Wall clock time and date at job start Sun Mar 29 2020 23:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47070 * 2 1 4 4 N 1.46505 * 109.46866 * 179.97438 * 3 2 1 5 5 N 1.40447 * 126.82030 * 270.17084 * 4 3 2 6 6 C 1.30712 * 106.79121 * 180.26056 * 5 4 3 7 7 N 1.33240 * 108.94840 * 359.75015 * 6 5 4 8 8 C 1.30835 * 109.82619 * 359.97438 * 7 6 5 9 9 C 1.50704 * 125.95996 * 180.02562 * 8 7 6 10 10 N 1.46894 * 109.47233 * 90.02469 * 9 8 7 11 11 C 1.46905 * 111.00021 * 184.00740 * 10 9 8 12 12 H 1.08998 * 109.46571 * 33.05218 * 11 10 9 13 13 C 1.50695 * 109.46844 * 153.05270 * 11 10 9 14 14 H 1.07998 * 120.00306 * 0.02562 * 13 11 10 15 15 C 1.37884 * 119.99550 * 180.02562 * 13 11 10 16 16 N 1.31510 * 120.00073 * 359.97438 * 15 13 11 17 17 Si 1.86806 * 119.99731 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47070 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47135 * 119.99821 * 17 15 13 20 20 H 1.48503 * 109.46706 * 240.00006 * 17 15 13 21 21 C 1.53004 * 109.47126 * 273.05380 * 11 10 9 22 22 C 1.52996 * 109.47126 * 296.57138 * 21 11 10 23 23 H 1.09000 * 109.47311 * 300.00837 * 1 2 3 24 24 H 1.09003 * 109.46643 * 60.00394 * 1 2 3 25 25 H 1.08992 * 109.47460 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47311 * 239.99162 * 2 1 3 27 27 H 1.09003 * 109.46643 * 119.99606 * 2 1 3 28 28 H 1.08998 * 109.47504 * 60.00164 * 3 2 1 29 29 H 1.09003 * 109.47065 * 299.99347 * 3 2 1 30 30 H 1.08004 * 125.52823 * 179.71648 * 6 5 4 31 31 H 1.08997 * 109.47202 * 330.02427 * 9 8 7 32 32 H 1.09003 * 109.46718 * 210.02575 * 9 8 7 33 33 H 1.00896 * 111.00106 * 307.96033 * 10 9 8 34 34 H 0.97002 * 119.99728 * 179.97438 * 16 15 13 35 35 H 1.08994 * 109.46869 * 56.57472 * 21 11 10 36 36 H 1.09002 * 109.46556 * 176.57370 * 21 11 10 37 37 H 1.09000 * 109.47280 * 174.67382 * 22 21 11 38 38 H 1.08991 * 109.47400 * 294.68234 * 22 21 11 39 39 H 1.09005 * 109.47094 * 54.68090 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 7 4.3463 1.4392 1.1253 6 6 5.5745 1.4461 0.6781 7 7 5.5500 1.4479 -0.6540 8 6 4.3112 1.4417 -1.0751 9 6 3.8658 1.4408 -2.5148 10 7 3.7280 0.0556 -2.9839 11 6 3.3868 0.0149 -4.4121 12 1 3.8572 0.8555 -4.9221 13 6 3.8820 -1.2766 -5.0103 14 1 4.3982 -1.9954 -4.3913 15 6 3.6760 -1.5404 -6.3479 16 7 3.0469 -0.6652 -7.1014 17 14 4.2892 -3.1417 -7.0892 18 1 4.9591 -3.9492 -6.0383 19 1 3.1404 -3.9030 -7.6421 20 1 5.2561 -2.8453 -8.1766 21 6 1.8682 0.1039 -4.5764 22 6 1.2132 -1.1206 -3.9341 23 1 -0.3634 0.5140 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8934 -0.5140 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9563 -0.8901 30 1 6.4649 1.4503 1.2894 31 1 4.6061 1.9589 -3.1244 32 1 2.9057 1.9500 -2.5983 33 1 4.5660 -0.4745 -2.7971 34 1 2.9024 -0.8507 -8.0425 35 1 1.5026 1.0084 -4.0904 36 1 1.6187 0.1350 -5.6370 37 1 0.1291 -1.0120 -3.9671 38 1 1.5053 -2.0174 -4.4804 39 1 1.5384 -1.2047 -2.8972 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566428228.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:44:45 Heat of formation + Delta-G solvation = 57.665970 kcal Electronic energy + Delta-G solvation = -19246.300383 eV Core-core repulsion = 16417.646320 eV Total energy + Delta-G solvation = -2828.654063 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.07528 -38.20214 -36.61391 -34.87490 -33.08463 -32.89867 -31.56071 -28.74989 -27.50925 -26.15032 -24.94369 -23.33037 -22.48383 -21.33981 -20.82027 -18.62876 -17.83884 -16.93888 -16.65686 -16.28980 -15.76680 -15.70743 -15.29250 -15.11759 -14.55498 -14.27033 -14.06840 -13.85266 -13.34689 -13.16982 -12.94671 -12.83619 -12.69905 -12.54559 -12.38539 -12.30265 -11.98639 -11.65941 -11.60269 -11.21858 -11.00487 -10.79894 -10.68817 -10.54373 -10.47432 -9.12399 -8.08453 -6.18525 0.58613 1.38959 1.41049 1.45093 1.54326 1.94913 2.44305 3.11640 3.21755 3.56109 3.76998 3.83880 3.96877 4.07627 4.29460 4.44880 4.50098 4.63166 4.68066 4.74298 4.84445 4.89317 5.00948 5.15687 5.22973 5.34703 5.36034 5.39540 5.48429 5.52842 5.60715 5.74269 5.84467 5.86405 5.95840 6.30165 6.40530 6.69010 6.98342 7.14327 7.49452 8.96681 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.023209 B = 0.006234 C = 0.005408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.137241 B = 4490.146062 C = 5176.541533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.135 4.135 3 C 0.126 3.874 4 N -0.363 5.363 5 N -0.344 5.344 6 C 0.191 3.809 7 N -0.574 5.574 8 C 0.287 3.713 9 C 0.140 3.860 10 N -0.665 5.665 11 C 0.224 3.776 12 H -0.025 1.025 13 C -0.522 4.522 14 H 0.052 0.948 15 C 0.023 3.977 16 N -0.912 5.912 17 Si 0.947 3.053 18 H -0.271 1.271 19 H -0.281 1.281 20 H -0.284 1.284 21 C -0.095 4.095 22 C -0.107 4.107 23 H 0.070 0.930 24 H 0.063 0.937 25 H 0.060 0.940 26 H 0.066 0.934 27 H 0.054 0.946 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.247 0.753 31 H 0.051 0.949 32 H 0.101 0.899 33 H 0.332 0.668 34 H 0.261 0.739 35 H 0.032 0.968 36 H 0.056 0.944 37 H 0.036 0.964 38 H 0.025 0.975 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.016 4.178 12.803 14.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.173 4.173 3 C 0.005 3.995 4 N -0.153 5.153 5 N -0.172 5.172 6 C -0.111 4.111 7 N -0.303 5.303 8 C 0.010 3.990 9 C 0.009 3.991 10 N -0.297 5.297 11 C 0.116 3.884 12 H -0.007 1.007 13 C -0.561 4.561 14 H 0.071 0.929 15 C -0.176 4.176 16 N -0.551 5.551 17 Si 0.773 3.227 18 H -0.196 1.196 19 H -0.207 1.207 20 H -0.210 1.210 21 C -0.133 4.133 22 C -0.164 4.164 23 H 0.089 0.911 24 H 0.082 0.918 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.127 0.873 29 H 0.127 0.873 30 H 0.263 0.737 31 H 0.069 0.931 32 H 0.119 0.881 33 H 0.149 0.851 34 H 0.070 0.930 35 H 0.051 0.949 36 H 0.074 0.926 37 H 0.055 0.945 38 H 0.044 0.956 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.741 4.167 13.394 14.807 hybrid contribution 1.277 -0.600 -1.253 1.887 sum -3.465 3.567 12.141 13.120 Atomic orbital electron populations 1.21623 0.92560 1.02790 1.02801 1.21851 0.98085 0.94858 1.02531 1.22146 0.72006 0.99654 1.05643 1.50549 1.08645 1.52962 1.03145 1.77907 1.02537 1.27564 1.09231 1.26559 0.96645 0.97719 0.90178 1.70492 1.20628 1.26548 1.12674 1.24321 0.86174 0.95520 0.92983 1.20397 1.01056 0.93436 0.84248 1.60760 1.40249 1.08647 1.20026 1.18979 0.93352 0.94355 0.81678 1.00730 1.21425 1.36393 1.03943 0.94327 0.92948 1.25481 0.95344 0.99259 0.97540 1.69997 1.42419 1.36158 1.06567 0.85680 0.78015 0.80646 0.78328 1.19592 1.20720 1.21011 1.21283 0.95991 0.95934 1.00127 1.21314 0.97025 0.97848 1.00209 0.91126 0.91794 0.92045 0.91559 0.92725 0.87259 0.87261 0.73733 0.93093 0.88114 0.85098 0.93013 0.94929 0.92571 0.94528 0.95600 0.92587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.91 71.98 0.71 -1.76 16 2 C -0.13 -3.10 6.26 30.59 0.19 -2.90 16 3 C 0.13 2.80 6.30 86.38 0.54 3.34 16 4 N -0.36 -10.55 3.64 -338.48 -1.23 -11.78 16 5 N -0.34 -10.32 12.70 -61.24 -0.78 -11.10 16 6 C 0.19 5.46 13.03 180.77 2.36 7.81 16 7 N -0.57 -19.47 11.19 -191.77 -2.15 -21.62 16 8 C 0.29 9.34 7.45 138.23 1.03 10.37 16 9 C 0.14 4.70 5.86 85.56 0.50 5.20 16 10 N -0.67 -25.82 5.62 -499.46 -2.81 -28.63 16 11 C 0.22 10.41 2.31 44.17 0.10 10.51 16 12 H -0.02 -1.29 7.70 -2.39 -0.02 -1.31 16 13 C -0.52 -27.05 7.27 25.60 0.19 -26.87 16 14 H 0.05 2.74 7.59 -2.91 -0.02 2.72 16 15 C 0.02 1.24 5.30 84.66 0.45 1.69 16 16 N -0.91 -50.15 11.36 21.45 0.24 -49.91 16 17 Si 0.95 42.64 29.54 68.60 2.03 44.66 16 18 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 19 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 20 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 21 C -0.09 -4.14 5.58 30.59 0.17 -3.96 16 22 C -0.11 -4.27 9.44 71.98 0.68 -3.59 16 23 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.07 1.91 7.21 -2.39 -0.02 1.90 16 27 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.11 2.15 7.10 -2.39 -0.02 2.13 16 30 H 0.25 4.75 8.06 -2.91 -0.02 4.72 16 31 H 0.05 1.82 7.95 -2.39 -0.02 1.80 16 32 H 0.10 2.99 6.58 -2.39 -0.02 2.98 16 33 H 0.33 13.84 8.12 -89.70 -0.73 13.11 16 34 H 0.26 13.74 8.31 -92.71 -0.77 12.97 16 35 H 0.03 1.25 7.59 -2.39 -0.02 1.23 16 36 H 0.06 2.83 6.17 -2.39 -0.01 2.81 16 37 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.02 1.15 7.33 -2.39 -0.02 1.13 16 39 H 0.06 2.11 6.62 -2.38 -0.02 2.10 16 Total: -1.00 -60.19 319.25 2.54 -57.65 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: 0.31 Total: 20.88 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: 6.92 Total: -0.16 kcal Atomic # 7 Polarization: -116.31 SS G_CDS: -6.72 Total: -123.03 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.66 kcal Total: -60.19 2.54 -57.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566428228.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.316 kcal (2) G-P(sol) polarization free energy of solvation -60.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds