Wall clock time and date at job start Sun Mar 29 2020 23:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47070 * 2 1 4 4 N 1.46505 * 109.46866 * 179.97438 * 3 2 1 5 5 N 1.40447 * 126.82030 * 270.17084 * 4 3 2 6 6 C 1.30712 * 106.79121 * 180.26056 * 5 4 3 7 7 N 1.33240 * 108.94840 * 359.75015 * 6 5 4 8 8 C 1.30835 * 109.82619 * 359.97438 * 7 6 5 9 9 C 1.50704 * 125.95996 * 180.02562 * 8 7 6 10 10 N 1.46894 * 109.47233 * 90.02469 * 9 8 7 11 11 C 1.46905 * 111.00021 * 184.00740 * 10 9 8 12 12 H 1.08998 * 109.46571 * 33.05218 * 11 10 9 13 13 C 1.50695 * 109.46844 * 153.05270 * 11 10 9 14 14 H 1.07998 * 120.00306 * 0.02562 * 13 11 10 15 15 C 1.37884 * 119.99550 * 180.02562 * 13 11 10 16 16 N 1.31510 * 120.00073 * 359.97438 * 15 13 11 17 17 Si 1.86806 * 119.99731 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47070 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47135 * 119.99821 * 17 15 13 20 20 H 1.48503 * 109.46706 * 240.00006 * 17 15 13 21 21 C 1.53004 * 109.47126 * 273.05380 * 11 10 9 22 22 C 1.52996 * 109.47126 * 296.57138 * 21 11 10 23 23 H 1.09000 * 109.47311 * 300.00837 * 1 2 3 24 24 H 1.09003 * 109.46643 * 60.00394 * 1 2 3 25 25 H 1.08992 * 109.47460 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47311 * 239.99162 * 2 1 3 27 27 H 1.09003 * 109.46643 * 119.99606 * 2 1 3 28 28 H 1.08998 * 109.47504 * 60.00164 * 3 2 1 29 29 H 1.09003 * 109.47065 * 299.99347 * 3 2 1 30 30 H 1.08004 * 125.52823 * 179.71648 * 6 5 4 31 31 H 1.08997 * 109.47202 * 330.02427 * 9 8 7 32 32 H 1.09003 * 109.46718 * 210.02575 * 9 8 7 33 33 H 1.00896 * 111.00106 * 307.96033 * 10 9 8 34 34 H 0.97002 * 119.99728 * 179.97438 * 16 15 13 35 35 H 1.08994 * 109.46869 * 56.57472 * 21 11 10 36 36 H 1.09002 * 109.46556 * 176.57370 * 21 11 10 37 37 H 1.09000 * 109.47280 * 174.67382 * 22 21 11 38 38 H 1.08991 * 109.47400 * 294.68234 * 22 21 11 39 39 H 1.09005 * 109.47094 * 54.68090 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 7 4.3463 1.4392 1.1253 6 6 5.5745 1.4461 0.6781 7 7 5.5500 1.4479 -0.6540 8 6 4.3112 1.4417 -1.0751 9 6 3.8658 1.4408 -2.5148 10 7 3.7280 0.0556 -2.9839 11 6 3.3868 0.0149 -4.4121 12 1 3.8572 0.8555 -4.9221 13 6 3.8820 -1.2766 -5.0103 14 1 4.3982 -1.9954 -4.3913 15 6 3.6760 -1.5404 -6.3479 16 7 3.0469 -0.6652 -7.1014 17 14 4.2892 -3.1417 -7.0892 18 1 4.9591 -3.9492 -6.0383 19 1 3.1404 -3.9030 -7.6421 20 1 5.2561 -2.8453 -8.1766 21 6 1.8682 0.1039 -4.5764 22 6 1.2132 -1.1206 -3.9341 23 1 -0.3634 0.5140 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8934 -0.5140 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9563 -0.8901 30 1 6.4649 1.4503 1.2894 31 1 4.6061 1.9589 -3.1244 32 1 2.9057 1.9500 -2.5983 33 1 4.5660 -0.4745 -2.7971 34 1 2.9024 -0.8507 -8.0425 35 1 1.5026 1.0084 -4.0904 36 1 1.6187 0.1350 -5.6370 37 1 0.1291 -1.0120 -3.9671 38 1 1.5053 -2.0174 -4.4804 39 1 1.5384 -1.2047 -2.8972 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566428228.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:44:46 Heat of formation + Delta-G solvation = 73.532730 kcal Electronic energy + Delta-G solvation = -19245.612349 eV Core-core repulsion = 16417.646320 eV Total energy + Delta-G solvation = -2827.966029 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.85420 -36.51822 -35.55136 -33.17713 -31.84267 -31.33115 -30.08032 -27.14574 -26.33278 -24.51812 -23.20103 -22.26732 -21.37880 -20.00035 -19.10664 -17.15139 -16.23762 -15.51401 -15.31726 -14.86217 -14.44094 -14.17323 -13.92760 -13.56242 -13.25906 -12.91789 -12.67998 -12.24522 -12.08962 -11.97401 -11.55612 -11.42702 -11.34223 -10.98327 -10.81688 -10.67947 -10.46376 -10.19027 -9.85045 -9.74630 -9.51572 -9.44082 -9.28934 -8.84920 -8.53056 -7.45621 -6.07538 -4.12398 1.83055 2.51403 3.18085 3.26343 3.35049 3.39211 4.32862 4.41697 4.60446 4.87561 5.00417 5.13852 5.23846 5.24508 5.34597 5.46701 5.49651 5.70172 5.92488 5.98376 6.05586 6.18071 6.31639 6.42566 6.52941 6.62697 6.67293 6.77276 7.02769 7.12749 7.15446 7.40117 7.65578 7.71016 7.76248 8.12191 8.24319 8.36290 8.51886 8.94541 9.52566 10.98710 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.023209 B = 0.006234 C = 0.005408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.137241 B = 4490.146062 C = 5176.541533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.143 4.143 3 C 0.134 3.866 4 N -0.367 5.367 5 N -0.333 5.333 6 C 0.193 3.807 7 N -0.548 5.548 8 C 0.298 3.702 9 C 0.133 3.867 10 N -0.677 5.677 11 C 0.217 3.783 12 H 0.006 0.994 13 C -0.513 4.513 14 H 0.060 0.940 15 C 0.065 3.935 16 N -0.888 5.888 17 Si 0.893 3.107 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.285 1.285 21 C -0.101 4.101 22 C -0.119 4.119 23 H 0.051 0.949 24 H 0.060 0.940 25 H 0.061 0.939 26 H 0.094 0.906 27 H 0.063 0.937 28 H 0.089 0.911 29 H 0.097 0.903 30 H 0.212 0.788 31 H 0.061 0.939 32 H 0.084 0.916 33 H 0.340 0.660 34 H 0.261 0.739 35 H 0.009 0.991 36 H 0.086 0.914 37 H 0.013 0.987 38 H 0.053 0.947 39 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.316 4.084 11.469 12.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.182 4.182 3 C 0.012 3.988 4 N -0.157 5.157 5 N -0.161 5.161 6 C -0.110 4.110 7 N -0.276 5.276 8 C 0.021 3.979 9 C 0.001 3.999 10 N -0.310 5.310 11 C 0.110 3.890 12 H 0.024 0.976 13 C -0.551 4.551 14 H 0.078 0.922 15 C -0.137 4.137 16 N -0.527 5.527 17 Si 0.721 3.279 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.211 1.211 21 C -0.139 4.139 22 C -0.176 4.176 23 H 0.070 0.930 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.112 0.888 27 H 0.082 0.918 28 H 0.107 0.893 29 H 0.115 0.885 30 H 0.228 0.772 31 H 0.078 0.922 32 H 0.102 0.898 33 H 0.158 0.842 34 H 0.070 0.930 35 H 0.028 0.972 36 H 0.104 0.896 37 H 0.032 0.968 38 H 0.072 0.928 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.025 4.071 12.043 13.334 hybrid contribution 1.044 -0.608 -0.908 1.511 sum -2.981 3.463 11.135 12.036 Atomic orbital electron populations 1.21652 0.94520 1.02422 1.01710 1.21964 0.96504 0.95252 1.04436 1.21836 0.73627 0.99404 1.03978 1.50349 1.07682 1.53921 1.03730 1.77935 1.02112 1.27223 1.08868 1.25849 0.95655 0.98821 0.90693 1.70514 1.19991 1.25855 1.11280 1.24569 0.85772 0.94518 0.93034 1.20482 1.00373 0.95099 0.83925 1.60849 1.40735 1.07040 1.22397 1.19195 0.92853 0.96689 0.80276 0.97620 1.21176 1.36682 1.03184 0.94101 0.92176 1.24852 0.95035 0.96758 0.97019 1.69886 1.41506 1.34826 1.06453 0.86524 0.78549 0.83679 0.79189 1.19764 1.21012 1.21088 1.21430 0.96716 0.94143 1.01637 1.21455 0.95728 1.00016 1.00410 0.93038 0.92074 0.92015 0.88769 0.91796 0.89312 0.88526 0.77153 0.92152 0.89834 0.84208 0.92952 0.97185 0.89560 0.96816 0.92836 0.93571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.91 37.16 0.37 -1.11 16 2 C -0.14 -1.78 6.26 -26.73 -0.17 -1.94 16 3 C 0.13 1.64 6.30 -4.04 -0.03 1.61 16 4 N -0.37 -5.64 3.64 -58.34 -0.21 -5.85 16 5 N -0.33 -5.30 12.70 29.29 0.37 -4.93 16 6 C 0.19 2.92 13.03 -91.81 -1.20 1.72 16 7 N -0.55 -9.56 11.19 -11.97 -0.13 -9.69 16 8 C 0.30 5.00 7.45 -155.69 -1.16 3.84 16 9 C 0.13 2.27 5.86 -4.98 -0.03 2.24 16 10 N -0.68 -13.20 5.62 -109.22 -0.61 -13.81 16 11 C 0.22 4.99 2.31 -68.86 -0.16 4.83 16 12 H 0.01 0.16 7.70 -51.93 -0.40 -0.24 16 13 C -0.51 -13.14 7.27 -34.44 -0.25 -13.39 16 14 H 0.06 1.56 7.59 -52.49 -0.40 1.16 16 15 C 0.07 1.72 5.30 -17.82 -0.09 1.62 16 16 N -0.89 -24.12 11.36 55.43 0.63 -23.49 16 17 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 18 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 C -0.10 -2.22 5.58 -26.73 -0.15 -2.37 16 22 C -0.12 -2.45 9.44 37.16 0.35 -2.09 16 23 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.09 1.42 7.21 -51.93 -0.37 1.05 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.10 1.08 7.10 -51.93 -0.37 0.72 16 30 H 0.21 2.30 8.06 -52.48 -0.42 1.87 16 31 H 0.06 1.07 7.95 -51.93 -0.41 0.66 16 32 H 0.08 1.31 6.58 -51.93 -0.34 0.97 16 33 H 0.34 7.03 8.12 -39.29 -0.32 6.72 16 34 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 35 H 0.01 0.19 7.59 -51.93 -0.39 -0.20 16 36 H 0.09 2.16 6.17 -51.93 -0.32 1.84 16 37 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 38 H 0.05 1.22 7.33 -51.93 -0.38 0.84 16 39 H 0.05 0.90 6.62 -51.93 -0.34 0.56 16 LS Contribution 319.25 15.07 4.81 4.81 Total: -1.00 -28.24 319.25 -8.83 -37.07 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -6.15 Total: 5.27 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: -2.51 Total: -5.03 kcal Atomic # 7 Polarization: -57.82 SS G_CDS: 0.04 Total: -57.78 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.24 -8.83 -37.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566428228.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.605 kcal (2) G-P(sol) polarization free energy of solvation -28.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds