Wall clock time and date at job start Mon Mar 30 2020 00:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86801 * 119.99821 * 2 1 4 4 H 1.48499 * 109.47320 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47008 * 120.00503 * 3 2 1 6 6 H 1.48510 * 109.47311 * 240.00081 * 3 2 1 7 7 C 1.37875 * 120.00299 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00074 * 185.69115 * 7 2 1 9 9 C 1.50700 * 119.99892 * 5.68564 * 7 2 1 10 10 C 1.53008 * 115.54837 * 275.20214 * 9 7 2 11 11 N 1.46897 * 109.47066 * 300.49848 * 10 9 7 12 12 C 1.46904 * 110.99756 * 184.87320 * 11 10 9 13 13 C 1.53002 * 109.46646 * 278.97241 * 12 11 10 14 14 C 1.53002 * 109.47284 * 299.99960 * 13 12 11 15 15 C 1.52996 * 109.47096 * 300.00271 * 14 13 12 16 16 C 1.53002 * 109.47096 * 179.97438 * 15 14 13 17 17 N 1.46897 * 109.47277 * 65.00201 * 16 15 14 18 18 C 1.53002 * 109.47275 * 59.99724 * 15 14 13 19 19 C 1.52994 * 109.47442 * 158.97575 * 12 11 10 20 20 C 1.52995 * 117.50250 * 129.53761 * 9 7 2 21 21 C 1.52992 * 117.50260 * 60.87183 * 9 7 2 22 22 H 0.97006 * 120.00140 * 175.12089 * 1 2 3 23 23 H 1.08996 * 109.46742 * 60.49454 * 10 9 7 24 24 H 1.08995 * 109.46611 * 180.49523 * 10 9 7 25 25 H 1.00900 * 111.00250 * 308.82020 * 11 10 9 26 26 H 1.08998 * 109.47598 * 38.96828 * 12 11 10 27 27 H 1.09005 * 109.47158 * 60.00331 * 13 12 11 28 28 H 1.09007 * 109.46811 * 179.97438 * 13 12 11 29 29 H 1.09004 * 109.46993 * 180.02562 * 14 13 12 30 30 H 1.09002 * 109.46793 * 60.00233 * 14 13 12 31 31 H 1.09007 * 109.47009 * 300.00080 * 15 14 13 32 32 H 1.09006 * 109.46918 * 184.99935 * 16 15 14 33 33 H 1.08994 * 109.47031 * 304.99869 * 16 15 14 34 34 H 1.00893 * 111.00319 * 180.02562 * 17 16 15 35 35 H 1.00910 * 110.99472 * 303.95274 * 17 16 15 36 36 H 1.09002 * 109.47334 * 180.02562 * 18 15 14 37 37 H 1.09002 * 109.47015 * 59.99791 * 18 15 14 38 38 H 1.08996 * 109.47779 * 179.97438 * 19 12 11 39 39 H 1.09004 * 109.46879 * 299.99880 * 19 12 11 40 40 H 1.09003 * 117.49669 * 359.97438 * 20 9 7 41 41 H 1.09000 * 117.50484 * 145.01937 * 20 9 7 42 42 H 1.08993 * 117.50489 * 214.98195 * 21 9 7 43 43 H 1.09004 * 117.49796 * 359.97438 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1028 1.6964 1.2124 6 1 3.1028 1.6965 -1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0805 -1.1963 0.0922 9 6 1.2566 -2.4959 -0.1304 10 6 0.7030 -3.0719 1.1745 11 7 1.8084 -3.3108 2.1121 12 6 1.3291 -3.9713 3.3336 13 6 0.7216 -2.9275 4.2729 14 6 1.7849 -1.8896 4.6380 15 6 2.9564 -2.5834 5.3358 16 6 4.0199 -1.5456 5.7003 17 7 3.4731 -0.6123 6.6942 18 6 3.5639 -3.6272 4.3965 19 6 2.5006 -4.6651 4.0315 20 6 1.7421 -3.4869 -1.1901 21 6 0.4370 -2.7158 -1.4034 22 1 -0.4851 -0.8370 -0.0715 23 1 0.0000 -2.3646 1.6144 24 1 0.1916 -4.0121 0.9685 25 1 2.5432 -3.8470 1.6757 26 1 0.5716 -4.7107 3.0736 27 1 -0.1131 -2.4332 3.7757 28 1 0.3656 -3.4177 5.1791 29 1 1.3521 -1.1462 5.3075 30 1 2.1404 -1.3996 3.7316 31 1 2.6007 -3.0735 6.2422 32 1 4.8920 -2.0499 6.1166 33 1 4.3113 -0.9946 4.8062 34 1 4.1567 0.0837 6.9512 35 1 2.6263 -0.1797 6.3564 36 1 4.3982 -4.1218 4.8938 37 1 3.9194 -3.1372 3.4901 38 1 2.1451 -5.1548 4.9381 39 1 2.9334 -5.4087 3.3623 40 1 2.6022 -3.1971 -1.7937 41 1 1.6667 -4.5492 -0.9579 42 1 -0.4963 -3.2712 -1.3115 43 1 0.4384 -1.9187 -2.1469 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000423092246.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:01:07 Heat of formation + Delta-G solvation = -3.378418 kcal Electronic energy + Delta-G solvation = -19886.423398 eV Core-core repulsion = 17158.662594 eV Total energy + Delta-G solvation = -2727.760803 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.02188 -37.03048 -35.05225 -32.35016 -31.72118 -30.41316 -28.99801 -25.25387 -24.39859 -23.74356 -22.20551 -21.25712 -20.38628 -19.26151 -18.64679 -16.60566 -15.95184 -15.17244 -15.01746 -14.73285 -14.06543 -13.76574 -13.68126 -13.36135 -13.23182 -12.85704 -12.45339 -12.28612 -11.79196 -11.69641 -11.56643 -11.36709 -11.04513 -10.76883 -10.67849 -10.64182 -10.40564 -10.16225 -10.07068 -9.77506 -9.59075 -9.43273 -8.59609 -8.45268 -8.35506 -8.21657 -7.49708 -6.22303 -3.92028 3.47183 3.48350 3.66982 4.57662 4.64038 4.76735 4.99002 5.07335 5.16067 5.29419 5.39488 5.45946 5.60190 5.70300 5.74528 5.81908 5.90452 5.95287 6.00785 6.02852 6.12862 6.18154 6.20397 6.31503 6.36042 6.40839 6.52402 6.57816 6.63978 6.67390 6.72240 6.75762 6.91068 7.04705 7.24965 7.27672 7.37654 7.50497 7.95188 8.17526 8.41828 8.54886 9.00395 9.79314 11.17488 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.017107 B = 0.008093 C = 0.006213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.407940 B = 3458.838301 C = 4505.752306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.026 3.974 3 Si 1.064 2.936 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.544 4.544 8 H 0.050 0.950 9 C 0.029 3.971 10 C 0.104 3.896 11 N -0.653 5.653 12 C 0.085 3.915 13 C -0.101 4.101 14 C -0.106 4.106 15 C -0.079 4.079 16 C 0.065 3.935 17 N -0.854 5.854 18 C -0.106 4.106 19 C -0.113 4.113 20 C -0.202 4.202 21 C -0.182 4.182 22 H 0.272 0.728 23 H 0.067 0.933 24 H -0.007 1.007 25 H 0.331 0.669 26 H 0.027 0.973 27 H 0.059 0.941 28 H 0.050 0.950 29 H 0.047 0.953 30 H 0.087 0.913 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.031 0.969 34 H 0.335 0.665 35 H 0.342 0.658 36 H 0.049 0.951 37 H 0.077 0.923 38 H 0.059 0.941 39 H 0.055 0.945 40 H 0.078 0.922 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.777 -6.087 8.905 11.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.179 4.179 3 Si 0.893 3.107 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.218 1.218 7 C -0.582 4.582 8 H 0.068 0.932 9 C 0.028 3.972 10 C -0.025 4.025 11 N -0.283 5.283 12 C -0.025 4.025 13 C -0.139 4.139 14 C -0.144 4.144 15 C -0.097 4.097 16 C -0.066 4.066 17 N -0.384 5.384 18 C -0.144 4.144 19 C -0.151 4.151 20 C -0.239 4.239 21 C -0.220 4.220 22 H 0.084 0.916 23 H 0.085 0.915 24 H 0.011 0.989 25 H 0.149 0.851 26 H 0.045 0.955 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.106 0.894 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.049 0.951 34 H 0.147 0.853 35 H 0.156 0.844 36 H 0.068 0.932 37 H 0.096 0.904 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.097 0.903 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.471 -4.442 9.715 11.580 hybrid contribution 0.098 -1.950 -1.231 2.308 sum 4.569 -6.392 8.484 11.563 Atomic orbital electron populations 1.70724 1.06748 1.31313 1.46069 1.25608 0.96563 1.01901 0.93824 0.83620 0.74906 0.75842 0.76320 1.21084 1.21649 1.21779 1.21058 0.93707 0.89279 1.54140 0.93177 1.19175 0.97559 0.95195 0.85281 1.21612 0.92087 0.95618 0.93176 1.60289 1.11642 1.50823 1.05593 1.21492 0.95072 0.93877 0.92091 1.21420 0.98178 0.96836 0.97456 1.21445 0.94934 0.97277 1.00710 1.21094 0.95445 0.95395 0.97802 1.21836 0.97153 0.94391 0.93232 1.58842 1.10027 1.23924 1.45607 1.21432 0.96831 0.96153 1.00032 1.21624 0.96352 0.97403 0.99761 1.22885 0.98042 0.95318 1.07671 1.22754 0.92727 1.02278 1.04271 0.91640 0.91454 0.98929 0.85080 0.95527 0.92182 0.93169 0.93431 0.89442 0.91638 0.91810 0.95052 0.85321 0.84432 0.93184 0.90410 0.92195 0.92598 0.90304 0.92040 0.91871 0.89860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.70 13.57 55.43 0.75 -25.95 16 2 C 0.03 0.71 5.39 -17.82 -0.10 0.61 16 3 Si 1.06 25.09 29.91 -169.99 -5.08 20.01 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.54 -14.66 8.63 -34.44 -0.30 -14.96 16 8 H 0.05 1.39 7.82 -52.48 -0.41 0.98 16 9 C 0.03 0.68 1.06 -155.66 -0.17 0.52 16 10 C 0.10 2.26 5.30 -3.82 -0.02 2.24 16 11 N -0.65 -12.31 4.60 -106.73 -0.49 -12.80 16 12 C 0.08 1.35 2.81 -67.71 -0.19 1.16 16 13 C -0.10 -1.62 5.49 -26.73 -0.15 -1.77 16 14 C -0.11 -1.69 4.82 -26.73 -0.13 -1.82 16 15 C -0.08 -1.08 2.40 -90.62 -0.22 -1.30 16 16 C 0.06 0.84 6.24 -3.82 -0.02 0.82 16 17 N -0.85 -10.44 9.62 -10.37 -0.10 -10.54 16 18 C -0.11 -1.44 5.05 -26.73 -0.13 -1.57 16 19 C -0.11 -1.52 5.34 -26.73 -0.14 -1.66 16 20 C -0.20 -4.34 9.95 -26.70 -0.27 -4.60 16 21 C -0.18 -4.20 8.65 -26.70 -0.23 -4.43 16 22 H 0.27 7.92 6.20 -40.82 -0.25 7.67 16 23 H 0.07 1.64 7.07 -51.93 -0.37 1.27 16 24 H -0.01 -0.15 7.92 -51.93 -0.41 -0.56 16 25 H 0.33 6.12 8.33 -39.29 -0.33 5.79 16 26 H 0.03 0.44 7.79 -51.93 -0.40 0.03 16 27 H 0.06 1.09 7.31 -51.93 -0.38 0.71 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.72 6.68 -51.93 -0.35 0.38 16 30 H 0.09 1.71 7.60 -51.93 -0.39 1.31 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.34 3.47 9.08 -39.30 -0.36 3.12 16 35 H 0.34 4.24 7.25 -39.29 -0.28 3.95 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 1.20 7.59 -51.93 -0.39 0.81 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.71 8.12 -51.93 -0.42 0.29 16 40 H 0.08 1.71 8.14 -51.93 -0.42 1.28 16 41 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 43 H 0.08 2.06 8.14 -51.93 -0.42 1.64 16 LS Contribution 330.32 15.07 4.98 4.98 Total: -1.00 -28.10 330.32 -9.78 -37.88 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: -7.78 Total: 13.18 kcal Atomic # 6 Polarization: -24.70 SS G_CDS: -2.06 Total: -26.76 kcal Atomic # 7 Polarization: -49.45 SS G_CDS: 0.16 Total: -49.29 kcal Atomic # 14 Polarization: 25.09 SS G_CDS: -5.08 Total: 20.01 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.10 -9.78 -37.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000423092246.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.501 kcal (2) G-P(sol) polarization free energy of solvation -28.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds