Wall clock time and date at job start Sun Mar 29 2020 23:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47324 * 2 1 4 4 H 1.08996 * 109.47291 * 179.82790 * 3 2 1 5 5 C 1.50710 * 109.46611 * 299.82618 * 3 2 1 6 6 H 1.08001 * 119.99627 * 119.99841 * 5 3 2 7 7 C 1.37872 * 120.00126 * 299.99702 * 5 3 2 8 8 N 1.31518 * 119.99986 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99917 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47316 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46725 * 120.00421 * 9 7 5 12 12 H 1.48499 * 109.47314 * 239.99720 * 9 7 5 13 13 N 1.46896 * 109.47319 * 59.82424 * 3 2 1 14 14 C 1.46898 * 111.00068 * 85.93514 * 13 3 2 15 15 C 1.50695 * 109.47054 * 175.54364 * 14 13 3 16 16 N 1.30827 * 125.96102 * 274.99322 * 15 14 13 17 17 C 1.33245 * 109.83191 * 180.02562 * 16 15 14 18 18 C 1.50702 * 125.53012 * 180.02562 * 17 16 15 19 19 C 1.53002 * 109.46991 * 120.00201 * 18 17 16 20 20 C 1.52999 * 109.47197 * 240.00470 * 18 17 16 21 21 N 1.30712 * 108.94495 * 0.26831 * 17 16 15 22 22 N 1.34433 * 125.96333 * 95.03004 * 15 14 13 23 23 H 0.97004 * 126.82126 * 359.96693 * 22 15 14 24 24 H 1.09002 * 109.46674 * 295.59077 * 1 2 3 25 25 H 1.08994 * 109.47135 * 55.59237 * 1 2 3 26 26 H 1.09000 * 109.46676 * 175.59222 * 1 2 3 27 27 H 1.09002 * 109.47288 * 239.99934 * 2 1 3 28 28 H 1.08999 * 109.47355 * 119.99675 * 2 1 3 29 29 H 0.97001 * 119.99653 * 180.02562 * 8 7 5 30 30 H 1.00898 * 110.99840 * 209.89233 * 13 3 2 31 31 H 1.08994 * 109.46917 * 55.53973 * 14 13 3 32 32 H 1.09009 * 109.46940 * 295.54499 * 14 13 3 33 33 H 1.09000 * 109.46764 * 0.02562 * 18 17 16 34 34 H 1.09003 * 109.46770 * 180.02562 * 19 18 17 35 35 H 1.09004 * 109.47060 * 59.99957 * 19 18 17 36 36 H 1.09000 * 109.46992 * 300.00356 * 19 18 17 37 37 H 1.08995 * 109.47285 * 59.99643 * 20 18 17 38 38 H 1.08993 * 109.46926 * 180.02562 * 20 18 17 39 39 H 1.09004 * 109.46860 * 300.00047 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0031 5 6 1.5412 2.1516 -1.2327 6 1 0.9199 3.0298 -1.1363 7 6 1.8778 1.6793 -2.4835 8 7 2.6339 0.6096 -2.6009 9 14 1.2600 2.5586 -4.0114 10 1 0.4348 3.7264 -3.6108 11 1 2.4177 3.0241 -4.8167 12 1 0.4372 1.6248 -4.8214 13 7 1.5470 2.1362 1.1973 14 6 2.4393 1.9097 2.3420 15 6 1.9632 2.7221 3.5185 16 7 2.2556 3.9750 3.7556 17 6 1.6646 4.3718 4.8820 18 6 1.7634 5.7496 5.4845 19 6 0.3662 6.3660 5.5793 20 6 2.3737 5.6517 6.8841 21 7 0.9896 3.3706 5.3825 22 7 1.1645 2.2857 4.5078 23 1 0.7871 1.3970 4.6011 24 1 -0.3633 0.4439 0.9269 25 1 -0.3633 0.5807 -0.8478 26 1 -0.3633 -1.0247 -0.0790 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 2.8711 0.2775 -3.4809 30 1 1.4287 3.1226 1.0206 31 1 3.4527 2.2118 2.0780 32 1 2.4323 0.8516 2.6043 33 1 2.3949 6.3768 4.8554 34 1 0.4377 7.3628 6.0147 35 1 -0.2657 5.7388 6.2082 36 1 -0.0686 6.4357 4.5822 37 1 3.3690 5.2125 6.8165 38 1 2.4447 6.6482 7.3199 39 1 1.7418 5.0245 7.5130 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578245843.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:43:11 Heat of formation + Delta-G solvation = 63.048573 kcal Electronic energy + Delta-G solvation = -18538.371551 eV Core-core repulsion = 15709.950895 eV Total energy + Delta-G solvation = -2828.420656 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.96283 -36.58646 -35.64372 -33.04054 -31.97338 -31.18110 -29.87952 -27.24613 -26.92415 -24.66896 -23.63456 -23.18584 -20.66359 -19.51896 -19.13824 -17.85185 -16.43035 -15.45522 -14.97968 -14.89870 -14.53652 -14.20525 -13.92134 -13.57538 -13.03498 -12.95409 -12.46783 -12.27826 -12.10372 -11.73659 -11.62032 -11.41305 -11.33146 -11.01136 -10.97721 -10.80376 -10.47051 -10.19015 -9.86352 -9.85714 -9.79974 -9.50600 -9.29042 -8.85106 -8.52708 -7.45767 -6.07471 -4.12873 1.78303 2.82249 3.05497 3.26784 3.35332 3.39637 4.05700 4.37698 4.66381 4.88166 5.06571 5.12981 5.23517 5.33194 5.37993 5.53278 5.67018 5.73917 5.84936 5.90170 5.96556 6.14360 6.21543 6.42430 6.45200 6.57353 6.63003 6.75782 7.11712 7.14349 7.23224 7.38108 7.64690 7.70342 7.76059 8.13591 8.24512 8.31872 8.51463 8.94064 9.52243 10.98588 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.030165 B = 0.004546 C = 0.004225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.010881 B = 6158.456491 C = 6625.950141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.104 4.104 3 C 0.216 3.784 4 H 0.007 0.993 5 C -0.513 4.513 6 H 0.061 0.939 7 C 0.065 3.935 8 N -0.888 5.888 9 Si 0.894 3.106 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.679 5.679 14 C 0.131 3.869 15 C 0.308 3.692 16 N -0.541 5.541 17 C 0.229 3.771 18 C 0.000 4.000 19 C -0.142 4.142 20 C -0.141 4.141 21 N -0.322 5.322 22 N -0.476 5.476 23 H 0.440 0.560 24 H 0.039 0.961 25 H 0.057 0.943 26 H 0.014 0.986 27 H 0.090 0.910 28 H 0.010 0.990 29 H 0.261 0.739 30 H 0.341 0.659 31 H 0.062 0.938 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.064 0.936 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.261 5.001 14.200 15.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.143 4.143 3 C 0.109 3.891 4 H 0.024 0.976 5 C -0.551 4.551 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.527 5.527 9 Si 0.722 3.278 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.210 1.210 13 N -0.312 5.312 14 C -0.001 4.001 15 C 0.029 3.971 16 N -0.271 5.271 17 C -0.054 4.054 18 C -0.022 4.022 19 C -0.200 4.200 20 C -0.199 4.199 21 N -0.152 5.152 22 N -0.193 5.193 23 H 0.285 0.715 24 H 0.058 0.942 25 H 0.076 0.924 26 H 0.033 0.967 27 H 0.108 0.892 28 H 0.028 0.972 29 H 0.071 0.929 30 H 0.159 0.841 31 H 0.080 0.920 32 H 0.104 0.896 33 H 0.114 0.886 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.791 4.656 14.684 15.508 hybrid contribution 0.220 0.105 -1.255 1.278 sum -1.571 4.761 13.429 14.334 Atomic orbital electron populations 1.21454 0.97472 0.97531 1.01304 1.21470 0.95057 0.98089 0.99652 1.19218 0.93363 0.91403 0.85121 0.97561 1.21177 1.31793 1.12038 0.90122 0.92130 1.24863 0.94951 0.94976 0.98946 1.69883 1.36592 1.22692 1.23535 0.86496 0.78612 0.79708 0.82960 1.19728 1.21062 1.21007 1.60882 1.47425 1.17151 1.05742 1.20525 0.96181 0.96703 0.86662 1.24595 0.89724 0.91025 0.91785 1.70406 1.28686 1.10277 1.17692 1.24133 0.93645 0.96524 0.91083 1.19482 0.98680 0.87521 0.96476 1.21816 0.95246 1.00498 1.02485 1.21809 1.00910 1.02161 0.95069 1.77835 1.25928 0.95185 1.16240 1.47953 1.39271 1.13486 1.18543 0.71461 0.94211 0.92361 0.96656 0.89212 0.97171 0.92926 0.84093 0.91963 0.89606 0.88578 0.91719 0.92020 0.92331 0.92563 0.91706 0.92019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.56 9.52 37.16 0.35 -2.21 16 2 C -0.10 -2.37 5.59 -26.73 -0.15 -2.52 16 3 C 0.22 5.08 2.30 -68.86 -0.16 4.92 16 4 H 0.01 0.17 7.71 -51.93 -0.40 -0.23 16 5 C -0.51 -13.32 7.26 -34.44 -0.25 -13.57 16 6 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 7 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 8 N -0.89 -24.32 11.32 55.43 0.63 -23.70 16 9 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 10 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 13 N -0.68 -13.55 5.64 -109.22 -0.62 -14.16 16 14 C 0.13 2.21 6.16 -4.98 -0.03 2.18 16 15 C 0.31 5.04 7.70 -155.70 -1.20 3.84 16 16 N -0.54 -9.44 11.19 -8.16 -0.09 -9.53 16 17 C 0.23 3.56 6.65 -156.85 -1.04 2.52 16 18 C 0.00 -0.01 3.39 -91.77 -0.31 -0.32 16 19 C -0.14 -1.48 9.18 37.16 0.34 -1.14 16 20 C -0.14 -1.39 9.18 37.16 0.34 -1.05 16 21 N -0.32 -5.01 12.80 32.42 0.41 -4.60 16 22 N -0.48 -6.96 7.45 32.62 0.24 -6.72 16 23 H 0.44 5.14 8.96 -182.33 -1.63 3.51 16 24 H 0.04 0.80 7.74 -51.93 -0.40 0.40 16 25 H 0.06 1.36 7.07 -51.93 -0.37 0.99 16 26 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.09 2.30 6.06 -51.93 -0.31 1.98 16 28 H 0.01 0.20 7.60 -51.93 -0.39 -0.19 16 29 H 0.26 6.84 8.31 -40.82 -0.34 6.51 16 30 H 0.34 7.15 8.13 -39.29 -0.32 6.83 16 31 H 0.06 1.08 7.94 -51.93 -0.41 0.67 16 32 H 0.09 1.31 7.61 -51.92 -0.40 0.91 16 33 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 321.37 15.07 4.84 4.84 Total: -1.00 -28.65 321.37 -9.36 -38.01 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -7.56 Total: 5.82 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: -2.20 Total: -5.73 kcal Atomic # 7 Polarization: -59.28 SS G_CDS: 0.58 Total: -58.71 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.65 -9.36 -38.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578245843.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.058 kcal (2) G-P(sol) polarization free energy of solvation -28.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds