Wall clock time and date at job start Sun Mar 29 2020 23:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50697 * 120.00579 * 2 1 4 4 N 1.46492 * 109.47438 * 124.59540 * 3 2 1 5 5 C 1.46501 * 119.99959 * 267.38116 * 4 3 2 6 6 C 1.50701 * 109.47041 * 269.99501 * 5 4 3 7 7 H 1.07996 * 119.99899 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99874 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99853 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 120.00190 * 0.02562 * 8 6 5 11 11 H 1.48497 * 109.47278 * 89.99533 * 10 8 6 12 12 H 1.48503 * 109.47276 * 209.99911 * 10 8 6 13 13 H 1.48498 * 109.47125 * 329.99464 * 10 8 6 14 14 C 1.34782 * 120.00141 * 87.37632 * 4 3 2 15 15 O 1.21276 * 119.99750 * 4.99510 * 14 4 3 16 16 C 1.50699 * 120.00101 * 184.99412 * 14 4 3 17 17 H 1.09008 * 110.78029 * 32.56893 * 16 14 4 18 18 C 1.54591 * 110.72382 * 155.81282 * 16 14 4 19 19 C 1.53993 * 105.13996 * 140.31488 * 18 16 14 20 20 N 1.47906 * 107.22499 * 1.12998 * 19 18 16 21 21 C 1.46896 * 110.99945 * 214.25247 * 20 19 18 22 22 C 1.48812 * 105.67710 * 334.90394 * 20 19 18 23 23 H 1.08007 * 119.99539 * 359.97438 * 1 2 3 24 24 H 1.07990 * 120.00755 * 180.02562 * 1 2 3 25 25 H 1.08007 * 119.99539 * 180.02562 * 2 1 3 26 26 H 1.09003 * 109.46777 * 4.59151 * 3 2 1 27 27 H 1.09001 * 109.46961 * 244.59504 * 3 2 1 28 28 H 1.09004 * 109.47291 * 29.99834 * 5 4 3 29 29 H 1.09008 * 109.47395 * 149.99762 * 5 4 3 30 30 H 0.97006 * 119.99864 * 180.02562 * 9 8 6 31 31 H 1.09004 * 110.30916 * 21.40377 * 18 16 14 32 32 H 1.09004 * 110.39399 * 259.27798 * 18 16 14 33 33 H 1.08996 * 109.91562 * 120.57866 * 19 18 16 34 34 H 1.08999 * 109.91963 * 241.67950 * 19 18 16 35 35 H 1.09007 * 109.47127 * 59.87246 * 21 20 19 36 36 H 1.09000 * 109.47301 * 179.87163 * 21 20 19 37 37 H 1.09002 * 109.47162 * 299.87307 * 21 20 19 38 38 H 1.08999 * 110.51783 * 280.54629 * 22 20 19 39 39 H 1.08995 * 110.69808 * 157.49463 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9869 1.3358 1.1369 5 6 2.5629 1.9257 2.4091 6 6 2.9005 3.3944 2.4190 7 1 3.3822 3.8435 1.5631 8 6 2.5933 4.1649 3.5203 9 7 2.8875 5.4468 3.5287 10 14 1.7595 3.3883 5.0004 11 1 2.7913 2.8913 5.9457 12 1 0.9127 4.4016 5.6798 13 1 0.9114 2.2546 4.5525 14 6 4.2264 0.8213 1.0126 15 8 4.6092 0.4153 -0.0642 16 6 5.1367 0.7504 2.2115 17 1 4.5625 0.5888 3.1240 18 6 6.1970 -0.3595 2.0286 19 6 7.5002 0.2314 2.5979 20 7 7.1842 1.5865 3.0994 21 6 8.3196 2.4979 2.9047 22 6 5.9955 2.0350 2.3245 23 1 -0.5400 0.9354 0.0004 24 1 -0.5401 -0.9351 0.0004 25 1 1.8500 -0.9354 -0.0004 26 1 1.3582 2.1319 0.0823 27 1 2.6271 1.3991 -0.9283 28 1 1.4867 1.7994 2.5275 29 1 3.0796 1.4287 3.2303 30 1 2.6717 5.9888 4.3037 31 1 6.3190 -0.5957 0.9714 32 1 5.9119 -1.2526 2.5847 33 1 7.8643 -0.3913 3.4149 34 1 8.2542 0.2924 1.8131 35 1 8.5557 2.5625 1.8424 36 1 8.0596 3.4877 3.2800 37 1 9.1862 2.1198 3.4470 38 1 6.2937 2.3864 1.3368 39 1 5.4551 2.8129 2.8639 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000557383113.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:13:18 Heat of formation + Delta-G solvation = -5.728791 kcal Electronic energy + Delta-G solvation = -19480.665922 eV Core-core repulsion = 16616.970104 eV Total energy + Delta-G solvation = -2863.695818 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.79680 -37.74695 -35.56696 -33.56221 -32.26195 -31.76242 -28.83725 -28.10527 -26.10869 -25.04298 -22.65855 -21.44156 -20.64849 -19.67513 -18.07142 -17.00875 -16.78600 -15.93109 -15.27084 -14.92764 -14.65276 -14.23359 -13.91310 -13.51253 -13.38997 -12.88455 -12.80281 -12.51045 -12.27306 -11.88056 -11.71563 -11.24013 -11.20957 -11.09041 -11.02880 -10.96230 -10.72093 -10.63029 -10.28394 -10.17844 -9.65123 -9.34062 -8.99593 -8.70013 -8.13914 -7.81914 -6.21909 -4.23271 2.45673 3.20083 3.23733 3.27059 3.29278 3.85426 4.27615 4.40945 4.92164 5.05703 5.09941 5.17371 5.33207 5.43002 5.51263 5.57471 5.67172 5.69955 5.86590 5.89714 5.98462 6.08684 6.11767 6.22246 6.22889 6.27063 6.37984 6.53332 6.67473 6.74328 6.83228 6.93763 7.14669 7.30595 7.33242 7.43696 8.09082 8.39149 8.80084 8.88477 9.37534 10.90279 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.013300 B = 0.010455 C = 0.006645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.704096 B = 2677.560685 C = 4212.779499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.156 4.156 3 C 0.142 3.858 4 N -0.585 5.585 5 C 0.206 3.794 6 C -0.539 4.539 7 H 0.078 0.922 8 C 0.079 3.921 9 N -0.889 5.889 10 Si 0.868 3.132 11 H -0.270 1.270 12 H -0.284 1.284 13 H -0.265 1.265 14 C 0.528 3.472 15 O -0.569 6.569 16 C -0.107 4.107 17 H 0.103 0.897 18 C -0.121 4.121 19 C 0.037 3.963 20 N -0.522 5.522 21 C 0.018 3.982 22 C 0.056 3.944 23 H 0.098 0.902 24 H 0.093 0.907 25 H 0.104 0.896 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.033 0.967 29 H 0.034 0.966 30 H 0.266 0.734 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.041 0.959 35 H 0.025 0.975 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.044 0.956 39 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.881 -9.220 -1.277 9.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.175 4.175 3 C 0.019 3.981 4 N -0.313 5.313 5 C 0.085 3.915 6 C -0.577 4.577 7 H 0.096 0.904 8 C -0.125 4.125 9 N -0.526 5.526 10 Si 0.694 3.306 11 H -0.196 1.196 12 H -0.210 1.210 13 H -0.189 1.189 14 C 0.316 3.684 15 O -0.450 6.450 16 C -0.128 4.128 17 H 0.121 0.879 18 C -0.160 4.160 19 C -0.092 4.092 20 N -0.246 5.246 21 C -0.131 4.131 22 C -0.072 4.072 23 H 0.116 0.884 24 H 0.111 0.889 25 H 0.122 0.878 26 H 0.104 0.896 27 H 0.101 0.899 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.076 0.924 31 H 0.103 0.897 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.060 0.940 35 H 0.044 0.956 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.062 0.938 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 2.961 -9.224 -1.145 9.755 hybrid contribution -0.333 -0.142 0.101 0.376 sum 2.628 -9.366 -1.045 9.783 Atomic orbital electron populations 1.23792 0.95769 1.01630 1.01883 1.23406 0.96088 0.99338 0.98704 1.20440 0.92400 0.94728 0.90510 1.47902 1.12201 1.57196 1.14048 1.19898 0.96081 0.94689 0.80800 1.21320 1.41150 0.91309 1.03918 0.90354 1.24834 0.94906 0.94613 0.98100 1.69886 1.46691 1.05627 1.30441 0.86974 0.80392 0.79645 0.83590 1.19564 1.20964 1.18921 1.20244 0.81939 0.76657 0.89560 1.90572 1.74983 1.50733 1.28730 1.22107 0.95954 0.96939 0.97830 0.87866 1.22412 0.93567 0.97432 1.02562 1.22858 0.96867 0.91336 0.98090 1.64848 1.05113 1.01913 1.52751 1.22479 0.93613 0.97761 0.99201 1.23263 0.90169 0.96706 0.97045 0.88361 0.88854 0.87815 0.89586 0.89947 0.94863 0.94874 0.92358 0.89748 0.91213 0.90722 0.94035 0.95639 0.90946 0.91743 0.93803 0.86688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.63 14.32 29.01 0.42 -2.22 16 2 C -0.16 -2.47 9.83 -36.03 -0.35 -2.82 16 3 C 0.14 2.58 5.86 -5.20 -0.03 2.55 16 4 N -0.58 -11.91 2.44 -176.43 -0.43 -12.35 16 5 C 0.21 4.50 4.10 -5.19 -0.02 4.48 16 6 C -0.54 -13.75 8.88 -34.44 -0.31 -14.06 16 7 H 0.08 2.25 8.06 -52.49 -0.42 1.82 16 8 C 0.08 2.09 5.47 -17.82 -0.10 2.00 16 9 N -0.89 -25.29 13.96 55.43 0.77 -24.51 16 10 Si 0.87 19.67 27.47 -169.99 -4.67 15.00 16 11 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 H -0.26 -5.71 6.54 56.52 0.37 -5.34 16 14 C 0.53 10.77 6.83 -10.98 -0.07 10.70 16 15 O -0.57 -12.56 15.22 5.56 0.08 -12.48 16 16 C -0.11 -1.96 2.70 -89.92 -0.24 -2.20 16 17 H 0.10 1.89 6.16 -51.92 -0.32 1.57 16 18 C -0.12 -1.90 6.45 -25.38 -0.16 -2.06 16 19 C 0.04 0.53 6.69 -2.75 -0.02 0.51 16 20 N -0.52 -8.70 5.56 -238.47 -1.33 -10.02 16 21 C 0.02 0.26 9.41 60.06 0.57 0.83 16 22 C 0.06 1.06 5.99 -1.74 -0.01 1.05 16 23 H 0.10 1.29 7.84 -52.48 -0.41 0.88 16 24 H 0.09 1.09 8.06 -52.49 -0.42 0.67 16 25 H 0.10 1.65 8.06 -52.48 -0.42 1.23 16 26 H 0.09 1.54 7.70 -51.93 -0.40 1.14 16 27 H 0.08 1.53 7.44 -51.93 -0.39 1.15 16 28 H 0.03 0.73 7.13 -51.93 -0.37 0.36 16 29 H 0.03 0.71 5.23 -51.92 -0.27 0.44 16 30 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 31 H 0.08 1.41 6.82 -51.93 -0.35 1.06 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.04 0.57 7.73 -51.93 -0.40 0.17 16 35 H 0.03 0.35 8.01 -51.93 -0.42 -0.06 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.04 0.87 7.87 -51.93 -0.41 0.46 16 39 H 0.12 2.51 7.06 -51.93 -0.37 2.14 16 LS Contribution 315.96 15.07 4.76 4.76 Total: -1.00 -28.67 315.96 -7.38 -36.04 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -6.23 Total: 4.79 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: -0.34 Total: -1.23 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: -0.98 Total: -46.88 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: 0.08 Total: -12.48 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -4.67 Total: 15.00 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -28.67 -7.38 -36.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000557383113.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.314 kcal (2) G-P(sol) polarization free energy of solvation -28.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds