Wall clock time and date at job start Sun Mar 29 2020 23:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42899 * 113.99690 * 2 1 4 4 H 1.09001 * 109.47203 * 30.00201 * 3 2 1 5 5 C 1.53004 * 109.47164 * 269.99773 * 3 2 1 6 6 N 1.46902 * 109.46858 * 65.00266 * 5 3 2 7 7 C 1.46904 * 110.99662 * 190.00227 * 6 5 3 8 8 C 1.50704 * 109.46644 * 168.86452 * 7 6 5 9 9 H 1.07993 * 120.00243 * 355.00255 * 8 7 6 10 10 C 1.37877 * 119.99402 * 175.00399 * 8 7 6 11 11 N 1.31512 * 120.00224 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 119.99748 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.46993 * 60.00103 * 12 10 8 14 14 H 1.48505 * 109.47080 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47401 * 300.00100 * 12 10 8 16 16 C 1.46898 * 111.00017 * 66.04461 * 6 5 3 17 17 C 1.52998 * 109.47022 * 61.39328 * 16 6 5 18 18 C 1.47201 * 109.47041 * 179.43712 * 17 16 6 19 19 N 6.58392 * 73.16964 * 354.65486 * 2 1 3 20 20 C 1.53005 * 109.47008 * 149.99997 * 3 2 1 21 21 C 1.52996 * 117.49995 * 8.74723 * 20 3 2 22 22 C 1.53001 * 117.49664 * 300.08225 * 20 3 2 23 23 H 1.08993 * 109.47164 * 300.00087 * 1 2 3 24 24 H 1.08999 * 109.46473 * 180.02562 * 1 2 3 25 25 H 1.08991 * 109.46936 * 60.00185 * 1 2 3 26 26 H 1.09001 * 109.46964 * 184.99913 * 5 3 2 27 27 H 1.08996 * 109.46884 * 305.00652 * 5 3 2 28 28 H 1.09000 * 109.46909 * 288.85810 * 7 6 5 29 29 H 1.08997 * 109.46959 * 48.86457 * 7 6 5 30 30 H 0.97006 * 119.99851 * 180.02562 * 11 10 8 31 31 H 1.09003 * 109.46602 * 181.38658 * 16 6 5 32 32 H 1.08999 * 109.47336 * 301.38517 * 16 6 5 33 33 H 1.09001 * 109.46933 * 299.43246 * 17 16 6 34 34 H 1.08999 * 109.47653 * 59.43445 * 17 16 6 35 35 H 1.08995 * 115.54560 * 154.41665 * 20 3 2 36 36 H 1.08999 * 117.49717 * 359.97438 * 21 20 3 37 37 H 1.08992 * 117.49993 * 145.02443 * 21 20 3 38 38 H 1.09000 * 117.49629 * 214.97878 * 22 20 3 39 39 H 1.08997 * 117.49901 * 359.97438 * 22 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2177 1.7714 -1.4425 6 7 0.9129 1.9269 -2.0993 7 6 1.0729 2.1414 -3.5438 8 6 -0.2685 2.0236 -4.2206 9 1 -1.1375 1.7316 -3.6499 10 6 -0.3860 2.2888 -5.5685 11 7 0.6722 2.6449 -6.2634 12 14 -2.0485 2.1422 -6.4077 13 1 -3.0081 3.0806 -5.7724 14 1 -1.9076 2.4783 -7.8473 15 1 -2.5514 0.7517 -6.2704 16 6 0.1421 3.0173 -1.4872 17 6 0.9024 4.3347 -1.6526 18 6 0.1237 5.4295 -1.0511 19 7 -0.4772 6.2745 -0.5871 20 6 3.3589 1.2633 0.7213 21 6 3.9154 -0.1109 1.0991 22 6 3.3637 0.8169 2.1847 23 1 -0.3633 0.5138 0.8899 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8899 26 1 2.7413 2.7274 -1.4438 27 1 2.8099 1.0319 -1.9815 28 1 1.4828 3.1359 -3.7201 29 1 1.7517 1.3913 -3.9494 30 1 0.5894 2.8318 -7.2116 31 1 -0.8291 3.0946 -1.9761 32 1 -0.0005 2.8107 -0.4265 33 1 1.8695 4.2608 -1.1552 34 1 1.0537 4.5363 -2.7130 35 1 4.0734 2.0321 0.4273 36 1 3.3204 -0.9849 0.8342 37 1 4.9959 -0.2460 1.0542 38 1 4.0818 1.2916 2.8533 39 1 2.4061 0.5536 2.6337 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425420459.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:37:46 Heat of formation + Delta-G solvation = 11.963423 kcal Electronic energy + Delta-G solvation = -19126.284452 eV Core-core repulsion = 16263.355826 eV Total energy + Delta-G solvation = -2862.928626 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.19512 -37.29225 -35.97277 -35.57387 -32.71205 -30.73966 -29.39108 -26.79490 -25.52141 -24.41753 -22.69593 -22.22486 -20.18020 -19.66540 -17.51837 -16.43348 -16.30226 -15.84851 -15.33456 -14.87511 -14.54532 -14.33482 -14.02331 -13.60115 -13.41229 -12.99350 -12.60965 -12.27362 -12.07202 -11.88356 -11.62967 -11.47654 -11.39805 -11.17713 -10.96873 -10.83742 -10.77143 -10.64105 -10.32663 -10.26493 -9.96501 -9.78603 -9.46406 -8.96907 -8.49338 -7.35660 -6.09733 -4.11449 3.05081 3.08055 3.30189 3.35090 3.37527 3.79494 4.20076 4.27966 4.38632 4.63866 5.00558 5.03860 5.09069 5.26406 5.32441 5.47631 5.51267 5.54835 5.68075 5.71652 5.74758 5.78201 5.92262 5.97439 6.07980 6.18241 6.22213 6.34990 6.43067 6.45621 6.53627 7.14624 7.21052 7.61247 7.70394 7.83240 7.96827 8.03768 8.40804 8.95745 9.53702 11.00470 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.018628 B = 0.006428 C = 0.005472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.747499 B = 4354.963647 C = 5116.109384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.376 6.376 3 C 0.123 3.877 4 H 0.060 0.940 5 C 0.029 3.971 6 N -0.523 5.523 7 C 0.187 3.813 8 C -0.510 4.510 9 H 0.063 0.937 10 C 0.059 3.941 11 N -0.897 5.897 12 Si 0.894 3.106 13 H -0.278 1.278 14 H -0.288 1.288 15 H -0.276 1.276 16 C 0.066 3.934 17 C -0.074 4.074 18 C 0.224 3.776 19 N -0.461 5.461 20 C -0.157 4.157 21 C -0.163 4.163 22 C -0.180 4.180 23 H 0.023 0.977 24 H 0.072 0.928 25 H 0.081 0.919 26 H 0.038 0.962 27 H 0.081 0.919 28 H 0.004 0.996 29 H 0.030 0.970 30 H 0.262 0.738 31 H 0.093 0.907 32 H 0.061 0.939 33 H 0.100 0.900 34 H 0.123 0.877 35 H 0.111 0.889 36 H 0.106 0.894 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.960 -2.904 12.325 13.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.295 6.295 3 C 0.065 3.935 4 H 0.078 0.922 5 C -0.099 4.099 6 N -0.246 5.246 7 C 0.063 3.937 8 C -0.549 4.549 9 H 0.081 0.919 10 C -0.143 4.143 11 N -0.536 5.536 12 Si 0.722 3.278 13 H -0.203 1.203 14 H -0.214 1.214 15 H -0.201 1.201 16 C -0.065 4.065 17 C -0.116 4.116 18 C -0.094 4.094 19 N -0.139 5.139 20 C -0.175 4.175 21 C -0.199 4.199 22 C -0.217 4.217 23 H 0.041 0.959 24 H 0.090 0.910 25 H 0.099 0.901 26 H 0.055 0.945 27 H 0.099 0.901 28 H 0.022 0.978 29 H 0.049 0.951 30 H 0.072 0.928 31 H 0.111 0.889 32 H 0.079 0.921 33 H 0.118 0.882 34 H 0.141 0.859 35 H 0.129 0.871 36 H 0.125 0.875 37 H 0.105 0.895 38 H 0.107 0.893 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.969 -2.220 12.869 13.649 hybrid contribution -0.283 0.653 -0.967 1.200 sum 3.687 -1.568 11.902 12.558 Atomic orbital electron populations 1.22934 0.80899 1.01991 1.01182 1.87786 1.19999 1.26681 1.95024 1.21525 0.92119 0.85370 0.94521 0.92194 1.22697 0.92699 0.99810 0.94744 1.62399 1.15098 1.40187 1.06884 1.19851 0.97866 0.95906 0.80081 1.21076 0.94443 1.45912 0.93420 0.91893 1.24947 0.96649 0.95272 0.97446 1.69927 1.28782 1.46738 1.08156 0.86616 0.84152 0.78658 0.78342 1.20316 1.21402 1.20143 1.22163 0.99173 0.85949 0.99184 1.20239 0.97872 0.90552 1.02946 1.29294 0.93490 0.93860 0.92713 1.81144 1.10352 1.11601 1.10793 1.22424 0.98381 0.99665 0.97076 1.22834 1.00061 0.94702 1.02349 1.22901 1.02799 1.04675 0.91293 0.95851 0.90983 0.90105 0.94453 0.90080 0.97807 0.95147 0.92802 0.88864 0.92081 0.88227 0.85945 0.87073 0.87542 0.89473 0.89308 0.89033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.42 101.05 1.05 1.42 16 2 O -0.38 -5.66 8.70 -35.23 -0.31 -5.97 16 3 C 0.12 1.66 2.54 -26.73 -0.07 1.59 16 4 H 0.06 0.79 5.95 -51.93 -0.31 0.48 16 5 C 0.03 0.44 4.39 -3.82 -0.02 0.42 16 6 N -0.52 -9.31 2.93 -236.07 -0.69 -10.00 16 7 C 0.19 4.22 4.54 -4.97 -0.02 4.19 16 8 C -0.51 -12.92 8.39 -34.44 -0.29 -13.21 16 9 H 0.06 1.58 7.38 -52.49 -0.39 1.20 16 10 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 11 N -0.90 -24.96 13.29 55.43 0.74 -24.23 16 12 Si 0.89 20.70 29.54 -169.99 -5.02 15.68 16 13 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 14 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 15 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 16 C 0.07 1.04 4.23 -3.83 -0.02 1.02 16 17 C -0.07 -1.07 5.05 -29.52 -0.15 -1.22 16 18 C 0.22 3.54 15.43 -20.76 -0.32 3.22 16 19 N -0.46 -8.25 18.54 42.15 0.78 -7.47 16 20 C -0.16 -1.82 5.70 -90.62 -0.52 -2.34 16 21 C -0.16 -1.83 9.88 -26.69 -0.26 -2.09 16 22 C -0.18 -1.88 10.19 -26.69 -0.27 -2.16 16 23 H 0.02 0.29 8.08 -51.93 -0.42 -0.13 16 24 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.08 1.29 5.68 -51.93 -0.30 0.99 16 26 H 0.04 0.51 6.05 -51.93 -0.31 0.20 16 27 H 0.08 1.35 7.92 -51.93 -0.41 0.94 16 28 H 0.00 0.10 6.02 -51.93 -0.31 -0.21 16 29 H 0.03 0.76 7.91 -51.93 -0.41 0.35 16 30 H 0.26 7.02 8.31 -40.82 -0.34 6.69 16 31 H 0.09 1.67 6.98 -51.93 -0.36 1.30 16 32 H 0.06 0.85 6.04 -51.93 -0.31 0.54 16 33 H 0.10 1.20 6.33 -51.93 -0.33 0.87 16 34 H 0.12 2.00 6.28 -51.93 -0.33 1.67 16 35 H 0.11 1.16 8.11 -51.93 -0.42 0.74 16 36 H 0.11 1.35 7.06 -51.93 -0.37 0.98 16 37 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 317.22 15.07 4.78 4.78 Total: -1.00 -28.11 317.22 -6.50 -34.61 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -5.81 Total: 0.28 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: -0.98 Total: -7.69 kcal Atomic # 7 Polarization: -42.52 SS G_CDS: 0.83 Total: -41.69 kcal Atomic # 8 Polarization: -5.66 SS G_CDS: -0.31 Total: -5.97 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.11 -6.50 -34.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425420459.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.578 kcal (2) G-P(sol) polarization free energy of solvation -28.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds