Wall clock time and date at job start Sun Mar 29 2020 23:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47839 * 110.99973 * 2 1 4 4 C 1.54910 * 104.79735 * 146.36376 * 3 2 1 5 5 C 1.55139 * 101.65258 * 322.92613 * 4 3 2 6 6 H 1.08995 * 110.85759 * 277.20180 * 5 4 3 7 7 C 1.50703 * 110.70519 * 154.03207 * 5 4 3 8 8 O 1.21276 * 120.00022 * 4.95342 * 7 5 4 9 9 N 1.34772 * 119.99873 * 184.94529 * 7 5 4 10 10 C 1.46501 * 120.00001 * 180.02562 * 9 7 5 11 11 C 1.53004 * 109.47297 * 184.79611 * 10 9 7 12 12 C 1.50705 * 115.54907 * 294.82615 * 11 10 9 13 13 H 1.07993 * 120.00157 * 95.15406 * 12 11 10 14 14 C 1.37878 * 119.99328 * 275.15151 * 12 11 10 15 15 N 1.31506 * 120.00610 * 5.24365 * 14 12 11 16 16 Si 1.86806 * 119.99441 * 185.24680 * 14 12 11 17 17 H 1.48499 * 109.47050 * 269.99703 * 16 14 12 18 18 H 1.48499 * 109.47352 * 29.99721 * 16 14 12 19 19 H 1.48499 * 109.47067 * 150.00195 * 16 14 12 20 20 C 1.53000 * 117.50019 * 80.49060 * 11 10 9 21 21 C 1.52998 * 117.50032 * 149.15509 * 11 10 9 22 22 C 1.47451 * 110.99810 * 120.83925 * 2 1 3 23 23 H 1.09004 * 109.47095 * 299.16128 * 1 2 3 24 24 H 1.09000 * 109.46896 * 59.15682 * 1 2 3 25 25 H 1.08998 * 109.47262 * 179.16311 * 1 2 3 26 26 H 1.09006 * 110.37583 * 265.18941 * 3 2 1 27 27 H 1.09000 * 110.37595 * 27.42133 * 3 2 1 28 28 H 1.08997 * 110.99017 * 204.83325 * 4 3 2 29 29 H 1.09005 * 110.99047 * 81.01866 * 4 3 2 30 30 H 0.97005 * 120.00158 * 0.02562 * 9 7 5 31 31 H 1.08996 * 109.47519 * 64.79508 * 10 9 7 32 32 H 1.08998 * 109.47207 * 304.79240 * 10 9 7 33 33 H 0.97002 * 120.00495 * 174.99876 * 15 14 12 34 34 H 1.08997 * 117.50104 * 215.00270 * 20 11 10 35 35 H 1.09004 * 117.49573 * 0.03061 * 20 11 10 36 36 H 1.08997 * 117.49661 * 359.97101 * 21 11 10 37 37 H 1.08999 * 117.50122 * 144.97607 * 21 11 10 38 38 H 1.09004 * 109.88583 * 117.33689 * 22 2 1 39 39 H 1.08993 * 110.02431 * 356.22822 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3802 0.0000 4 6 3.3047 1.3027 0.8296 5 6 2.9158 0.2822 1.9315 6 1 2.3752 0.7725 2.7411 7 6 4.1383 -0.4231 2.4600 8 8 5.2413 -0.0918 2.0799 9 7 4.0058 -1.4218 3.3551 10 6 5.1942 -2.1071 3.8693 11 6 4.7645 -3.2674 4.7693 12 6 4.0459 -2.8766 6.0350 13 1 2.9664 -2.8636 6.0610 14 6 4.7669 -2.5355 7.1597 15 7 6.0778 -2.4511 7.1000 16 14 3.8812 -2.1936 8.7686 17 1 3.5437 -0.7498 8.8506 18 1 2.6342 -2.9976 8.8278 19 1 4.7619 -2.5614 9.9063 20 6 4.3382 -4.5694 4.0882 21 6 5.6777 -4.4937 4.8253 22 6 1.9974 -0.7057 1.1820 23 1 -0.3633 0.5008 0.8974 24 1 -0.3633 0.5269 -0.8823 25 1 -0.3634 -1.0275 -0.0150 26 1 2.2148 1.7038 -1.0183 27 1 1.2880 2.0595 0.4706 28 1 3.5495 2.2720 1.2639 29 1 4.1302 0.9281 0.2243 30 1 3.1236 -1.6870 3.6590 31 1 5.7979 -1.4053 4.4446 32 1 5.7809 -2.4923 3.0353 33 1 6.5796 -2.1412 7.8701 34 1 3.5380 -5.1433 4.5556 35 1 4.3643 -4.5995 2.9989 36 1 6.5843 -4.4741 4.2206 37 1 5.7590 -5.0176 5.7776 38 1 2.5697 -1.5785 0.8675 39 1 1.1771 -1.0142 1.8300 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404096529.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:13:10 Heat of formation + Delta-G solvation = -15.233485 kcal Electronic energy + Delta-G solvation = -18909.920128 eV Core-core repulsion = 16045.812156 eV Total energy + Delta-G solvation = -2864.107972 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.85341 -37.98600 -36.61601 -33.31586 -32.13324 -31.98539 -29.29005 -26.49580 -25.76793 -25.04094 -21.97283 -21.15384 -21.03640 -19.59488 -19.11103 -17.08629 -16.26011 -15.96300 -15.30485 -14.76397 -14.57455 -14.47039 -13.99143 -13.72347 -13.45707 -13.09050 -12.72574 -12.53672 -11.86732 -11.75901 -11.69875 -11.60998 -11.27888 -11.14312 -11.02457 -10.96703 -10.79307 -10.54895 -10.28196 -9.66977 -9.27485 -8.99098 -8.53164 -8.46566 -8.28335 -8.09392 -6.10725 -4.19921 3.17324 3.22740 3.31075 3.32542 3.77828 3.95165 4.32378 4.50587 4.70417 4.98489 5.17460 5.20424 5.21788 5.27624 5.32367 5.41140 5.53175 5.56715 5.70605 5.81809 5.93627 6.01878 6.04228 6.28795 6.32544 6.45781 6.56396 6.68357 6.79149 6.87684 6.91736 7.08208 7.27429 7.41125 7.46845 7.78049 8.28756 8.31436 8.80678 8.87325 9.47230 10.97151 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.024562 B = 0.005332 C = 0.005146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.687163 B = 5250.023384 C = 5440.029203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.534 5.534 3 C 0.040 3.960 4 C -0.107 4.107 5 C -0.133 4.133 6 H 0.099 0.901 7 C 0.515 3.485 8 O -0.555 6.555 9 N -0.701 5.701 10 C 0.163 3.837 11 C 0.027 3.973 12 C -0.501 4.501 13 H 0.060 0.940 14 C 0.074 3.926 15 N -0.874 5.874 16 Si 0.889 3.111 17 H -0.281 1.281 18 H -0.273 1.273 19 H -0.286 1.286 20 C -0.210 4.210 21 C -0.148 4.148 22 C 0.053 3.947 23 H 0.027 0.973 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.046 0.954 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.400 0.600 31 H 0.071 0.929 32 H 0.039 0.961 33 H 0.262 0.738 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.504 4.643 -10.115 14.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.258 5.258 3 C -0.088 4.088 4 C -0.145 4.145 5 C -0.156 4.156 6 H 0.117 0.883 7 C 0.299 3.701 8 O -0.434 6.434 9 N -0.349 5.349 10 C 0.040 3.960 11 C 0.026 3.974 12 C -0.539 4.539 13 H 0.078 0.922 14 C -0.130 4.130 15 N -0.510 5.510 16 Si 0.717 3.283 17 H -0.207 1.207 18 H -0.198 1.198 19 H -0.211 1.211 20 C -0.247 4.247 21 C -0.186 4.186 22 C -0.075 4.075 23 H 0.046 0.954 24 H 0.085 0.915 25 H 0.087 0.913 26 H 0.100 0.900 27 H 0.065 0.935 28 H 0.095 0.905 29 H 0.108 0.892 30 H 0.234 0.766 31 H 0.089 0.911 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.374 4.569 -10.682 14.321 hybrid contribution -1.110 0.478 1.974 2.315 sum -9.484 5.047 -8.708 13.829 Atomic orbital electron populations 1.22557 0.87702 1.02167 1.00530 1.63588 1.07873 1.14573 1.39755 1.23116 0.95723 0.89221 1.00724 1.22568 0.97654 0.98603 0.95703 1.22580 0.96063 0.97678 0.99254 0.88304 1.20141 0.90022 0.80401 0.79511 1.90650 1.27345 1.65524 1.59850 1.45998 1.11544 1.34840 1.42552 1.20992 0.85530 0.94909 0.94600 1.19040 0.99008 0.84764 0.94597 1.20339 0.92273 1.47786 0.93472 0.92232 1.24985 0.94737 0.94734 0.98551 1.69970 1.05498 1.44744 1.30793 0.86639 0.79666 0.78503 0.83493 1.20690 1.19807 1.21126 1.23018 0.99311 1.05756 0.96645 1.22492 0.91481 1.04509 1.00106 1.22807 0.97486 0.97053 0.90193 0.95401 0.91460 0.91262 0.90016 0.93522 0.90452 0.89236 0.76625 0.91120 0.94316 0.92815 0.90374 0.91614 0.91679 0.89819 0.89804 0.91834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.12 60.06 0.55 0.72 16 2 N -0.53 -6.26 5.44 -239.51 -1.30 -7.57 16 3 C 0.04 0.43 6.73 -2.30 -0.02 0.41 16 4 C -0.11 -1.38 6.13 -24.59 -0.15 -1.53 16 5 C -0.13 -1.86 3.34 -89.95 -0.30 -2.16 16 6 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 7 C 0.51 9.51 7.02 -10.99 -0.08 9.43 16 8 O -0.55 -12.29 15.76 5.56 0.09 -12.20 16 9 N -0.70 -13.44 5.42 -60.29 -0.33 -13.77 16 10 C 0.16 3.68 5.50 -4.04 -0.02 3.66 16 11 C 0.03 0.62 1.39 -155.66 -0.22 0.40 16 12 C -0.50 -12.73 8.59 -34.44 -0.30 -13.02 16 13 H 0.06 1.48 7.82 -52.49 -0.41 1.07 16 14 C 0.07 1.95 5.40 -17.82 -0.10 1.85 16 15 N -0.87 -24.13 12.90 55.43 0.72 -23.41 16 16 Si 0.89 20.34 29.54 -169.99 -5.02 15.32 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 19 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 20 C -0.21 -4.34 9.96 -26.69 -0.27 -4.60 16 21 C -0.15 -3.37 9.42 -26.69 -0.25 -3.62 16 22 C 0.05 0.66 6.42 -2.83 -0.02 0.64 16 23 H 0.03 0.24 8.10 -51.93 -0.42 -0.18 16 24 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.05 0.45 7.78 -51.93 -0.40 0.04 16 28 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.09 1.32 7.49 -51.93 -0.39 0.94 16 30 H 0.40 7.00 8.32 -40.82 -0.34 6.66 16 31 H 0.07 1.84 8.14 -51.93 -0.42 1.42 16 32 H 0.04 0.87 8.09 -51.93 -0.42 0.45 16 33 H 0.26 6.96 8.32 -40.82 -0.34 6.62 16 34 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 35 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.06 1.42 8.14 -51.93 -0.42 0.99 16 37 H 0.08 2.02 8.14 -51.93 -0.42 1.60 16 38 H 0.08 1.17 7.81 -51.93 -0.41 0.76 16 39 H 0.06 0.71 7.59 -51.93 -0.39 0.31 16 LS Contribution 322.15 15.07 4.85 4.85 Total: -1.00 -29.12 322.15 -8.70 -37.82 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -6.55 Total: 6.76 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -1.16 Total: -7.80 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: -0.92 Total: -44.75 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: 0.09 Total: -12.20 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.12 -8.70 -37.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404096529.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.585 kcal (2) G-P(sol) polarization free energy of solvation -29.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds