Wall clock time and date at job start Sun Mar 29 2020 23:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50697 * 119.99645 * 2 1 4 4 N 1.46899 * 109.47241 * 124.59078 * 3 2 1 5 5 C 1.46896 * 111.00233 * 164.26307 * 4 3 2 6 6 C 1.50703 * 109.47028 * 293.94953 * 5 4 3 7 7 H 1.07993 * 119.99980 * 0.02562 * 6 5 4 8 8 C 1.37883 * 119.99895 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99691 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 119.99673 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47375 * 60.00109 * 10 8 6 12 12 H 1.48503 * 109.46975 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47317 * 300.00054 * 10 8 6 14 14 C 1.46902 * 111.00252 * 288.21765 * 4 3 2 15 15 H 1.09003 * 109.39904 * 51.42798 * 14 4 3 16 16 C 1.53072 * 109.39656 * 291.69095 * 14 4 3 17 17 C 1.53348 * 108.41126 * 190.95305 * 16 14 4 18 18 C 1.52924 * 108.68734 * 67.52668 * 17 16 14 19 19 N 1.45751 * 110.48808 * 309.26376 * 18 17 16 20 20 C 1.46494 * 117.94580 * 199.07561 * 19 18 17 21 21 C 1.33357 * 124.10710 * 19.04739 * 19 18 17 22 22 O 1.21274 * 118.24888 * 177.79474 * 21 19 18 23 23 H 1.08000 * 119.99476 * 180.02562 * 1 2 3 24 24 H 1.07997 * 120.00080 * 359.72669 * 1 2 3 25 25 H 1.07996 * 120.00113 * 179.97438 * 2 1 3 26 26 H 1.09002 * 109.46800 * 244.58766 * 3 2 1 27 27 H 1.08998 * 109.47320 * 4.59114 * 3 2 1 28 28 H 1.08994 * 109.47161 * 53.95069 * 5 4 3 29 29 H 1.09009 * 109.47132 * 173.95637 * 5 4 3 30 30 H 0.97003 * 119.99536 * 180.02562 * 9 8 6 31 31 H 1.08995 * 109.67396 * 310.69462 * 16 14 4 32 32 H 1.08996 * 109.67831 * 71.23463 * 16 14 4 33 33 H 1.09001 * 109.58566 * 307.77251 * 17 16 14 34 34 H 1.09004 * 109.74147 * 187.37578 * 17 16 14 35 35 H 1.08998 * 109.29758 * 188.95007 * 18 17 16 36 36 H 1.09000 * 109.29476 * 69.57592 * 18 17 16 37 37 H 1.09008 * 109.46869 * 179.97438 * 20 19 18 38 38 H 1.08998 * 109.46938 * 299.97307 * 20 19 18 39 39 H 1.08993 * 109.47458 * 59.97861 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9892 1.3361 1.1401 5 6 3.9920 2.3968 0.9754 6 6 4.8796 2.0711 -0.1982 7 1 4.7148 1.1669 -0.7652 8 6 5.9012 2.9282 -0.5487 9 7 6.1014 4.0295 0.1415 10 14 7.0008 2.5247 -2.0038 11 1 6.1765 2.4267 -3.2351 12 1 8.0147 3.5969 -2.1703 13 1 7.6860 1.2295 -1.7625 14 6 2.2605 1.4928 2.4060 15 1 1.4704 0.7440 2.4640 16 6 1.6392 2.8905 2.4653 17 6 1.1248 3.1318 3.8897 18 6 2.3235 3.2185 4.8353 19 7 3.2086 2.0766 4.6432 20 6 4.1560 1.7546 5.7131 21 6 3.2097 1.3062 3.5546 22 8 4.0205 0.4068 3.4888 23 1 -0.5399 -0.9354 0.0004 24 1 -0.5400 0.9353 0.0045 25 1 1.8501 -0.9353 0.0004 26 1 2.6270 1.3993 -0.9283 27 1 1.3580 2.1319 0.0823 28 1 3.4895 3.3476 0.7980 29 1 4.5969 2.4686 1.8794 30 1 6.8200 4.6327 -0.1053 31 1 2.3922 3.6377 2.2153 32 1 0.8103 2.9539 1.7604 33 1 0.4807 2.3055 4.1905 34 1 0.5628 4.0651 3.9250 35 1 1.9690 3.2302 5.8660 36 1 2.8735 4.1383 4.6362 37 1 4.7446 0.8828 5.4270 38 1 4.8200 2.6032 5.8779 39 1 3.6085 1.5382 6.6303 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590002646.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:11:07 Heat of formation + Delta-G solvation = -0.460036 kcal Electronic energy + Delta-G solvation = -19735.385630 eV Core-core repulsion = 16871.918283 eV Total energy + Delta-G solvation = -2863.467347 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.27547 -37.14257 -35.93151 -33.46286 -32.94513 -31.60846 -28.63887 -26.92038 -26.72352 -24.96365 -23.28403 -22.03752 -20.75338 -19.19586 -18.04545 -16.59566 -16.24288 -16.10596 -15.49686 -14.75571 -14.59748 -14.04647 -13.95498 -13.60788 -13.34752 -13.24966 -12.64879 -12.38258 -12.15846 -11.85718 -11.71436 -11.62110 -11.31475 -11.05207 -10.94054 -10.78816 -10.65673 -10.48687 -10.26800 -9.80611 -9.29283 -9.06844 -8.88039 -8.39686 -8.34505 -7.22369 -6.00255 -4.00478 2.64870 3.19598 3.36236 3.39533 3.39916 3.44169 4.44959 4.75169 4.89169 4.91455 5.07362 5.22922 5.36048 5.46358 5.52179 5.58515 5.61711 5.63895 5.70756 5.81156 5.92184 5.99539 6.03863 6.11288 6.18072 6.41930 6.48140 6.52716 6.74780 7.01105 7.02079 7.27562 7.35028 7.74187 7.87456 8.09293 8.16571 8.52105 8.77789 9.05580 9.62787 11.10717 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.016972 B = 0.008363 C = 0.006565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.418368 B = 3347.083477 C = 4263.772021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.120 4.120 3 C 0.081 3.919 4 N -0.509 5.509 5 C 0.194 3.806 6 C -0.505 4.505 7 H 0.064 0.936 8 C 0.056 3.944 9 N -0.899 5.899 10 Si 0.898 3.102 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.276 1.276 14 C 0.080 3.920 15 H 0.097 0.903 16 C -0.164 4.164 17 C -0.129 4.129 18 C 0.118 3.882 19 N -0.615 5.615 20 C 0.074 3.926 21 C 0.526 3.474 22 O -0.524 6.524 23 H 0.091 0.909 24 H 0.090 0.910 25 H 0.110 0.890 26 H 0.100 0.900 27 H 0.031 0.969 28 H -0.004 1.004 29 H 0.031 0.969 30 H 0.261 0.739 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.090 0.910 38 H 0.055 0.945 39 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.541 -0.805 8.090 14.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C -0.139 4.139 3 C -0.046 4.046 4 N -0.233 5.233 5 C 0.070 3.930 6 C -0.544 4.544 7 H 0.082 0.918 8 C -0.145 4.145 9 N -0.539 5.539 10 Si 0.726 3.274 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.201 1.201 14 C -0.033 4.033 15 H 0.115 0.885 16 C -0.204 4.204 17 C -0.167 4.167 18 C -0.006 4.006 19 N -0.351 5.351 20 C -0.069 4.069 21 C 0.314 3.686 22 O -0.398 6.398 23 H 0.109 0.891 24 H 0.108 0.892 25 H 0.128 0.872 26 H 0.118 0.882 27 H 0.049 0.951 28 H 0.013 0.987 29 H 0.049 0.951 30 H 0.070 0.930 31 H 0.104 0.896 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.109 0.891 38 H 0.074 0.926 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.711 -1.584 8.043 13.488 hybrid contribution 0.214 0.807 -0.670 1.071 sum -10.497 -0.777 7.373 12.851 Atomic orbital electron populations 1.23694 0.95922 1.01003 1.05262 1.23204 0.95321 0.99704 0.95642 1.21246 0.94143 0.92767 0.96475 1.62092 1.12987 1.50330 0.97887 1.19772 0.88693 0.86616 0.97949 1.21100 1.13769 1.06704 1.12799 0.91808 1.24964 0.97433 0.95027 0.97089 1.69946 1.31970 1.11866 1.40081 0.86557 0.80255 0.77986 0.82609 1.20261 1.21397 1.20130 1.21512 0.94439 0.96274 0.91037 0.88481 1.22459 1.01802 0.99667 0.96450 1.21799 0.96919 1.02670 0.95320 1.21304 0.91054 0.88844 0.99374 1.47201 1.38371 1.30781 1.18772 1.21656 0.93308 1.02774 0.89176 1.20030 0.84631 0.81371 0.82584 1.90661 1.37897 1.32482 1.78800 0.89101 0.89206 0.87177 0.88208 0.95115 0.98683 0.95129 0.92954 0.89642 0.91031 0.91402 0.90187 0.91259 0.91875 0.89109 0.92601 0.92958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.01 14.32 29.01 0.42 -2.60 16 2 C -0.12 -1.97 8.81 -36.03 -0.32 -2.29 16 3 C 0.08 1.56 5.15 -4.98 -0.03 1.54 16 4 N -0.51 -11.32 4.16 -231.18 -0.96 -12.28 16 5 C 0.19 5.12 3.75 -4.98 -0.02 5.10 16 6 C -0.51 -14.50 8.29 -34.44 -0.29 -14.78 16 7 H 0.06 1.82 7.25 -52.49 -0.38 1.44 16 8 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 9 N -0.90 -26.95 13.29 55.43 0.74 -26.22 16 10 Si 0.90 22.14 29.54 -169.99 -5.02 17.12 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 14 C 0.08 1.49 2.31 -69.08 -0.16 1.34 16 15 H 0.10 1.69 7.28 -51.93 -0.38 1.32 16 16 C -0.16 -2.59 4.65 -26.51 -0.12 -2.71 16 17 C -0.13 -1.53 6.02 -26.59 -0.16 -1.69 16 18 C 0.12 1.48 6.40 -4.48 -0.03 1.45 16 19 N -0.62 -10.13 3.21 -182.86 -0.59 -10.72 16 20 C 0.07 1.06 10.47 59.84 0.63 1.69 16 21 C 0.53 10.68 5.77 -11.87 -0.07 10.61 16 22 O -0.52 -12.75 15.66 5.56 0.09 -12.67 16 23 H 0.09 1.08 8.06 -52.49 -0.42 0.66 16 24 H 0.09 1.15 7.84 -52.49 -0.41 0.73 16 25 H 0.11 1.85 8.06 -52.49 -0.42 1.43 16 26 H 0.10 2.12 6.59 -51.93 -0.34 1.78 16 27 H 0.03 0.55 6.03 -51.93 -0.31 0.24 16 28 H 0.00 -0.12 6.59 -51.93 -0.34 -0.46 16 29 H 0.03 0.91 6.96 -51.92 -0.36 0.55 16 30 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 31 H 0.09 1.59 5.99 -51.93 -0.31 1.28 16 32 H 0.07 1.04 6.93 -51.93 -0.36 0.68 16 33 H 0.07 0.74 8.12 -51.93 -0.42 0.32 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.09 1.51 6.59 -51.92 -0.34 1.17 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 309.83 15.07 4.67 4.67 Total: -1.00 -33.11 309.83 -7.37 -40.48 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -6.06 Total: 0.44 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: -0.24 Total: -0.83 kcal Atomic # 7 Polarization: -48.40 SS G_CDS: -0.81 Total: -49.21 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: 0.09 Total: -12.67 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.11 -7.37 -40.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590002646.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.022 kcal (2) G-P(sol) polarization free energy of solvation -33.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds