Wall clock time and date at job start Sun Mar 29 2020 23:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46904 * 111.00033 * 2 1 4 4 C 1.38498 * 110.99893 * 123.95742 * 2 1 3 5 5 N 1.31202 * 125.79152 * 296.65269 * 4 2 1 6 6 C 1.34384 * 109.30458 * 179.97438 * 5 4 2 7 7 C 1.34375 * 108.31885 * 0.02562 * 6 5 4 8 8 C 1.50706 * 126.52815 * 180.02562 * 7 6 5 9 9 N 1.46897 * 109.47187 * 95.01933 * 8 7 6 10 10 C 1.46900 * 110.99798 * 180.02562 * 9 8 7 11 11 C 1.52997 * 109.47248 * 180.02562 * 10 9 8 12 12 C 1.50702 * 109.47168 * 180.02562 * 11 10 9 13 13 H 1.07995 * 120.00019 * 0.02562 * 12 11 10 14 14 C 1.37876 * 119.99553 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00769 * 359.97438 * 14 12 11 16 16 Si 1.86810 * 119.99610 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47251 * 59.99845 * 16 14 12 18 18 H 1.48496 * 109.46923 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.46610 * 299.99374 * 16 14 12 20 20 N 1.36028 * 125.78838 * 116.93238 * 4 2 1 21 21 C 1.46491 * 126.49910 * 0.05205 * 20 4 2 22 22 H 1.09002 * 109.47021 * 296.04380 * 1 2 3 23 23 H 1.08997 * 109.47038 * 56.04428 * 1 2 3 24 24 H 1.08997 * 109.47353 * 176.04986 * 1 2 3 25 25 H 1.08998 * 109.46912 * 178.32218 * 3 2 1 26 26 H 1.08993 * 109.47006 * 298.31825 * 3 2 1 27 27 H 1.09000 * 109.46768 * 58.32250 * 3 2 1 28 28 H 1.07995 * 125.83801 * 180.02562 * 6 5 4 29 29 H 1.08999 * 109.46425 * 335.02046 * 8 7 6 30 30 H 1.08998 * 109.47186 * 215.02926 * 8 7 6 31 31 H 1.00901 * 110.99556 * 56.05363 * 9 8 7 32 32 H 1.09003 * 109.47511 * 300.00507 * 10 9 8 33 33 H 1.09004 * 109.46944 * 60.00212 * 10 9 8 34 34 H 1.09003 * 109.47011 * 300.00486 * 11 10 9 35 35 H 1.09004 * 109.47242 * 60.00067 * 11 10 9 36 36 H 0.96999 * 120.00700 * 179.97438 * 15 14 12 37 37 H 1.08998 * 109.47400 * 265.62708 * 21 20 4 38 38 H 1.09003 * 109.47069 * 25.62158 * 21 20 4 39 39 H 1.09002 * 109.47426 * 145.62488 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9653 -0.7222 1.0725 5 7 1.7946 -0.4290 2.3399 6 6 2.4156 -1.3498 3.0965 7 6 2.9936 -2.2471 2.2802 8 6 3.7961 -3.4527 2.6970 9 7 2.9224 -4.6330 2.7357 10 6 3.6721 -5.8299 3.1398 11 6 2.7310 -7.0359 3.1678 12 6 3.5000 -8.2636 3.5829 13 1 4.5544 -8.1910 3.8050 14 6 2.8574 -9.4797 3.6792 15 7 1.5733 -9.5682 3.4093 16 14 3.8105 -11.0015 4.1945 17 1 4.3851 -10.7912 5.5476 18 1 2.8971 -12.1719 4.2216 19 1 4.9068 -11.2509 3.2243 20 7 2.7170 -1.8530 0.9904 21 6 3.1483 -2.5254 -0.2375 22 1 -0.3633 0.4512 0.9233 23 1 -0.3633 0.5740 -0.8524 24 1 -0.3634 -1.0252 -0.0708 25 1 3.0847 1.3425 0.0301 26 1 1.6706 1.8853 -0.9046 27 1 1.6219 1.9040 0.8746 28 1 2.4451 -1.3658 4.1759 29 1 4.2205 -3.2822 3.6864 30 1 4.6005 -3.6193 1.9806 31 1 2.4664 -4.7745 1.8468 32 1 4.4759 -6.0132 2.4266 33 1 4.0953 -5.6756 4.1324 34 1 1.9270 -6.8528 3.8807 35 1 2.3082 -7.1900 2.1750 36 1 1.1213 -10.4237 3.4767 37 1 2.4391 -3.3144 -0.4880 38 1 3.1900 -1.8024 -1.0522 39 1 4.1365 -2.9597 -0.0861 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425344620.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:56:32 Heat of formation + Delta-G solvation = 68.940012 kcal Electronic energy + Delta-G solvation = -18232.410690 eV Core-core repulsion = 15404.245506 eV Total energy + Delta-G solvation = -2828.165184 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.01621 -37.32260 -35.92725 -33.90554 -33.01763 -30.67459 -28.38365 -27.86446 -27.02484 -25.53142 -24.12758 -23.02717 -20.83195 -20.38849 -19.59372 -17.22603 -16.38587 -16.10192 -15.65135 -15.27020 -14.81546 -14.59755 -14.42738 -13.86897 -13.71069 -13.33613 -12.84454 -12.73300 -12.48048 -12.41718 -12.38047 -12.10221 -11.96932 -11.85099 -11.09742 -10.93869 -10.60279 -10.16974 -9.98274 -9.54683 -9.42440 -9.20333 -9.04105 -8.37576 -8.22327 -7.86955 -6.01385 -4.04618 1.94745 2.51249 3.10019 3.32152 3.36807 3.38877 3.75053 4.42182 4.66915 4.74840 4.80286 4.96565 5.09013 5.12274 5.16573 5.25664 5.31730 5.34410 5.38491 5.44088 5.60322 5.67624 5.73472 5.89758 6.15400 6.25667 6.32844 6.49092 6.54829 6.84013 6.91923 7.38081 7.46213 7.67032 7.75417 7.87730 8.04878 8.07347 8.40049 9.02436 9.59325 11.09932 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.045852 B = 0.003468 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.509890 B = 8070.817157 C = 8197.327715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.474 5.474 3 C 0.038 3.962 4 C 0.359 3.641 5 N -0.507 5.507 6 C -0.003 4.003 7 C -0.004 4.004 8 C 0.135 3.865 9 N -0.684 5.684 10 C 0.066 3.934 11 C 0.026 3.974 12 C -0.524 4.524 13 H 0.054 0.946 14 C 0.058 3.942 15 N -0.893 5.893 16 Si 0.893 3.107 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.277 1.277 20 N -0.443 5.443 21 C 0.076 3.924 22 H 0.045 0.955 23 H 0.076 0.924 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.076 0.924 27 H 0.044 0.956 28 H 0.171 0.829 29 H 0.094 0.906 30 H 0.030 0.970 31 H 0.334 0.666 32 H 0.016 0.984 33 H 0.062 0.938 34 H 0.026 0.974 35 H 0.012 0.988 36 H 0.261 0.739 37 H 0.077 0.923 38 H 0.092 0.908 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.073 19.231 -8.564 21.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.198 5.198 3 C -0.110 4.110 4 C 0.008 3.992 5 N -0.230 5.230 6 C -0.153 4.153 7 C -0.118 4.118 8 C 0.004 3.996 9 N -0.315 5.315 10 C -0.062 4.062 11 C -0.011 4.011 12 C -0.562 4.562 13 H 0.072 0.928 14 C -0.143 4.143 15 N -0.532 5.532 16 Si 0.721 3.279 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.203 1.203 20 N -0.129 5.129 21 C -0.067 4.067 22 H 0.064 0.936 23 H 0.095 0.905 24 H 0.088 0.912 25 H 0.085 0.915 26 H 0.095 0.905 27 H 0.063 0.937 28 H 0.188 0.812 29 H 0.112 0.888 30 H 0.048 0.952 31 H 0.151 0.849 32 H 0.034 0.966 33 H 0.081 0.919 34 H 0.045 0.955 35 H 0.031 0.969 36 H 0.071 0.929 37 H 0.095 0.905 38 H 0.110 0.890 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.471 19.597 -8.216 21.301 hybrid contribution 1.139 -1.482 -0.252 1.886 sum 2.610 18.116 -8.468 20.167 Atomic orbital electron populations 1.22392 0.84074 1.02963 1.01688 1.58670 1.09660 1.14623 1.36894 1.22363 1.00458 0.86452 1.01710 1.20655 0.99499 0.89810 0.89212 1.70638 1.23672 1.28100 1.00564 1.21895 1.00800 0.93166 0.99444 1.21261 1.07192 1.00746 0.82634 1.20312 0.91921 0.86437 1.00897 1.60653 1.31591 1.03463 1.35824 1.22209 0.95917 0.89412 0.98680 1.19059 0.94674 0.89928 0.97484 1.21126 0.95632 0.93092 1.46398 0.92753 1.25005 0.94875 0.99037 0.95406 1.69959 1.08901 1.25386 1.48947 0.86640 0.79681 0.82361 0.79197 1.20173 1.21256 1.20298 1.45323 1.39721 1.21013 1.06830 1.21977 1.01097 0.98501 0.85122 0.93605 0.90495 0.91194 0.91541 0.90526 0.93685 0.81211 0.88752 0.95200 0.84896 0.96589 0.91947 0.95538 0.96925 0.92886 0.90486 0.88972 0.90147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 9.51 60.07 0.57 0.93 16 2 N -0.47 -5.32 4.88 -190.47 -0.93 -6.25 16 3 C 0.04 0.34 9.50 60.07 0.57 0.91 16 4 C 0.36 5.01 6.31 -319.60 -2.02 2.99 16 5 N -0.51 -7.94 11.19 -13.92 -0.16 -8.09 16 6 C 0.00 -0.05 11.76 -17.80 -0.21 -0.26 16 7 C 0.00 -0.05 6.48 -81.33 -0.53 -0.58 16 8 C 0.13 1.93 5.95 -4.97 -0.03 1.90 16 9 N -0.68 -12.12 6.49 -115.06 -0.75 -12.87 16 10 C 0.07 1.35 5.62 -3.83 -0.02 1.32 16 11 C 0.03 0.67 5.23 -27.88 -0.15 0.53 16 12 C -0.52 -14.77 9.11 -34.44 -0.31 -15.09 16 13 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 15 N -0.89 -26.93 13.29 55.43 0.74 -26.19 16 16 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 N -0.44 -5.92 3.20 -120.31 -0.39 -6.31 16 21 C 0.08 0.77 10.94 59.84 0.65 1.42 16 22 H 0.05 0.50 8.12 -51.93 -0.42 0.07 16 23 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.07 0.61 8.11 -51.93 -0.42 0.19 16 26 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.17 2.29 8.06 -52.49 -0.42 1.87 16 29 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 30 H 0.03 0.40 7.49 -51.93 -0.39 0.01 16 31 H 0.33 5.87 8.72 -39.29 -0.34 5.52 16 32 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.09 0.80 8.03 -51.93 -0.42 0.38 16 39 H 0.08 0.74 7.47 -51.93 -0.39 0.35 16 LS Contribution 329.24 15.07 4.96 4.96 Total: -1.00 -32.30 329.24 -9.68 -41.98 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -6.57 Total: 0.56 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -1.56 Total: -4.34 kcal Atomic # 7 Polarization: -58.23 SS G_CDS: -1.48 Total: -59.71 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.30 -9.68 -41.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425344620.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.919 kcal (2) G-P(sol) polarization free energy of solvation -32.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds