Wall clock time and date at job start Sun Mar 29 2020 23:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47229 * 2 1 4 4 N 1.46503 * 109.47490 * 173.75417 * 3 2 1 5 5 C 1.36937 * 119.99647 * 263.39510 * 4 3 2 6 6 H 1.08007 * 119.99671 * 193.97173 * 5 4 3 7 7 C 1.38803 * 120.00436 * 13.97049 * 5 4 3 8 8 N 1.31623 * 120.00017 * 13.81018 * 7 5 4 9 9 Si 1.86803 * 120.00427 * 193.80585 * 7 5 4 10 10 H 1.48500 * 109.46805 * 89.99895 * 9 7 5 11 11 H 1.48493 * 109.47554 * 210.00277 * 9 7 5 12 12 H 1.48501 * 109.46990 * 330.00407 * 9 7 5 13 13 C 1.46496 * 119.99938 * 83.11440 * 4 3 2 14 14 C 1.50699 * 109.46888 * 94.92283 * 13 4 3 15 15 C 1.35355 * 126.91101 * 276.80741 * 14 13 4 16 16 C 1.50699 * 126.75227 * 0.04419 * 15 14 13 17 17 N 1.33772 * 106.49763 * 179.90752 * 15 14 13 18 18 N 1.28637 * 108.88356 * 0.36470 * 17 15 14 19 19 N 1.28710 * 110.18046 * 359.77152 * 18 17 15 20 20 C 1.46500 * 125.87200 * 179.97438 * 19 18 17 21 21 C 1.52993 * 109.47392 * 270.02549 * 20 19 18 22 22 H 1.08999 * 109.47156 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47029 * 300.00239 * 1 2 3 24 24 H 1.09002 * 109.46980 * 59.99980 * 1 2 3 25 25 H 1.09000 * 109.47498 * 239.99916 * 2 1 3 26 26 H 1.09002 * 109.46980 * 120.00019 * 2 1 3 27 27 H 1.09004 * 109.47305 * 53.74957 * 3 2 1 28 28 H 1.09005 * 109.47137 * 293.75375 * 3 2 1 29 29 H 0.97002 * 120.00135 * 179.97438 * 8 7 5 30 30 H 1.08998 * 109.47016 * 214.92061 * 13 4 3 31 31 H 1.09000 * 109.47379 * 334.92703 * 13 4 3 32 32 H 1.09000 * 109.47526 * 94.80081 * 16 15 14 33 33 H 1.09005 * 109.46916 * 214.80409 * 16 15 14 34 34 H 1.08999 * 109.47122 * 334.79940 * 16 15 14 35 35 H 1.09003 * 109.46752 * 30.03054 * 20 19 18 36 36 H 1.09007 * 109.47206 * 150.02119 * 20 19 18 37 37 H 1.08998 * 109.47420 * 299.99552 * 21 20 19 38 38 H 1.09001 * 109.47152 * 60.00033 * 21 20 19 39 39 H 1.09004 * 109.46929 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4973 1.4453 0.1503 5 6 4.0577 1.6256 1.3866 6 1 5.1099 1.8530 1.4746 7 6 3.2737 1.5163 2.5268 8 7 2.0741 0.9799 2.4516 9 14 3.9209 2.1303 4.1680 10 1 3.5440 3.5555 4.3468 11 1 3.3332 1.3214 5.2659 12 1 5.4001 2.0022 4.1959 13 6 4.3548 1.2490 -1.0212 14 6 4.7677 2.5897 -1.5717 15 6 4.0565 3.3774 -2.4119 16 6 2.6921 3.0869 -2.9821 17 7 4.8016 4.4659 -2.6342 18 7 5.9046 4.3558 -1.9814 19 7 5.9264 3.2456 -1.3304 20 6 7.0182 2.7730 -0.4755 21 6 8.0041 1.9557 -1.3125 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.5882 1.9876 0.8288 28 1 1.7709 1.9230 -0.9406 29 1 1.5262 0.9031 3.2484 30 1 5.2423 0.6863 -0.7316 31 1 3.8068 0.6961 -1.7841 32 1 1.9305 3.5558 -2.3591 33 1 2.6292 3.4853 -3.9947 34 1 2.5298 2.0093 -3.0050 35 1 7.5339 3.6283 -0.0389 36 1 6.6122 2.1485 0.3204 37 1 7.4884 1.1004 -1.7491 38 1 8.4101 2.5802 -2.1083 39 1 8.8167 1.6044 -0.6765 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449014183.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:46:08 Heat of formation + Delta-G solvation = 109.571459 kcal Electronic energy + Delta-G solvation = -19767.089751 eV Core-core repulsion = 16940.686478 eV Total energy + Delta-G solvation = -2826.403272 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.61069 -36.46352 -35.14312 -32.83660 -31.91221 -31.06126 -30.04576 -27.61409 -25.66554 -25.40545 -24.03607 -22.07427 -20.60113 -20.35640 -19.47799 -16.82826 -16.58230 -15.83129 -15.09165 -14.46955 -14.03181 -13.71424 -13.57158 -13.26031 -13.07500 -12.93464 -12.52970 -12.27933 -12.11054 -11.77153 -11.48406 -11.45842 -11.29645 -10.99496 -10.94514 -10.79860 -10.47255 -10.24473 -10.10523 -9.95212 -9.84922 -9.34799 -9.32733 -8.47544 -8.25301 -6.95450 -5.81915 -3.27477 2.25617 2.93272 3.15554 3.29532 3.35793 3.38322 4.38652 4.79504 4.99688 5.02710 5.26525 5.31874 5.43810 5.50387 5.59176 5.60224 5.69197 5.86457 6.02553 6.07115 6.19498 6.22206 6.27198 6.35505 6.51848 6.55915 6.58637 6.73557 6.88215 6.92838 7.19769 7.23189 7.28386 7.52250 7.78695 8.02717 8.29831 9.12934 9.16281 9.71806 10.16761 11.16911 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.016639 B = 0.009462 C = 0.006980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.410793 B = 2958.399114 C = 4010.326241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.119 4.119 3 C 0.167 3.833 4 N -0.584 5.584 5 C -0.255 4.255 6 H 0.067 0.933 7 C 0.004 3.996 8 N -0.893 5.893 9 Si 0.902 3.098 10 H -0.289 1.289 11 H -0.290 1.290 12 H -0.282 1.282 13 C 0.212 3.788 14 C 0.000 4.000 15 C -0.037 4.037 16 C -0.056 4.056 17 N -0.280 5.280 18 N -0.113 5.113 19 N -0.284 5.284 20 C 0.108 3.892 21 C -0.165 4.165 22 H 0.030 0.970 23 H 0.054 0.946 24 H 0.030 0.970 25 H 0.013 0.987 26 H 0.092 0.908 27 H 0.095 0.905 28 H 0.008 0.992 29 H 0.252 0.748 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.098 0.902 36 H 0.113 0.887 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.240 -1.820 -6.050 7.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.158 4.158 3 C 0.043 3.957 4 N -0.303 5.303 5 C -0.384 4.384 6 H 0.084 0.916 7 C -0.194 4.194 8 N -0.539 5.539 9 Si 0.733 3.267 10 H -0.216 1.216 11 H -0.216 1.216 12 H -0.207 1.207 13 C 0.081 3.919 14 C -0.136 4.136 15 C -0.175 4.175 16 C -0.115 4.115 17 N -0.147 5.147 18 N -0.092 5.092 19 N -0.078 5.078 20 C -0.014 4.014 21 C -0.223 4.223 22 H 0.049 0.951 23 H 0.073 0.927 24 H 0.049 0.951 25 H 0.031 0.969 26 H 0.110 0.890 27 H 0.113 0.887 28 H 0.026 0.974 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.116 0.884 36 H 0.131 0.869 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.915 -0.549 -6.186 7.920 hybrid contribution -0.100 -0.548 1.378 1.486 sum 4.816 -1.097 -4.808 6.893 Atomic orbital electron populations 1.21584 0.98303 0.99117 1.00251 1.22011 0.93242 1.00253 1.00301 1.21026 0.81862 0.94807 0.98019 1.44109 1.01557 1.82818 1.01841 1.19157 0.94252 1.42075 0.82918 0.91571 1.24798 0.97078 0.99963 0.97575 1.70129 1.10361 1.45837 1.27545 0.86298 0.78042 0.78561 0.83835 1.21606 1.21633 1.20745 1.19228 0.95248 0.86734 0.90661 1.23862 0.87085 1.02109 1.00497 1.21610 0.99633 0.93162 1.03130 1.19977 0.89920 1.01761 0.99805 1.74861 0.99441 1.21509 1.18892 1.78076 1.17616 1.04243 1.09219 1.47140 1.14466 1.13762 1.32414 1.22066 0.86192 1.00497 0.92609 1.22129 0.99012 1.00404 1.00780 0.95057 0.92650 0.95094 0.96873 0.88985 0.88713 0.97365 0.93687 0.92766 0.91109 0.91103 0.91759 0.91053 0.88402 0.86929 0.91618 0.91856 0.90150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 9.91 37.16 0.37 -2.10 16 2 C -0.12 -2.48 5.57 -26.73 -0.15 -2.63 16 3 C 0.17 3.71 4.84 -4.04 -0.02 3.70 16 4 N -0.58 -13.15 2.53 -174.61 -0.44 -13.59 16 5 C -0.26 -6.30 9.74 -15.06 -0.15 -6.45 16 6 H 0.07 1.58 6.05 -52.48 -0.32 1.26 16 7 C 0.00 0.09 5.11 -17.43 -0.09 0.00 16 8 N -0.89 -23.11 8.21 55.49 0.46 -22.65 16 9 Si 0.90 20.66 29.58 -169.99 -5.03 15.63 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 13 C 0.21 4.02 5.62 -5.20 -0.03 3.99 16 14 C 0.00 0.01 6.55 -82.08 -0.54 -0.53 16 15 C -0.04 -0.72 7.25 -82.78 -0.60 -1.32 16 16 C -0.06 -0.90 9.07 36.01 0.33 -0.57 16 17 N -0.28 -5.89 12.41 33.29 0.41 -5.47 16 18 N -0.11 -2.31 13.16 60.35 0.79 -1.51 16 19 N -0.28 -5.24 3.34 -57.04 -0.19 -5.43 16 20 C 0.11 1.56 6.70 -4.05 -0.03 1.53 16 21 C -0.16 -1.88 10.24 37.15 0.38 -1.50 16 22 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 24 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.09 2.23 6.50 -51.93 -0.34 1.89 16 27 H 0.09 2.42 5.83 -51.93 -0.30 2.12 16 28 H 0.01 0.17 5.93 -51.93 -0.31 -0.14 16 29 H 0.25 6.48 8.31 -40.82 -0.34 6.14 16 30 H 0.05 0.97 7.42 -51.93 -0.39 0.59 16 31 H 0.07 1.24 7.36 -51.93 -0.38 0.86 16 32 H 0.07 1.16 7.71 -51.93 -0.40 0.76 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.07 1.05 7.01 -51.93 -0.36 0.69 16 35 H 0.10 1.29 8.14 -51.93 -0.42 0.86 16 36 H 0.11 1.72 5.74 -51.92 -0.30 1.43 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 312.28 15.07 4.71 4.71 Total: -1.00 -28.45 312.28 -5.85 -34.30 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -6.04 Total: -0.10 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: -0.52 Total: -5.87 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: 1.03 Total: -48.66 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.03 Total: 15.63 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.45 -5.85 -34.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449014183.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.874 kcal (2) G-P(sol) polarization free energy of solvation -28.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds