485 * 105.46908 * 162.98128 * 3 2 1 5 5 C 1.54622 * 101.76815 * 25.41245 * 4 3 2 6 6 H 1.09007 * 110.48603 * 94.01134 * 5 4 3 7 7 N 1.46897 * 110.48890 * 216.52270 * 5 4 3 8 8 C 1.46843 * 110.99831 * 297.85761 * 7 5 4 9 9 C 1.53038 * 109.52242 * 185.83761 * 8 7 5 10 10 C 1.53123 * 109.31257 * 300.84031 * 9 8 7 11 11 C 1.53113 * 109.15478 * 57.59399 * 10 9 8 12 12 H 1.08995 * 109.50521 * 62.36880 * 11 10 9 13 13 C 1.50699 * 109.50142 * 182.44843 * 11 10 9 14 14 H 1.07998 * 120.00708 * 119.65063 * 13 11 10 15 15 C 1.37885 * 119.99934 * 299.91876 * 13 11 10 16 16 N 1.31511 * 119.99508 * 0.02562 * 15 13 11 17 17 Si 1.86797 * 120.00044 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47459 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47333 * 120.00449 * 17 15 13 20 20 H 1.48501 * 109.46873 * 239.99960 * 17 15 13 21 21 C 1.46840 * 110.99888 * 62.06590 * 7 5 4 22 22 C 1.34423 * 124.34783 * 179.97438 * 2 1 3 23 23 O 1.21275 * 124.94336 * 0.44302 * 22 2 1 24 24 H 1.08997 * 109.46595 * 90.00060 * 1 2 3 25 25 H 1.08993 * 109.47032 * 210.00280 * 1 2 3 26 26 H 1.09002 * 109.46996 * 330.00849 * 1 2 3 27 27 H 1.09003 * 110.24814 * 43.98183 * 3 2 1 28 28 H 1.08998 * 110.31759 * 282.01366 * 3 2 1 29 29 H 1.08999 * 110.96649 * 267.29133 * 4 3 2 30 30 H 1.09000 * 110.96422 * 143.53350 * 4 3 2 31 31 H 1.09004 * 109.46488 * 305.85014 * 8 7 5 32 32 H 1.08998 * 109.46487 * 65.82352 * 8 7 5 33 33 H 1.09003 * 109.50449 * 60.76416 * 9 8 7 34 34 H 1.09000 * 109.50479 * 180.83744 * 9 8 7 35 35 H 1.09002 * 109.48867 * 297.70827 * 10 9 8 36 36 H 1.09002 * 109.55781 * 177.51717 * 10 9 8 37 37 H 0.97001 * 119.99895 * 180.02562 * 16 15 13 38 38 H 1.09003 * 109.46485 * 54.14514 * 21 7 5 39 39 H 1.09004 * 109.46557 * 294.17685 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7010 0.7486 0.4358 5 6 3.6898 -0.7379 0.0103 6 1 4.1216 -0.8534 -0.9839 7 7 4.4213 -1.5574 0.9856 8 6 5.8320 -1.1560 1.0574 9 6 6.5924 -2.1206 1.9703 10 6 5.9642 -2.0977 3.3665 11 6 4.4834 -2.4714 3.2574 12 1 4.3917 -3.4861 2.8701 13 6 3.8431 -2.3929 4.6193 14 1 3.0215 -1.7134 4.7915 15 6 4.3097 -3.1848 5.6472 16 7 5.3138 -4.0081 5.4390 17 14 3.5155 -3.0881 7.3351 18 1 2.4139 -2.0926 7.3077 19 1 2.9699 -4.4194 7.7026 20 1 4.5311 -2.6758 8.3370 21 6 3.7841 -1.4966 2.3071 22 6 2.2235 -1.1098 0.0005 23 8 1.7946 -2.2442 -0.0067 24 1 -0.3632 0.0000 -1.0277 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8901 0.5137 27 1 1.8984 1.9384 0.7102 28 1 2.3310 1.6442 -0.9998 29 1 3.8268 0.8448 1.5142 30 1 4.4754 1.3010 -0.0966 31 1 6.2681 -1.1812 0.0587 32 1 5.9020 -0.1449 1.4586 33 1 6.5345 -3.1297 1.5623 34 1 7.6363 -1.8137 2.0352 35 1 6.0574 -1.0981 3.7909 36 1 6.4748 -2.8159 4.0081 37 1 5.6419 -4.5655 6.1620 38 1 2.7326 -1.7693 2.2163 39 1 3.8637 -0.4840 2.7026 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397600238.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:13:49 Heat of formation + Delta-G solvation = -50.319493 kcal Electronic energy + Delta-G solvation = -19743.223604 eV Core-core repulsion = 16877.594188 eV Total energy + Delta-G solvation = -2865.629416 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.82516 -39.31091 -37.40835 -35.68542 -33.93224 -31.71901 -31.58974 -28.22788 -27.23568 -26.87249 -24.49660 -23.28710 -22.44511 -20.36006 -20.06881 -18.55945 -17.69767 -17.58566 -16.78598 -16.52052 -15.72637 -15.44029 -15.36137 -14.88632 -14.65478 -14.45179 -14.30765 -13.87281 -13.69702 -13.47871 -13.22116 -13.07977 -12.88270 -12.68525 -12.61257 -12.51144 -12.09736 -11.82020 -11.67049 -11.39036 -10.93496 -10.86040 -10.60020 -10.40398 -9.70057 -9.08637 -8.10726 -6.25554 1.36931 1.38550 1.50008 1.51725 2.08333 2.40036 3.00096 3.15713 3.38127 3.72165 3.96049 4.06188 4.22922 4.26361 4.32906 4.39046 4.48514 4.57689 4.67287 4.68871 4.75820 4.82771 4.85138 4.94868 4.97464 5.09155 5.12526 5.22029 5.39977 5.49368 5.59665 5.61320 5.91542 6.04577 6.11541 6.19179 6.31816 6.41813 6.86671 7.19610 7.42122 8.94400 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.022759 B = 0.007016 C = 0.005962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.995550 B = 3990.045207 C = 4695.671226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.629 5.629 3 C 0.108 3.892 4 C -0.162 4.162 5 C 0.052 3.948 6 H 0.135 0.865 7 N -0.540 5.540 8 C 0.069 3.931 9 C -0.113 4.113 10 C -0.102 4.102 11 C 0.052 3.948 12 H -0.017 1.017 13 C -0.538 4.538 14 H 0.046 0.954 15 C 0.013 3.987 16 N -0.915 5.915 17 Si 0.956 3.044 18 H -0.268 1.268 19 H -0.282 1.282 20 H -0.273 1.273 21 C 0.091 3.909 22 C 0.508 3.492 23 O -0.572 6.572 24 H 0.071 0.929 25 H 0.046 0.954 26 H 0.101 0.899 27 H 0.095 0.905 28 H 0.105 0.895 29 H 0.069 0.931 30 H 0.128 0.872 31 H 0.097 0.903 32 H 0.047 0.953 33 H 0.042 0.958 34 H 0.079 0.921 35 H 0.031 0.969 36 H 0.056 0.944 37 H 0.261 0.739 38 H 0.028 0.972 39 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.381 15.281 -12.147 19.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.363 5.363 3 C -0.014 4.014 4 C -0.201 4.201 5 C -0.060 4.060 6 H 0.153 0.847 7 N -0.264 5.264 8 C -0.058 4.058 9 C -0.151 4.151 10 C -0.140 4.140 11 C 0.033 3.967 12 H 0.001 0.999 13 C -0.576 4.576 14 H 0.065 0.935 15 C -0.185 4.185 16 N -0.554 5.554 17 Si 0.781 3.219 18 H -0.193 1.193 19 H -0.208 1.208 20 H -0.199 1.199 21 C -0.036 4.036 22 C 0.295 3.705 23 O -0.450 6.450 24 H 0.090 0.910 25 H 0.065 0.935 26 H 0.119 0.881 27 H 0.113 0.887 28 H 0.123 0.877 29 H 0.088 0.912 30 H 0.146 0.854 31 H 0.115 0.885 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.098 0.902 35 H 0.050 0.950 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.047 0.953 39 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -2.612 14.087 -12.227 18.835 hybrid contribution -0.589 0.051 1.484 1.597 sum -3.201 14.138 -10.744 18.043 Atomic orbital electron populations 1.21673 0.77149 1.03307 1.02740 1.48372 1.07410 1.07704 1.72838 1.22302 0.89063 0.86055 1.03973 1.23337 0.98810 0.95044 1.02944 1.22597 0.91132 0.92756 0.99482 0.84737 1.61866 1.03215 1.53623 1.07713 1.22081 0.86227 0.96918 1.00539 1.21621 0.98925 0.99163 0.95410 1.21435 0.97565 0.99101 0.95878 1.18574 0.93250 0.92699 0.92131 0.99906 1.21507 1.16875 1.22795 0.96445 0.93523 1.25747 0.95507 0.94742 1.02532 1.70050 1.26711 1.25293 1.33368 0.85543 0.78655 0.77895 0.79796 1.19267 1.20790 1.19861 1.21866 0.96181 0.97644 0.87952 1.21230 0.90391 0.84279 0.74591 1.90679 1.79389 1.23548 1.51414 0.91030 0.93480 0.88084 0.88654 0.87693 0.91196 0.85425 0.88453 0.93479 0.93882 0.90234 0.95041 0.92511 0.92965 0.95318 0.95228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.93 10.96 127.77 1.40 3.33 16 2 N -0.63 -15.96 3.33 -842.88 -2.81 -18.77 16 3 C 0.11 1.73 7.35 86.83 0.64 2.37 16 4 C -0.16 -3.20 5.50 31.65 0.17 -3.02 16 5 C 0.05 1.50 3.13 44.91 0.14 1.64 16 6 H 0.14 3.21 8.14 -2.38 -0.02 3.19 16 7 N -0.54 -20.40 4.72 -871.18 -4.11 -24.51 16 8 C 0.07 2.17 5.11 86.33 0.44 2.61 16 9 C -0.11 -4.33 6.09 30.65 0.19 -4.15 16 10 C -0.10 -4.97 5.03 30.67 0.15 -4.81 16 11 C 0.05 2.86 2.26 -11.49 -0.03 2.83 16 12 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 13 C -0.54 -31.66 8.56 25.60 0.22 -31.44 16 14 H 0.05 2.71 7.74 -2.91 -0.02 2.69 16 15 C 0.01 0.78 5.30 84.66 0.45 1.23 16 16 N -0.91 -55.29 11.35 21.45 0.24 -55.04 16 17 Si 0.96 45.39 29.54 68.60 2.03 47.41 16 18 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 19 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 20 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 21 C 0.09 4.17 4.05 86.33 0.35 4.52 16 22 C 0.51 17.81 5.96 87.90 0.52 18.33 16 23 O -0.57 -26.53 17.18 -3.02 -0.05 -26.58 16 24 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.05 1.25 7.93 -2.39 -0.02 1.23 16 26 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.07 1.71 5.86 -2.39 -0.01 1.70 16 30 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.10 2.39 8.12 -2.39 -0.02 2.37 16 32 H 0.05 1.32 7.31 -2.39 -0.02 1.31 16 33 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 35 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.06 3.16 6.15 -2.39 -0.01 3.14 16 37 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 38 H 0.03 1.46 6.43 -2.39 -0.02 1.45 16 39 H 0.03 1.28 6.31 -2.39 -0.02 1.27 16 Total: -1.00 -77.43 302.35 0.97 -76.46 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: 1.02 Total: 7.58 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: 4.65 Total: -6.55 kcal Atomic # 7 Polarization: -91.65 SS G_CDS: -6.67 Total: -98.32 kcal Atomic # 8 Polarization: -26.53 SS G_CDS: -0.05 Total: -26.58 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.41 kcal Total: -77.43 0.97 -76.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397600238.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.139 kcal (2) G-P(sol) polarization free energy of solvation -77.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds