Wall clock time and date at job start Mon Mar 30 2020 00:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99924 * 2 1 4 4 H 1.48505 * 109.47120 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46804 * 299.99887 * 3 2 1 6 6 H 1.48496 * 109.47549 * 59.99451 * 3 2 1 7 7 C 1.37875 * 120.00189 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00290 * 157.83723 * 7 2 1 9 9 C 1.50701 * 119.99810 * 337.84011 * 7 2 1 10 10 C 1.53000 * 115.55082 * 324.24312 * 9 7 2 11 11 N 1.46897 * 109.47452 * 280.07031 * 10 9 7 12 12 C 1.46900 * 111.00071 * 181.73631 * 11 10 9 13 13 H 1.08994 * 109.47332 * 325.36264 * 12 11 10 14 14 C 1.53002 * 109.47093 * 85.36403 * 12 11 10 15 15 C 1.53003 * 109.47075 * 59.99735 * 14 12 11 16 16 C 1.53011 * 109.47060 * 60.00163 * 15 14 12 17 17 C 1.52995 * 109.46889 * 300.00099 * 16 15 14 18 18 C 1.52992 * 109.47588 * 59.99601 * 17 16 15 19 19 H 1.09004 * 109.46771 * 60.00142 * 18 17 16 20 20 C 1.52999 * 109.47249 * 179.97438 * 18 17 16 21 21 N 1.46897 * 109.47374 * 295.00479 * 20 18 17 22 22 C 1.53000 * 117.52025 * 109.94657 * 9 7 2 23 23 C 1.53004 * 60.00099 * 107.47968 * 22 9 7 24 24 H 0.97004 * 120.00314 * 4.44490 * 1 2 3 25 25 H 1.09001 * 109.47113 * 160.06754 * 10 9 7 26 26 H 1.09000 * 109.47247 * 40.07062 * 10 9 7 27 27 H 1.00898 * 110.99739 * 305.69070 * 11 10 9 28 28 H 1.08995 * 109.47238 * 179.97438 * 14 12 11 29 29 H 1.08993 * 109.47109 * 300.00316 * 14 12 11 30 30 H 1.08996 * 109.47220 * 179.97438 * 15 14 12 31 31 H 1.08996 * 109.47562 * 300.00180 * 15 14 12 32 32 H 1.08993 * 109.46886 * 60.00149 * 16 15 14 33 33 H 1.09003 * 109.46782 * 179.97438 * 16 15 14 34 34 H 1.08997 * 109.46863 * 180.02562 * 17 16 15 35 35 H 1.09004 * 109.46949 * 299.99852 * 17 16 15 36 36 H 1.09001 * 109.46651 * 55.01029 * 20 18 17 37 37 H 1.09007 * 109.46892 * 175.00502 * 20 18 17 38 38 H 1.00900 * 110.99765 * 179.97438 * 21 20 18 39 39 H 1.00901 * 110.99807 * 303.95191 * 21 20 18 40 40 H 1.09002 * 117.50135 * 214.96879 * 22 9 7 41 41 H 1.09000 * 117.49614 * 359.97438 * 22 9 7 42 42 H 1.08992 * 117.49856 * 252.51302 * 23 22 9 43 43 H 1.08998 * 117.49684 * 107.48916 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0246 -1.2287 -0.3523 9 6 1.3345 -2.4507 0.4934 10 6 0.3703 -2.2676 1.6672 11 7 1.1341 -2.1754 2.9185 12 6 0.2372 -2.0401 4.0740 13 1 -0.6355 -1.4523 3.7897 14 6 -0.2113 -3.4278 4.5368 15 6 1.0138 -4.2529 4.9360 16 6 1.7532 -3.5493 6.0759 17 6 2.2016 -2.1617 5.6132 18 6 0.9766 -1.3366 5.2139 19 1 0.3111 -1.2362 6.0713 20 6 1.4250 0.0513 4.7517 21 7 2.0281 0.7722 5.8806 22 6 0.9896 -3.5213 -0.5438 23 6 2.1410 -3.7497 0.4377 24 1 -0.4851 0.8375 -0.0651 25 1 -0.3073 -3.1200 1.7170 26 1 -0.2058 -1.3533 1.5249 27 1 1.7469 -2.9696 3.0275 28 1 -0.8764 -3.3274 5.3944 29 1 -0.7379 -3.9290 3.7247 30 1 0.6943 -5.2413 5.2661 31 1 1.6794 -4.3533 4.0786 32 1 1.0877 -3.4490 6.9332 33 1 2.6257 -4.1374 6.3606 34 1 2.7287 -1.6607 6.4251 35 1 2.8671 -2.2621 4.7557 36 1 2.1589 -0.0516 3.9524 37 1 0.5629 0.6079 4.3840 38 1 2.3330 1.6924 5.6006 39 1 1.3887 0.8242 6.6594 40 1 0.0758 -4.0953 -0.3899 41 1 1.2470 -3.3167 -1.5830 42 1 3.1560 -3.6954 0.0441 43 1 1.9847 -4.4739 1.2372 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000423092976.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:02:06 Heat of formation + Delta-G solvation = 7.141947 kcal Electronic energy + Delta-G solvation = -20198.199105 eV Core-core repulsion = 17470.894499 eV Total energy + Delta-G solvation = -2727.304606 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.21581 -36.63321 -34.33271 -32.89929 -32.10161 -29.94133 -28.90084 -25.63250 -24.24809 -23.82482 -21.99734 -21.03644 -20.67149 -18.91086 -18.43870 -16.50497 -15.63835 -15.08299 -14.61628 -14.51039 -14.28991 -14.10405 -13.75656 -13.61934 -13.02726 -12.70628 -12.33702 -11.93271 -11.70021 -11.54353 -11.43604 -11.27996 -11.06994 -10.87901 -10.63861 -10.47760 -10.40505 -10.16432 -10.03109 -9.83251 -9.69867 -9.14548 -9.07174 -8.63332 -8.34034 -7.92096 -7.29328 -6.02566 -3.93464 3.31325 3.40798 3.47435 4.45316 4.81147 4.85701 5.05073 5.08073 5.15955 5.25236 5.47980 5.63231 5.68578 5.72337 5.80013 5.84737 5.90256 5.96426 6.14766 6.17636 6.22001 6.26237 6.38779 6.41641 6.46662 6.55950 6.64017 6.68657 6.72201 6.77779 6.83806 6.94388 7.01931 7.15841 7.38814 7.43701 7.70858 7.71632 8.07260 8.16984 8.38066 8.60517 8.97634 9.61183 11.02025 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.017377 B = 0.009192 C = 0.006802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.971407 B = 3045.488996 C = 4115.499736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.081 3.919 3 Si 0.884 3.116 4 H -0.272 1.272 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.478 4.478 8 H 0.058 0.942 9 C 0.067 3.933 10 C 0.089 3.911 11 N -0.662 5.662 12 C 0.091 3.909 13 H 0.070 0.930 14 C -0.147 4.147 15 C -0.120 4.120 16 C -0.118 4.118 17 C -0.104 4.104 18 C -0.064 4.064 19 H 0.054 0.946 20 C 0.071 3.929 21 N -0.852 5.852 22 C -0.207 4.207 23 C -0.213 4.213 24 H 0.259 0.741 25 H -0.012 1.012 26 H 0.118 0.882 27 H 0.327 0.673 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.094 0.906 37 H 0.019 0.981 38 H 0.336 0.664 39 H 0.329 0.671 40 H 0.060 0.940 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.139 -3.381 11.328 11.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.121 4.121 3 Si 0.712 3.288 4 H -0.197 1.197 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.515 4.515 8 H 0.076 0.924 9 C 0.066 3.934 10 C -0.039 4.039 11 N -0.293 5.293 12 C -0.020 4.020 13 H 0.088 0.912 14 C -0.187 4.187 15 C -0.157 4.157 16 C -0.155 4.155 17 C -0.142 4.142 18 C -0.084 4.084 19 H 0.072 0.928 20 C -0.059 4.059 21 N -0.380 5.380 22 C -0.245 4.245 23 C -0.251 4.251 24 H 0.069 0.931 25 H 0.006 0.994 26 H 0.135 0.865 27 H 0.147 0.853 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.112 0.888 37 H 0.038 0.962 38 H 0.148 0.852 39 H 0.140 0.860 40 H 0.078 0.922 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.358 -3.151 11.300 11.736 hybrid contribution -0.836 0.475 -0.198 0.982 sum -0.478 -2.676 11.101 11.429 Atomic orbital electron populations 1.69916 1.06233 1.26470 1.48356 1.24815 0.94425 0.98774 0.94118 0.86684 0.80831 0.83979 0.77307 1.19691 1.21634 1.20861 1.20392 0.98448 0.90706 1.41936 0.92404 1.18917 0.94447 0.87528 0.92496 1.21802 0.94163 1.01168 0.86737 1.60554 1.20346 1.47650 1.00723 1.21492 0.95181 0.93857 0.91479 0.91172 1.22181 0.97690 0.98058 1.00731 1.21522 0.97409 0.98034 0.98779 1.21552 0.99326 0.97083 0.97571 1.21431 0.97619 0.93652 1.01488 1.21035 0.96542 0.94562 0.96212 0.92760 1.21778 0.98354 0.92819 0.92925 1.58819 1.45856 1.23322 1.10039 1.22992 0.96882 1.08036 0.96601 1.22807 0.95802 1.04055 1.02414 0.93102 0.99354 0.86451 0.85260 0.92407 0.92320 0.92764 0.91763 0.92820 0.92633 0.91653 0.91148 0.88798 0.96248 0.85241 0.86048 0.92165 0.90537 0.90794 0.92064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.96 11.15 55.43 0.62 -23.34 16 2 C 0.08 2.19 5.03 -17.82 -0.09 2.10 16 3 Si 0.88 21.10 29.60 -169.99 -5.03 16.07 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.48 -12.97 8.97 -34.44 -0.31 -13.28 16 8 H 0.06 1.60 7.91 -52.49 -0.42 1.19 16 9 C 0.07 1.64 1.93 -155.66 -0.30 1.34 16 10 C 0.09 2.04 5.16 -3.83 -0.02 2.02 16 11 N -0.66 -12.91 5.10 -106.73 -0.54 -13.45 16 12 C 0.09 1.52 2.30 -67.71 -0.16 1.37 16 13 H 0.07 1.28 7.82 -51.93 -0.41 0.87 16 14 C -0.15 -2.14 5.52 -26.73 -0.15 -2.29 16 15 C -0.12 -1.60 5.67 -26.72 -0.15 -1.75 16 16 C -0.12 -1.48 5.92 -26.73 -0.16 -1.64 16 17 C -0.10 -1.49 4.85 -26.74 -0.13 -1.62 16 18 C -0.06 -0.96 2.15 -90.62 -0.19 -1.15 16 19 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 20 C 0.07 1.17 5.94 -3.83 -0.02 1.15 16 21 N -0.85 -11.57 9.08 -10.37 -0.09 -11.67 16 22 C -0.21 -4.78 9.88 -26.73 -0.26 -5.05 16 23 C -0.21 -4.64 9.48 -26.73 -0.25 -4.90 16 24 H 0.26 6.81 8.32 -40.82 -0.34 6.47 16 25 H -0.01 -0.26 7.23 -51.93 -0.38 -0.64 16 26 H 0.12 3.03 5.39 -51.93 -0.28 2.75 16 27 H 0.33 6.20 5.00 -39.29 -0.20 6.00 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.91 7.45 -51.93 -0.39 0.52 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.94 6.25 -51.93 -0.32 0.61 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.93 7.75 -51.93 -0.40 0.52 16 35 H 0.07 1.14 7.22 -51.93 -0.37 0.76 16 36 H 0.09 1.84 7.77 -51.93 -0.40 1.44 16 37 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.34 4.27 9.08 -39.29 -0.36 3.91 16 39 H 0.33 3.83 8.99 -39.29 -0.35 3.48 16 40 H 0.06 1.32 8.09 -51.93 -0.42 0.90 16 41 H 0.08 1.81 8.14 -51.93 -0.42 1.38 16 42 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 43 H 0.06 1.21 8.02 -51.93 -0.42 0.80 16 LS Contribution 326.47 15.07 4.92 4.92 Total: -1.00 -26.73 326.47 -9.96 -36.69 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: -7.63 Total: 14.49 kcal Atomic # 6 Polarization: -21.51 SS G_CDS: -2.20 Total: -23.70 kcal Atomic # 7 Polarization: -48.44 SS G_CDS: -0.02 Total: -48.46 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.03 Total: 16.07 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -26.73 -9.96 -36.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000423092976.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.827 kcal (2) G-P(sol) polarization free energy of solvation -26.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds