Wall clock time and date at job start Sun Mar 29 2020 23:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.48560 * 111.00000 * 2 1 4 4 C 1.54385 * 104.59352 * 200.96371 * 3 2 1 5 5 C 1.54255 * 105.06119 * 23.85098 * 4 3 2 6 6 C 1.48563 * 110.99757 * 244.58338 * 2 1 3 7 7 H 1.08994 * 110.41667 * 40.25825 * 6 2 1 8 8 C 1.50709 * 110.40875 * 277.81582 * 6 2 1 9 9 O 1.21274 * 120.00037 * 344.82896 * 8 6 2 10 10 N 1.34776 * 119.99786 * 164.83040 * 8 6 2 11 11 C 1.46495 * 120.00112 * 179.97438 * 10 8 6 12 12 C 1.53002 * 109.47484 * 178.27653 * 11 10 8 13 13 C 1.50700 * 115.54420 * 65.14318 * 12 11 10 14 14 H 1.07999 * 120.00005 * 265.40181 * 13 12 11 15 15 C 1.37881 * 120.00200 * 85.41014 * 13 12 11 16 16 N 1.31515 * 119.99789 * 353.54874 * 15 13 12 17 17 Si 1.86796 * 120.00241 * 173.55166 * 15 13 12 18 18 H 1.48499 * 109.47073 * 60.00105 * 17 15 13 19 19 H 1.48499 * 109.47145 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47011 * 299.99863 * 17 15 13 21 21 C 1.52992 * 117.49959 * 279.47414 * 12 11 10 22 22 C 1.52997 * 117.49735 * 210.81169 * 12 11 10 23 23 H 1.09006 * 109.47190 * 175.41830 * 1 2 3 24 24 H 1.08996 * 109.47164 * 295.41789 * 1 2 3 25 25 H 1.09000 * 109.47312 * 55.42355 * 1 2 3 26 26 H 1.08998 * 110.41092 * 82.18116 * 3 2 1 27 27 H 1.09003 * 110.40971 * 319.73412 * 3 2 1 28 28 H 1.08998 * 110.31838 * 264.95342 * 4 3 2 29 29 H 1.09002 * 110.32230 * 142.74900 * 4 3 2 30 30 H 1.09005 * 110.32266 * 241.10325 * 5 4 3 31 31 H 1.09003 * 110.32423 * 118.89726 * 5 4 3 32 32 H 0.97003 * 119.99804 * 359.97438 * 10 8 6 33 33 H 1.09004 * 109.47005 * 298.28211 * 11 10 8 34 34 H 1.09001 * 109.46904 * 58.27737 * 11 10 8 35 35 H 0.96999 * 119.99995 * 185.06800 * 16 15 13 36 36 H 1.09001 * 117.50117 * 0.02562 * 21 12 11 37 37 H 1.08999 * 117.50100 * 145.01814 * 21 12 11 38 38 H 1.09010 * 117.49406 * 214.97840 * 22 12 11 39 39 H 1.08998 * 117.50340 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4433 1.2501 -0.5345 5 6 3.4432 -0.0539 -1.3586 6 6 2.0013 -0.5953 -1.2527 7 1 1.4098 -0.2713 -2.1090 8 6 2.0103 -2.0993 -1.1575 9 8 1.8829 -2.6394 -0.0791 10 7 2.1600 -2.8442 -2.2707 11 6 2.1694 -4.3061 -2.1781 12 6 2.3092 -4.9051 -3.5790 13 6 3.6114 -4.6185 -4.2813 14 1 3.6862 -3.7816 -4.9598 15 6 4.7074 -5.4247 -4.0577 16 7 4.6559 -6.3644 -3.1391 17 14 6.2653 -5.1822 -5.0594 18 1 6.7822 -3.8066 -4.8454 19 1 7.2891 -6.1678 -4.6287 20 1 5.9631 -5.3789 -6.5000 21 6 1.0470 -4.9926 -4.4391 22 6 1.6520 -6.2627 -3.8357 23 1 -0.3634 -1.0244 -0.0821 24 1 -0.3633 0.4411 0.9282 25 1 -0.3634 0.5832 -0.8461 26 1 2.0079 1.7916 1.0120 27 1 1.4098 2.0212 -0.6603 28 1 4.1483 1.1748 0.2933 29 1 3.6936 2.0996 -1.1700 30 1 4.1483 -0.7693 -0.9352 31 1 3.6936 0.1555 -2.3986 32 1 2.2616 -2.4121 -3.1332 33 1 3.0089 -4.6258 -1.5607 34 1 1.2370 -4.6476 -1.7284 35 1 5.4488 -6.8827 -2.9304 36 1 0.1170 -4.6231 -4.0072 37 1 1.1584 -4.8433 -5.5131 38 1 2.1613 -6.9484 -4.5130 39 1 1.1203 -6.7293 -3.0065 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000435231660.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:08:41 Heat of formation + Delta-G solvation = -9.871090 kcal Electronic energy + Delta-G solvation = -19073.120266 eV Core-core repulsion = 16209.244825 eV Total energy + Delta-G solvation = -2863.875441 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.77115 -37.76046 -36.48345 -33.23827 -32.13676 -31.96799 -29.52441 -26.25129 -25.63333 -25.08272 -21.92508 -21.15351 -20.95065 -19.57367 -19.11573 -17.00632 -16.25616 -15.79375 -15.24706 -14.72678 -14.39258 -14.26447 -14.04025 -13.77090 -13.44100 -13.08499 -12.59007 -12.32850 -11.95680 -11.83266 -11.61355 -11.43591 -11.35611 -11.04097 -11.00400 -10.90763 -10.62577 -10.55089 -10.27498 -9.63985 -9.18603 -8.97041 -8.50292 -8.44460 -8.23193 -8.03553 -6.08075 -4.17030 3.25768 3.26388 3.32544 3.33329 3.61024 4.29000 4.35320 4.64588 4.71949 4.95141 5.16117 5.19687 5.26539 5.37104 5.39365 5.46270 5.52835 5.65885 5.78733 5.86235 5.93710 6.03771 6.08238 6.19374 6.33543 6.47133 6.58132 6.68494 6.75656 6.92021 6.98137 7.09274 7.33335 7.44451 7.49546 7.80698 8.33427 8.37991 8.83378 8.98951 9.49716 10.99823 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.023795 B = 0.006050 C = 0.005233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.424146 B = 4626.797377 C = 5349.861011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.490 5.490 3 C 0.032 3.968 4 C -0.122 4.122 5 C -0.113 4.113 6 C 0.044 3.956 7 H 0.069 0.931 8 C 0.512 3.488 9 O -0.536 6.536 10 N -0.705 5.705 11 C 0.166 3.834 12 C 0.028 3.972 13 C -0.501 4.501 14 H 0.059 0.941 15 C 0.074 3.926 16 N -0.874 5.874 17 Si 0.890 3.110 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.276 1.276 21 C -0.211 4.211 22 C -0.148 4.148 23 H 0.072 0.928 24 H 0.070 0.930 25 H 0.025 0.975 26 H 0.082 0.918 27 H 0.043 0.957 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.398 0.602 33 H 0.071 0.929 34 H 0.035 0.965 35 H 0.263 0.737 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.930 13.401 1.675 14.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.214 5.214 3 C -0.096 4.096 4 C -0.160 4.160 5 C -0.151 4.151 6 C -0.068 4.068 7 H 0.087 0.913 8 C 0.296 3.704 9 O -0.412 6.412 10 N -0.355 5.355 11 C 0.043 3.957 12 C 0.027 3.973 13 C -0.539 4.539 14 H 0.077 0.923 15 C -0.130 4.130 16 N -0.510 5.510 17 Si 0.718 3.282 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.248 4.248 22 C -0.186 4.186 23 H 0.091 0.909 24 H 0.089 0.911 25 H 0.044 0.956 26 H 0.101 0.899 27 H 0.061 0.939 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.231 0.769 33 H 0.090 0.910 34 H 0.054 0.946 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.776 12.471 2.989 13.685 hybrid contribution 0.608 0.623 -1.661 1.875 sum -4.169 13.094 1.329 13.806 Atomic orbital electron populations 1.22509 0.87673 1.02439 1.00599 1.65070 1.08308 1.14253 1.33766 1.23158 0.95336 0.89893 1.01229 1.22289 0.96660 0.97272 0.99810 1.22232 0.94730 0.97268 1.00919 1.22659 0.97642 0.93793 0.92725 0.91316 1.20099 0.77577 0.88127 0.84625 1.90655 1.49324 1.73414 1.27822 1.45974 1.72247 1.08256 1.09018 1.20957 0.99414 0.77144 0.98234 1.19036 0.91171 0.96242 0.90822 1.20292 0.93908 1.13239 1.26451 0.92261 1.24985 0.98559 0.94474 0.94977 1.69965 1.29071 1.21671 1.30296 0.86697 0.82856 0.77954 0.80708 1.20241 1.21261 1.20197 1.23019 0.97546 1.05219 0.99061 1.22490 1.03100 0.91384 1.01642 0.90947 0.91134 0.95628 0.89913 0.93887 0.90741 0.91149 0.90146 0.90342 0.76853 0.91037 0.94650 0.92750 0.91705 0.90382 0.89828 0.91678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.44 60.06 0.57 0.78 16 2 N -0.49 -7.12 4.92 -231.71 -1.14 -8.26 16 3 C 0.03 0.35 6.49 -2.18 -0.01 0.34 16 4 C -0.12 -1.31 7.00 -25.35 -0.18 -1.49 16 5 C -0.11 -1.49 6.54 -25.35 -0.17 -1.66 16 6 C 0.04 0.65 2.68 -67.22 -0.18 0.47 16 7 H 0.07 0.89 7.97 -51.93 -0.41 0.48 16 8 C 0.51 9.89 6.72 -10.98 -0.07 9.82 16 9 O -0.54 -12.50 16.56 5.56 0.09 -12.41 16 10 N -0.71 -13.84 5.47 -60.29 -0.33 -14.17 16 11 C 0.17 3.80 5.50 -4.04 -0.02 3.78 16 12 C 0.03 0.66 1.38 -155.67 -0.21 0.44 16 13 C -0.50 -12.81 8.63 -34.44 -0.30 -13.11 16 14 H 0.06 1.48 7.82 -52.49 -0.41 1.07 16 15 C 0.07 1.97 5.39 -17.82 -0.10 1.87 16 16 N -0.87 -24.30 12.91 55.43 0.72 -23.59 16 17 Si 0.89 20.45 29.55 -169.99 -5.02 15.42 16 18 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 21 C -0.21 -4.38 9.96 -26.70 -0.27 -4.64 16 22 C -0.15 -3.39 9.42 -26.69 -0.25 -3.64 16 23 H 0.07 1.05 7.96 -51.93 -0.41 0.63 16 24 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.03 0.28 7.97 -51.93 -0.41 -0.14 16 26 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.04 0.42 7.90 -51.93 -0.41 0.00 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.08 1.24 7.85 -51.93 -0.41 0.83 16 31 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.40 7.09 8.37 -40.82 -0.34 6.75 16 33 H 0.07 1.89 8.14 -51.93 -0.42 1.47 16 34 H 0.04 0.81 8.09 -51.93 -0.42 0.39 16 35 H 0.26 7.05 8.32 -40.82 -0.34 6.71 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 38 H 0.08 2.03 8.14 -51.92 -0.42 1.61 16 39 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 323.55 15.07 4.88 4.88 Total: -1.00 -30.01 323.55 -8.59 -38.60 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -6.59 Total: 6.57 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: -1.19 Total: -7.05 kcal Atomic # 7 Polarization: -45.26 SS G_CDS: -0.75 Total: -46.02 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: 0.09 Total: -12.41 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.01 -8.59 -38.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435231660.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.733 kcal (2) G-P(sol) polarization free energy of solvation -30.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds