Wall clock time and date at job start Sun Mar 29 2020 23:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.48560 * 111.00000 * 2 1 4 4 C 1.54385 * 104.59352 * 200.96371 * 3 2 1 5 5 C 1.54255 * 105.06119 * 23.85098 * 4 3 2 6 6 C 1.48563 * 110.99757 * 244.58338 * 2 1 3 7 7 H 1.08994 * 110.41667 * 40.25825 * 6 2 1 8 8 C 1.50709 * 110.40875 * 277.81582 * 6 2 1 9 9 O 1.21274 * 120.00037 * 344.82896 * 8 6 2 10 10 N 1.34776 * 119.99786 * 164.83040 * 8 6 2 11 11 C 1.46495 * 120.00112 * 179.97438 * 10 8 6 12 12 C 1.53002 * 109.47484 * 178.27653 * 11 10 8 13 13 C 1.50700 * 115.54420 * 65.14318 * 12 11 10 14 14 H 1.07999 * 120.00005 * 265.40181 * 13 12 11 15 15 C 1.37881 * 120.00200 * 85.41014 * 13 12 11 16 16 N 1.31515 * 119.99789 * 353.54874 * 15 13 12 17 17 Si 1.86796 * 120.00241 * 173.55166 * 15 13 12 18 18 H 1.48499 * 109.47073 * 60.00105 * 17 15 13 19 19 H 1.48499 * 109.47145 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47011 * 299.99863 * 17 15 13 21 21 C 1.52992 * 117.49959 * 279.47414 * 12 11 10 22 22 C 1.52997 * 117.49735 * 210.81169 * 12 11 10 23 23 H 1.09006 * 109.47190 * 175.41830 * 1 2 3 24 24 H 1.08996 * 109.47164 * 295.41789 * 1 2 3 25 25 H 1.09000 * 109.47312 * 55.42355 * 1 2 3 26 26 H 1.08998 * 110.41092 * 82.18116 * 3 2 1 27 27 H 1.09003 * 110.40971 * 319.73412 * 3 2 1 28 28 H 1.08998 * 110.31838 * 264.95342 * 4 3 2 29 29 H 1.09002 * 110.32230 * 142.74900 * 4 3 2 30 30 H 1.09005 * 110.32266 * 241.10325 * 5 4 3 31 31 H 1.09003 * 110.32423 * 118.89726 * 5 4 3 32 32 H 0.97003 * 119.99804 * 359.97438 * 10 8 6 33 33 H 1.09004 * 109.47005 * 298.28211 * 11 10 8 34 34 H 1.09001 * 109.46904 * 58.27737 * 11 10 8 35 35 H 0.96999 * 119.99995 * 185.06800 * 16 15 13 36 36 H 1.09001 * 117.50117 * 0.02562 * 21 12 11 37 37 H 1.08999 * 117.50100 * 145.01814 * 21 12 11 38 38 H 1.09010 * 117.49406 * 214.97840 * 22 12 11 39 39 H 1.08998 * 117.50340 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4433 1.2501 -0.5345 5 6 3.4432 -0.0539 -1.3586 6 6 2.0013 -0.5953 -1.2527 7 1 1.4098 -0.2713 -2.1090 8 6 2.0103 -2.0993 -1.1575 9 8 1.8829 -2.6394 -0.0791 10 7 2.1600 -2.8442 -2.2707 11 6 2.1694 -4.3061 -2.1781 12 6 2.3092 -4.9051 -3.5790 13 6 3.6114 -4.6185 -4.2813 14 1 3.6862 -3.7816 -4.9598 15 6 4.7074 -5.4247 -4.0577 16 7 4.6559 -6.3644 -3.1391 17 14 6.2653 -5.1822 -5.0594 18 1 6.7822 -3.8066 -4.8454 19 1 7.2891 -6.1678 -4.6287 20 1 5.9631 -5.3789 -6.5000 21 6 1.0470 -4.9926 -4.4391 22 6 1.6520 -6.2627 -3.8357 23 1 -0.3634 -1.0244 -0.0821 24 1 -0.3633 0.4411 0.9282 25 1 -0.3634 0.5832 -0.8461 26 1 2.0079 1.7916 1.0120 27 1 1.4098 2.0212 -0.6603 28 1 4.1483 1.1748 0.2933 29 1 3.6936 2.0996 -1.1700 30 1 4.1483 -0.7693 -0.9352 31 1 3.6936 0.1555 -2.3986 32 1 2.2616 -2.4121 -3.1332 33 1 3.0089 -4.6258 -1.5607 34 1 1.2370 -4.6476 -1.7284 35 1 5.4488 -6.8827 -2.9304 36 1 0.1170 -4.6231 -4.0072 37 1 1.1584 -4.8433 -5.5131 38 1 2.1613 -6.9484 -4.5130 39 1 1.1203 -6.7293 -3.0065 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000435231660.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:08:40 Heat of formation + Delta-G solvation = -30.522132 kcal Electronic energy + Delta-G solvation = -19074.015762 eV Core-core repulsion = 16209.244825 eV Total energy + Delta-G solvation = -2864.770938 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.11433 -39.16919 -38.19063 -34.92852 -33.96968 -33.11751 -30.68807 -28.00032 -27.05472 -26.53019 -23.26001 -22.86598 -21.85206 -21.32405 -20.69356 -18.50347 -17.91239 -17.04155 -16.67259 -16.60261 -15.95280 -15.77366 -15.19298 -15.06582 -14.72705 -14.64107 -14.13768 -13.66471 -13.48777 -13.30295 -12.94061 -12.90592 -12.78506 -12.54452 -12.39061 -12.33400 -12.05273 -12.01632 -11.56657 -11.46583 -10.87010 -10.76497 -10.45408 -10.05350 -9.81035 -9.42129 -8.09310 -6.22953 1.44097 1.45501 1.52148 1.74951 2.24141 2.43379 3.15180 3.19015 3.48072 3.64727 3.69076 3.98523 4.12972 4.24389 4.29363 4.43250 4.48442 4.54236 4.59054 4.64490 4.72161 4.73479 4.90831 4.96728 4.98249 5.03235 5.04228 5.13245 5.25438 5.26141 5.57772 5.59729 5.67783 5.77856 5.80865 6.04701 6.36520 6.80926 6.86399 7.44207 7.47125 8.98302 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.023795 B = 0.006050 C = 0.005233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.424146 B = 4626.797377 C = 5349.861011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.524 5.524 3 C 0.034 3.966 4 C -0.117 4.117 5 C -0.115 4.115 6 C 0.051 3.949 7 H 0.096 0.904 8 C 0.508 3.492 9 O -0.583 6.583 10 N -0.699 5.699 11 C 0.182 3.818 12 C 0.005 3.995 13 C -0.504 4.504 14 H 0.066 0.934 15 C 0.024 3.976 16 N -0.910 5.910 17 Si 0.950 3.050 18 H -0.269 1.269 19 H -0.293 1.293 20 H -0.269 1.269 21 C -0.175 4.175 22 C -0.161 4.161 23 H 0.044 0.956 24 H 0.083 0.917 25 H 0.048 0.952 26 H 0.091 0.909 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.100 0.900 30 H 0.048 0.952 31 H 0.100 0.900 32 H 0.409 0.591 33 H 0.025 0.975 34 H 0.031 0.969 35 H 0.259 0.741 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.064 0.936 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.390 16.195 0.253 17.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.249 5.249 3 C -0.093 4.093 4 C -0.154 4.154 5 C -0.153 4.153 6 C -0.061 4.061 7 H 0.114 0.886 8 C 0.295 3.705 9 O -0.463 6.463 10 N -0.349 5.349 11 C 0.058 3.942 12 C 0.004 3.996 13 C -0.542 4.542 14 H 0.084 0.916 15 C -0.177 4.177 16 N -0.548 5.548 17 Si 0.776 3.224 18 H -0.194 1.194 19 H -0.219 1.219 20 H -0.194 1.194 21 C -0.212 4.212 22 C -0.199 4.199 23 H 0.063 0.937 24 H 0.102 0.898 25 H 0.067 0.933 26 H 0.109 0.891 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.119 0.881 30 H 0.067 0.933 31 H 0.118 0.882 32 H 0.245 0.755 33 H 0.044 0.956 34 H 0.049 0.951 35 H 0.068 0.932 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.082 0.918 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.244 15.306 1.534 16.252 hybrid contribution 0.711 -0.249 -1.175 1.396 sum -4.533 15.058 0.359 15.729 Atomic orbital electron populations 1.22487 0.86884 1.01251 1.02347 1.65006 1.09420 1.16653 1.33787 1.23242 0.95401 0.88203 1.02445 1.22312 0.96592 0.96772 0.99767 1.22282 0.92732 0.97765 1.02543 1.22619 0.99354 0.89891 0.94201 0.88600 1.21027 0.75741 0.90274 0.83486 1.90625 1.51292 1.74828 1.29525 1.45860 1.72195 1.06913 1.09951 1.20502 0.97162 0.79281 0.97264 1.19067 0.92080 0.97019 0.91398 1.20633 0.94668 1.12938 1.25961 0.91568 1.25732 1.01651 0.94460 0.95841 1.70107 1.29601 1.22947 1.32104 0.85735 0.79296 0.77882 0.79458 1.19387 1.21910 1.19388 1.23006 0.96852 1.02158 0.99190 1.22431 1.03895 0.91602 1.01978 0.93691 0.89793 0.93313 0.89070 0.91559 0.91210 0.88128 0.93320 0.88182 0.75535 0.95627 0.95072 0.93243 0.89395 0.89350 0.91755 0.91330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 9.44 127.69 1.21 1.64 16 2 N -0.52 -14.28 4.92 -887.00 -4.36 -18.64 16 3 C 0.03 0.64 6.49 86.45 0.56 1.20 16 4 C -0.12 -2.15 7.00 31.49 0.22 -1.93 16 5 C -0.11 -2.81 6.54 31.49 0.21 -2.60 16 6 C 0.05 1.43 2.68 44.32 0.12 1.55 16 7 H 0.10 2.17 7.97 -2.39 -0.02 2.15 16 8 C 0.51 19.72 6.72 87.66 0.59 20.31 16 9 O -0.58 -28.14 16.56 -3.01 -0.05 -28.19 16 10 N -0.70 -27.36 5.47 -463.06 -2.54 -29.89 16 11 C 0.18 8.57 5.50 86.38 0.48 9.05 16 12 C 0.01 0.24 1.38 -52.93 -0.07 0.17 16 13 C -0.50 -25.58 8.63 25.60 0.22 -25.36 16 14 H 0.07 3.20 7.82 -2.91 -0.02 3.17 16 15 C 0.02 1.26 5.39 84.66 0.46 1.72 16 16 N -0.91 -51.99 12.91 21.45 0.28 -51.71 16 17 Si 0.95 41.94 29.55 68.60 2.03 43.97 16 18 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 19 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 20 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 21 C -0.17 -6.93 9.96 30.62 0.30 -6.62 16 22 C -0.16 -7.39 9.42 30.62 0.29 -7.10 16 23 H 0.04 1.28 7.96 -2.38 -0.02 1.26 16 24 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.05 0.90 7.97 -2.39 -0.02 0.88 16 26 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.07 0.96 7.90 -2.39 -0.02 0.95 16 28 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.05 1.49 7.85 -2.38 -0.02 1.47 16 31 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.41 14.04 8.37 -92.71 -0.78 13.26 16 33 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.03 1.46 8.09 -2.39 -0.02 1.44 16 35 H 0.26 14.32 8.32 -92.71 -0.77 13.55 16 36 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 37 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 38 H 0.06 3.17 8.14 -2.38 -0.02 3.15 16 39 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 Total: -1.00 -66.61 323.55 0.17 -66.44 By element: Atomic # 1 Polarization: 25.77 SS G_CDS: 0.24 Total: 26.01 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: 4.57 Total: -7.98 kcal Atomic # 7 Polarization: -93.63 SS G_CDS: -6.62 Total: -100.25 kcal Atomic # 8 Polarization: -28.14 SS G_CDS: -0.05 Total: -28.19 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -66.61 0.17 -66.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435231660.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.918 kcal (2) G-P(sol) polarization free energy of solvation -66.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds