Wall clock time and date at job start Mon Mar 30 2020 00:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86801 * 119.99821 * 2 1 4 4 H 1.48499 * 109.47320 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47008 * 120.00503 * 3 2 1 6 6 H 1.48510 * 109.47311 * 240.00081 * 3 2 1 7 7 C 1.37875 * 120.00299 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00074 * 185.69115 * 7 2 1 9 9 C 1.50700 * 119.99892 * 5.68564 * 7 2 1 10 10 C 1.53008 * 115.54837 * 275.20214 * 9 7 2 11 11 N 1.46897 * 109.47066 * 300.49848 * 10 9 7 12 12 C 1.46904 * 110.99756 * 184.87320 * 11 10 9 13 13 C 1.53002 * 109.46646 * 278.97241 * 12 11 10 14 14 C 1.53002 * 109.47284 * 299.99960 * 13 12 11 15 15 C 1.52996 * 109.47096 * 300.00271 * 14 13 12 16 16 C 1.53002 * 109.47096 * 179.97438 * 15 14 13 17 17 N 1.46897 * 109.47277 * 65.00201 * 16 15 14 18 18 C 1.53002 * 109.47275 * 59.99724 * 15 14 13 19 19 C 1.52994 * 109.47442 * 158.97575 * 12 11 10 20 20 C 1.52995 * 117.50250 * 129.53761 * 9 7 2 21 21 C 1.52992 * 117.50260 * 60.87183 * 9 7 2 22 22 H 0.97006 * 120.00140 * 175.12089 * 1 2 3 23 23 H 1.08996 * 109.46742 * 60.49454 * 10 9 7 24 24 H 1.08995 * 109.46611 * 180.49523 * 10 9 7 25 25 H 1.00900 * 111.00250 * 308.82020 * 11 10 9 26 26 H 1.08998 * 109.47598 * 38.96828 * 12 11 10 27 27 H 1.09005 * 109.47158 * 60.00331 * 13 12 11 28 28 H 1.09007 * 109.46811 * 179.97438 * 13 12 11 29 29 H 1.09004 * 109.46993 * 180.02562 * 14 13 12 30 30 H 1.09002 * 109.46793 * 60.00233 * 14 13 12 31 31 H 1.09007 * 109.47009 * 300.00080 * 15 14 13 32 32 H 1.09006 * 109.46918 * 184.99935 * 16 15 14 33 33 H 1.08994 * 109.47031 * 304.99869 * 16 15 14 34 34 H 1.00893 * 111.00319 * 180.02562 * 17 16 15 35 35 H 1.00910 * 110.99472 * 303.95274 * 17 16 15 36 36 H 1.09002 * 109.47334 * 180.02562 * 18 15 14 37 37 H 1.09002 * 109.47015 * 59.99791 * 18 15 14 38 38 H 1.08996 * 109.47779 * 179.97438 * 19 12 11 39 39 H 1.09004 * 109.46879 * 299.99880 * 19 12 11 40 40 H 1.09003 * 117.49669 * 359.97438 * 20 9 7 41 41 H 1.09000 * 117.50484 * 145.01937 * 20 9 7 42 42 H 1.08993 * 117.50489 * 214.98195 * 21 9 7 43 43 H 1.09004 * 117.49796 * 359.97438 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1028 1.6964 1.2124 6 1 3.1028 1.6965 -1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0805 -1.1963 0.0922 9 6 1.2566 -2.4959 -0.1304 10 6 0.7030 -3.0719 1.1745 11 7 1.8084 -3.3108 2.1121 12 6 1.3291 -3.9713 3.3336 13 6 0.7216 -2.9275 4.2729 14 6 1.7849 -1.8896 4.6380 15 6 2.9564 -2.5834 5.3358 16 6 4.0199 -1.5456 5.7003 17 7 3.4731 -0.6123 6.6942 18 6 3.5639 -3.6272 4.3965 19 6 2.5006 -4.6651 4.0315 20 6 1.7421 -3.4869 -1.1901 21 6 0.4370 -2.7158 -1.4034 22 1 -0.4851 -0.8370 -0.0715 23 1 0.0000 -2.3646 1.6144 24 1 0.1916 -4.0121 0.9685 25 1 2.5432 -3.8470 1.6757 26 1 0.5716 -4.7107 3.0736 27 1 -0.1131 -2.4332 3.7757 28 1 0.3656 -3.4177 5.1791 29 1 1.3521 -1.1462 5.3075 30 1 2.1404 -1.3996 3.7316 31 1 2.6007 -3.0735 6.2422 32 1 4.8920 -2.0499 6.1166 33 1 4.3113 -0.9946 4.8062 34 1 4.1567 0.0837 6.9512 35 1 2.6263 -0.1797 6.3564 36 1 4.3982 -4.1218 4.8938 37 1 3.9194 -3.1372 3.4901 38 1 2.1451 -5.1548 4.9381 39 1 2.9334 -5.4087 3.3623 40 1 2.6022 -3.1971 -1.7937 41 1 1.6667 -4.5492 -0.9579 42 1 -0.4963 -3.2712 -1.3115 43 1 0.4384 -1.9187 -2.1469 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000423092246.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:01:07 Heat of formation + Delta-G solvation = -20.760876 kcal Electronic energy + Delta-G solvation = -19887.177158 eV Core-core repulsion = 17158.662594 eV Total energy + Delta-G solvation = -2728.514563 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.30832 -38.76882 -36.31038 -33.92812 -33.54095 -31.62866 -30.26445 -27.14495 -26.09847 -25.06165 -23.39145 -23.05815 -21.56743 -21.19704 -19.91860 -18.53814 -17.04279 -16.69355 -16.24327 -16.06690 -15.62431 -15.37533 -15.23604 -14.94456 -14.43796 -14.31001 -14.24902 -13.74788 -13.34762 -12.99247 -12.90577 -12.79527 -12.62641 -12.44935 -12.26966 -12.13397 -11.96825 -11.86371 -11.42217 -11.25746 -10.97029 -10.79844 -10.41621 -10.36991 -10.16517 -9.60551 -9.00875 -8.42125 -6.11109 1.53055 1.60033 1.78333 2.62066 3.15396 3.34058 3.50047 3.68064 3.82720 3.91038 4.04913 4.19680 4.25862 4.38266 4.44478 4.51139 4.54504 4.58096 4.62118 4.69260 4.72106 4.77203 4.82000 4.90603 4.93563 4.98577 5.06234 5.13368 5.16189 5.30383 5.43245 5.43964 5.46162 5.50486 5.58326 5.75948 6.23102 6.24254 6.35668 6.45907 6.57818 6.74278 6.84534 7.65980 8.98607 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.017107 B = 0.008093 C = 0.006213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.407940 B = 3458.838301 C = 4505.752306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.021 4.021 3 Si 1.103 2.897 4 H -0.290 1.290 5 H -0.278 1.278 6 H -0.276 1.276 7 C -0.545 4.545 8 H 0.038 0.962 9 C 0.002 3.998 10 C 0.122 3.878 11 N -0.659 5.659 12 C 0.084 3.916 13 C -0.100 4.100 14 C -0.099 4.099 15 C -0.070 4.070 16 C 0.067 3.933 17 N -0.855 5.855 18 C -0.103 4.103 19 C -0.106 4.106 20 C -0.175 4.175 21 C -0.187 4.187 22 H 0.263 0.737 23 H 0.032 0.968 24 H 0.004 0.996 25 H 0.335 0.665 26 H 0.028 0.972 27 H 0.028 0.972 28 H 0.074 0.926 29 H 0.050 0.950 30 H 0.045 0.955 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.012 0.988 34 H 0.346 0.654 35 H 0.340 0.660 36 H 0.073 0.927 37 H 0.053 0.947 38 H 0.081 0.919 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.091 0.909 42 H 0.077 0.923 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.083 -7.617 10.170 14.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.220 4.220 3 Si 0.928 3.072 4 H -0.216 1.216 5 H -0.204 1.204 6 H -0.202 1.202 7 C -0.583 4.583 8 H 0.056 0.944 9 C 0.001 3.999 10 C -0.008 4.008 11 N -0.291 5.291 12 C -0.026 4.026 13 C -0.139 4.139 14 C -0.137 4.137 15 C -0.089 4.089 16 C -0.064 4.064 17 N -0.385 5.385 18 C -0.141 4.141 19 C -0.144 4.144 20 C -0.212 4.212 21 C -0.226 4.226 22 H 0.073 0.927 23 H 0.050 0.950 24 H 0.022 0.978 25 H 0.154 0.846 26 H 0.046 0.954 27 H 0.047 0.953 28 H 0.093 0.907 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.030 0.970 34 H 0.159 0.841 35 H 0.153 0.847 36 H 0.092 0.908 37 H 0.072 0.928 38 H 0.100 0.900 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.109 0.891 42 H 0.096 0.904 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.800 -5.989 10.982 13.788 hybrid contribution -0.304 -1.496 -1.615 2.223 sum 5.496 -7.485 9.367 13.190 Atomic orbital electron populations 1.70824 1.07584 1.30786 1.48540 1.26747 0.96660 1.05104 0.93497 0.83097 0.74195 0.72649 0.77295 1.21561 1.20410 1.20203 1.21275 0.93273 0.90888 1.52885 0.94418 1.19258 0.98685 0.95296 0.86675 1.21241 0.92219 0.94952 0.92379 1.60187 1.10935 1.52010 1.05923 1.21587 0.96413 0.93714 0.90900 1.21427 0.97218 0.96964 0.98242 1.21320 0.95893 0.97365 0.99080 1.21030 0.94579 0.95497 0.97809 1.21801 0.97451 0.94324 0.92784 1.58861 1.10291 1.24337 1.44995 1.21402 0.97608 0.96036 0.99089 1.21595 0.94986 0.97244 1.00545 1.22879 0.96737 0.96324 1.05239 1.22671 0.94296 1.02346 1.03237 0.92692 0.94965 0.97764 0.84631 0.95364 0.95287 0.90713 0.93169 0.93647 0.90626 0.90251 0.96958 0.84103 0.84723 0.90797 0.92792 0.90040 0.91405 0.90495 0.89069 0.90432 0.92307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.62 13.57 21.45 0.29 -56.33 16 2 C -0.02 -1.20 5.39 84.66 0.46 -0.75 16 3 Si 1.10 51.31 29.91 68.60 2.05 53.37 16 4 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 5 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 6 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 7 C -0.55 -29.88 8.63 25.60 0.22 -29.66 16 8 H 0.04 2.11 7.82 -2.91 -0.02 2.09 16 9 C 0.00 0.08 1.06 -52.93 -0.06 0.02 16 10 C 0.12 5.33 5.30 86.31 0.46 5.78 16 11 N -0.66 -24.69 4.60 -491.57 -2.26 -26.95 16 12 C 0.08 2.56 2.81 44.91 0.13 2.68 16 13 C -0.10 -3.18 5.49 30.60 0.17 -3.01 16 14 C -0.10 -3.14 4.82 30.59 0.15 -3.00 16 15 C -0.07 -1.81 2.40 -10.79 -0.03 -1.84 16 16 C 0.07 1.66 6.24 86.30 0.54 2.19 16 17 N -0.85 -19.57 9.62 -186.72 -1.80 -21.37 16 18 C -0.10 -2.54 5.05 30.59 0.15 -2.39 16 19 C -0.11 -2.51 5.34 30.59 0.16 -2.35 16 20 C -0.17 -7.25 9.95 30.62 0.30 -6.95 16 21 C -0.19 -8.65 8.65 30.62 0.26 -8.39 16 22 H 0.26 15.86 6.20 -92.70 -0.57 15.28 16 23 H 0.03 1.62 7.07 -2.39 -0.02 1.61 16 24 H 0.00 0.18 7.92 -2.39 -0.02 0.16 16 25 H 0.34 12.02 8.33 -89.69 -0.75 11.27 16 26 H 0.03 0.87 7.79 -2.39 -0.02 0.85 16 27 H 0.03 1.07 7.31 -2.38 -0.02 1.06 16 28 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 29 H 0.05 1.53 6.68 -2.38 -0.02 1.51 16 30 H 0.04 1.83 7.60 -2.39 -0.02 1.81 16 31 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 32 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 33 H 0.01 0.34 8.14 -2.39 -0.02 0.33 16 34 H 0.35 6.62 9.08 -89.70 -0.81 5.81 16 35 H 0.34 8.13 7.25 -89.69 -0.65 7.48 16 36 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.05 1.60 7.59 -2.39 -0.02 1.58 16 38 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.07 1.48 8.12 -2.38 -0.02 1.46 16 40 H 0.08 3.22 8.14 -2.39 -0.02 3.20 16 41 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 42 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 43 H 0.06 2.97 8.14 -2.39 -0.02 2.95 16 Total: -1.00 -61.40 330.32 0.18 -61.22 By element: Atomic # 1 Polarization: 38.73 SS G_CDS: -1.03 Total: 37.71 kcal Atomic # 6 Polarization: -50.57 SS G_CDS: 2.92 Total: -47.65 kcal Atomic # 7 Polarization: -100.88 SS G_CDS: -3.77 Total: -104.64 kcal Atomic # 14 Polarization: 51.31 SS G_CDS: 2.05 Total: 53.37 kcal Total: -61.40 0.18 -61.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000423092246.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.457 kcal (2) G-P(sol) polarization free energy of solvation -61.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds