Wall clock time and date at job start Sun Mar 29 2020 23:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46900 * 111.00067 * 2 1 4 4 C 1.46898 * 111.00024 * 123.95561 * 2 1 3 5 5 C 1.50702 * 109.47246 * 66.04795 * 4 2 1 6 6 C 1.32989 * 120.00346 * 124.99893 * 5 4 2 7 7 C 1.47105 * 120.00319 * 180.02562 * 6 5 4 8 8 O 1.21614 * 119.99376 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00173 * 179.97438 * 7 6 5 10 10 C 1.46499 * 119.99866 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.46881 * 178.27895 * 10 9 7 12 12 C 1.50699 * 115.55137 * 65.14058 * 11 10 9 13 13 H 1.07997 * 120.00271 * 265.40275 * 12 11 10 14 14 C 1.37883 * 119.99835 * 85.40105 * 12 11 10 15 15 N 1.31518 * 120.00008 * 353.56342 * 14 12 11 16 16 Si 1.86799 * 119.99978 * 173.55285 * 14 12 11 17 17 H 1.48503 * 109.46660 * 60.00348 * 16 14 12 18 18 H 1.48492 * 109.47240 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47494 * 300.00684 * 16 14 12 20 20 C 1.52994 * 117.49886 * 279.46696 * 11 10 9 21 21 C 1.53008 * 117.49705 * 210.80902 * 11 10 9 22 22 H 1.09005 * 109.46697 * 296.04268 * 1 2 3 23 23 H 1.08998 * 109.47158 * 56.04243 * 1 2 3 24 24 H 1.08998 * 109.47091 * 176.04313 * 1 2 3 25 25 H 1.09001 * 109.47511 * 183.95308 * 3 2 1 26 26 H 1.08997 * 109.47153 * 303.95834 * 3 2 1 27 27 H 1.09007 * 109.46626 * 63.95535 * 3 2 1 28 28 H 1.08993 * 109.47356 * 306.04735 * 4 2 1 29 29 H 1.09002 * 109.47498 * 186.04226 * 4 2 1 30 30 H 1.08009 * 119.99660 * 304.99875 * 5 4 2 31 31 H 1.08002 * 119.99951 * 0.27214 * 6 5 4 32 32 H 0.96999 * 119.99663 * 0.02562 * 9 7 6 33 33 H 1.09000 * 109.47065 * 298.27593 * 10 9 7 34 34 H 1.08998 * 109.47372 * 58.27803 * 10 9 7 35 35 H 0.96997 * 119.99595 * 185.06293 * 15 14 12 36 36 H 1.09003 * 117.49802 * 0.02562 * 20 11 10 37 37 H 1.09005 * 117.49704 * 145.02071 * 20 11 10 38 38 H 1.08994 * 117.49905 * 214.98386 * 21 11 10 39 39 H 1.09004 * 117.49490 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 1.6370 -2.2205 0.9728 6 6 2.5904 -3.1473 0.9979 7 6 2.2405 -4.5670 0.8365 8 8 1.0793 -4.8931 0.6805 9 7 3.2068 -5.5063 0.8615 10 6 2.8582 -6.9201 0.7013 11 6 4.1333 -7.7655 0.7246 12 6 4.8894 -7.7657 2.0282 13 1 5.7054 -7.0746 2.1792 14 6 4.5392 -8.6481 3.0281 15 7 3.4690 -9.4010 2.8956 16 14 5.5851 -8.7746 4.5706 17 1 5.6224 -7.4560 5.2527 18 1 4.9995 -9.7884 5.4840 19 1 6.9651 -9.1800 4.2013 20 6 4.9506 -7.8466 -0.5662 21 6 4.1398 -9.0568 -0.0961 22 1 -0.3633 0.4512 0.9234 23 1 -0.3633 0.5740 -0.8524 24 1 -0.3633 -1.0252 -0.0709 25 1 3.0828 1.3433 -0.0708 26 1 1.5898 1.9163 -0.8524 27 1 1.7044 1.8723 0.9234 28 1 1.5612 -0.3874 2.0627 29 1 3.0798 -0.6612 1.1756 30 1 0.6057 -2.5101 0.8342 31 1 3.6211 -2.8581 1.1409 32 1 4.1328 -5.2461 0.9863 33 1 2.2036 -7.2276 1.5168 34 1 2.3452 -7.0624 -0.2498 35 1 3.1811 -9.9677 3.6283 36 1 4.5802 -7.2974 -1.4318 37 1 6.0353 -7.9005 -0.4725 38 1 4.6912 -9.9063 0.3067 39 1 3.2355 -9.3043 -0.6521 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493527434.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:23:29 Heat of formation + Delta-G solvation = 4.789941 kcal Electronic energy + Delta-G solvation = -18057.040882 eV Core-core repulsion = 15193.801191 eV Total energy + Delta-G solvation = -2863.239691 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.06462 -37.78667 -36.65252 -33.22795 -33.16804 -31.96358 -27.96124 -27.77206 -26.10399 -25.13098 -22.68707 -21.21790 -20.53340 -19.52632 -18.88553 -17.08426 -16.10235 -15.58125 -15.49018 -15.00188 -14.71457 -14.68764 -14.31789 -13.81401 -13.24726 -12.89584 -12.71449 -12.52676 -12.47325 -11.97790 -11.77415 -11.76059 -11.57403 -11.21272 -10.99448 -10.91971 -10.54570 -10.25940 -9.66072 -9.38926 -9.32665 -8.96235 -8.57431 -8.49221 -8.24785 -8.03187 -6.07303 -4.16183 1.63246 3.27092 3.33229 3.34356 3.69746 3.89225 4.06729 4.35714 4.79113 4.88865 5.03001 5.11492 5.20540 5.24331 5.29641 5.36077 5.39804 5.51850 5.59548 5.65862 5.75465 6.04650 6.35206 6.46761 6.49914 6.56175 6.59371 6.71066 6.72997 6.77051 6.92442 7.10628 7.32587 7.44875 7.50293 7.81652 8.34402 8.36813 8.84237 8.94439 9.50555 11.00548 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.027530 B = 0.004107 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.832661 B = 6816.127863 C = 7225.626042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.544 5.544 3 C 0.024 3.976 4 C 0.078 3.922 5 C -0.079 4.079 6 C -0.188 4.188 7 C 0.533 3.467 8 O -0.564 6.564 9 N -0.696 5.696 10 C 0.162 3.838 11 C 0.028 3.972 12 C -0.502 4.502 13 H 0.060 0.940 14 C 0.074 3.926 15 N -0.875 5.875 16 Si 0.891 3.109 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.276 1.276 20 C -0.210 4.210 21 C -0.148 4.148 22 H 0.026 0.974 23 H 0.068 0.932 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.025 0.975 28 H 0.050 0.950 29 H 0.084 0.916 30 H 0.125 0.875 31 H 0.124 0.876 32 H 0.401 0.599 33 H 0.072 0.928 34 H 0.037 0.963 35 H 0.262 0.738 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.410 16.573 -3.671 17.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.268 5.268 3 C -0.124 4.124 4 C -0.049 4.049 5 C -0.099 4.099 6 C -0.210 4.210 7 C 0.320 3.680 8 O -0.445 6.445 9 N -0.343 5.343 10 C 0.039 3.961 11 C 0.027 3.973 12 C -0.539 4.539 13 H 0.078 0.922 14 C -0.130 4.130 15 N -0.510 5.510 16 Si 0.719 3.281 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.248 4.248 21 C -0.186 4.186 22 H 0.045 0.955 23 H 0.087 0.913 24 H 0.094 0.906 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.043 0.957 28 H 0.068 0.932 29 H 0.103 0.897 30 H 0.143 0.857 31 H 0.141 0.859 32 H 0.235 0.765 33 H 0.091 0.909 34 H 0.056 0.944 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.137 15.871 -4.139 16.541 hybrid contribution 0.714 0.305 1.733 1.899 sum -1.423 16.176 -2.406 16.416 Atomic orbital electron populations 1.22485 0.87066 1.03006 1.00399 1.62010 1.08405 1.13673 1.42720 1.22403 1.00941 0.88573 1.00505 1.21292 1.00668 0.91149 0.91819 1.23404 1.00154 0.93077 0.93288 1.22738 1.00063 0.93120 1.05102 1.18524 0.85611 0.86205 0.77672 1.90731 1.19386 1.83002 1.51396 1.45897 1.09988 1.07645 1.70813 1.20999 0.97644 0.78056 0.99369 1.19027 0.92759 0.95262 0.90266 1.20312 1.16514 1.19309 0.97810 0.92215 1.24992 0.95017 0.94774 0.98249 1.69969 1.22920 1.26262 1.31883 0.86684 0.80732 0.77878 0.82836 1.20247 1.21281 1.20188 1.23025 0.97938 1.04531 0.99286 1.22492 0.99877 0.92799 1.03461 0.95534 0.91332 0.90645 0.91185 0.91234 0.95651 0.93192 0.89748 0.85700 0.85856 0.76507 0.90947 0.94441 0.92777 0.91608 0.90351 0.89830 0.91666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.37 60.07 0.56 0.73 16 2 N -0.54 -5.60 5.01 -252.72 -1.27 -6.87 16 3 C 0.02 0.19 9.57 60.06 0.57 0.76 16 4 C 0.08 0.81 5.41 -4.98 -0.03 0.78 16 5 C -0.08 -1.05 8.76 -36.13 -0.32 -1.37 16 6 C -0.19 -2.78 9.63 -37.81 -0.36 -3.14 16 7 C 0.53 10.40 7.76 -12.66 -0.10 10.30 16 8 O -0.56 -13.02 16.22 5.27 0.09 -12.93 16 9 N -0.70 -13.93 5.47 -61.49 -0.34 -14.27 16 10 C 0.16 3.77 5.50 -4.04 -0.02 3.75 16 11 C 0.03 0.65 1.38 -155.66 -0.21 0.44 16 12 C -0.50 -12.96 8.63 -34.44 -0.30 -13.25 16 13 H 0.06 1.50 7.82 -52.49 -0.41 1.09 16 14 C 0.07 1.97 5.39 -17.82 -0.10 1.87 16 15 N -0.87 -24.40 12.91 55.43 0.72 -23.69 16 16 Si 0.89 20.58 29.55 -169.99 -5.02 15.56 16 17 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 18 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 20 C -0.21 -4.42 9.96 -26.70 -0.27 -4.68 16 21 C -0.15 -3.42 9.42 -26.69 -0.25 -3.67 16 22 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 23 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 24 H 0.07 0.77 6.64 -51.93 -0.34 0.42 16 25 H 0.07 0.50 8.12 -51.93 -0.42 0.08 16 26 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 27 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 28 H 0.05 0.48 8.12 -51.93 -0.42 0.05 16 29 H 0.08 0.78 7.74 -51.93 -0.40 0.38 16 30 H 0.13 1.82 6.38 -52.48 -0.34 1.49 16 31 H 0.12 1.48 7.87 -52.49 -0.41 1.06 16 32 H 0.40 7.26 8.35 -40.82 -0.34 6.92 16 33 H 0.07 1.92 8.14 -51.93 -0.42 1.50 16 34 H 0.04 0.86 8.09 -51.93 -0.42 0.44 16 35 H 0.26 7.06 8.32 -40.82 -0.34 6.72 16 36 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.08 1.61 8.14 -51.93 -0.42 1.18 16 38 H 0.08 2.04 8.14 -51.93 -0.42 1.62 16 39 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 331.96 15.07 5.00 5.00 Total: -1.00 -30.12 331.96 -8.08 -38.21 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -6.45 Total: 6.46 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: -0.82 Total: -7.48 kcal Atomic # 7 Polarization: -43.94 SS G_CDS: -0.89 Total: -44.82 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: 0.09 Total: -12.93 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.12 -8.08 -38.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493527434.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.999 kcal (2) G-P(sol) polarization free energy of solvation -30.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds