Wall clock time and date at job start Sun Mar 29 2020 23:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 H 1.08000 * 119.99723 * 120.00060 * 4 2 1 6 6 C 1.37873 * 119.99930 * 300.00010 * 4 2 1 7 7 N 1.31509 * 120.00195 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99968 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46680 * 60.00159 * 8 6 4 10 10 H 1.48492 * 109.47298 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46944 * 300.00675 * 8 6 4 12 12 N 1.46894 * 109.47515 * 239.99762 * 2 1 3 13 13 C 1.46908 * 110.99837 * 84.99962 * 12 2 1 14 14 C 1.50706 * 109.46935 * 180.02562 * 13 12 2 15 15 N 1.30826 * 125.95878 * 274.99807 * 14 13 12 16 16 C 1.33245 * 109.82943 * 180.02562 * 15 14 13 17 17 C 1.50693 * 125.52949 * 179.97438 * 16 15 14 18 18 C 1.53006 * 109.47023 * 60.00071 * 17 16 15 19 19 C 1.53003 * 109.47112 * 179.97438 * 17 16 15 20 20 C 1.52997 * 109.47370 * 300.00143 * 17 16 15 21 21 N 1.30716 * 108.94057 * 0.02562 * 16 15 14 22 22 N 1.34426 * 125.95743 * 94.69300 * 14 13 12 23 23 H 0.96999 * 126.82701 * 359.97438 * 22 14 13 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 27 27 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 28 28 H 1.00898 * 111.00604 * 208.95432 * 12 2 1 29 29 H 1.08993 * 109.47111 * 300.00155 * 13 12 2 30 30 H 1.09002 * 109.46900 * 60.00465 * 13 12 2 31 31 H 1.09002 * 109.47166 * 60.00519 * 18 17 16 32 32 H 1.09002 * 109.46741 * 179.97438 * 18 17 16 33 33 H 1.08991 * 109.47073 * 299.99707 * 18 17 16 34 34 H 1.08999 * 109.47032 * 60.00355 * 19 17 16 35 35 H 1.09002 * 109.46936 * 179.97438 * 19 17 16 36 36 H 1.09002 * 109.47234 * 299.99528 * 19 17 16 37 37 H 1.09002 * 109.46888 * 59.99801 * 20 17 16 38 38 H 1.09002 * 109.47569 * 179.97438 * 20 17 16 39 39 H 1.08999 * 109.47137 * 299.99867 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1202 4.0081 9 1 3.8063 -1.1207 4.0082 10 1 1.8260 -0.4204 5.2205 11 1 1.8259 -2.5201 4.0078 12 7 2.0197 -0.6925 -1.1993 13 6 2.0825 0.2226 -2.3468 14 6 2.5875 -0.5219 -3.5560 15 7 3.8426 -0.7239 -3.8649 16 6 3.9228 -1.4178 -4.9996 17 6 5.1995 -1.8444 -5.6768 18 6 6.0038 -2.7392 -4.7316 19 6 4.8655 -2.6208 -6.9523 20 6 6.0256 -0.6071 -6.0339 21 7 2.7142 -1.6674 -5.4306 22 7 1.8268 -1.0990 -4.5021 23 1 0.8576 -1.1169 -4.5380 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 0.7081 1.1610 3.4844 28 1 2.9173 -1.1205 -1.0286 29 1 1.0872 0.6163 -2.5525 30 1 2.7589 1.0462 -2.1181 31 1 5.4154 -3.6208 -4.4773 32 1 6.9271 -3.0482 -5.2217 33 1 6.2418 -2.1866 -3.8228 34 1 4.2924 -1.9836 -7.6258 35 1 5.7891 -2.9289 -7.4424 36 1 4.2773 -3.5024 -6.6975 37 1 6.2635 -0.0544 -5.1250 38 1 6.9493 -0.9157 -6.5234 39 1 5.4526 0.0304 -6.7073 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591259237.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:49:55 Heat of formation + Delta-G solvation = 64.674288 kcal Electronic energy + Delta-G solvation = -18510.704986 eV Core-core repulsion = 15682.354826 eV Total energy + Delta-G solvation = -2828.350160 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.98107 -37.02257 -35.99402 -32.91034 -31.97407 -30.93487 -28.62085 -27.28167 -27.23887 -25.57907 -24.59947 -23.07452 -20.65873 -19.89478 -18.87919 -17.62857 -16.48056 -15.50689 -15.19394 -14.89632 -14.30998 -14.20935 -14.00382 -13.67716 -13.40873 -12.51746 -12.35696 -12.29307 -12.13257 -11.69016 -11.68229 -11.43879 -11.25392 -11.09342 -10.98092 -10.91576 -10.83088 -10.42242 -10.24363 -10.11971 -9.79920 -9.76091 -9.29519 -8.92759 -8.53247 -7.50177 -6.08376 -4.14993 1.80826 2.83680 3.08089 3.29736 3.33903 3.37217 4.03942 4.37207 4.59956 4.83495 4.92519 5.15184 5.21289 5.23084 5.38598 5.55909 5.59956 5.74612 5.78839 5.80931 5.87467 5.93518 5.97015 6.04885 6.27727 6.32580 6.50292 6.63542 6.73727 7.00462 7.08010 7.24704 7.34781 7.70770 7.77654 8.15244 8.22323 8.34115 8.50672 8.92723 9.51213 10.98018 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.031605 B = 0.004365 C = 0.004038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.735057 B = 6412.660497 C = 6932.889100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.213 3.787 3 H 0.007 0.993 4 C -0.520 4.520 5 H 0.060 0.940 6 C 0.064 3.936 7 N -0.890 5.890 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.276 1.276 12 N -0.682 5.682 13 C 0.131 3.869 14 C 0.308 3.692 15 N -0.537 5.537 16 C 0.234 3.766 17 C 0.028 3.972 18 C -0.136 4.136 19 C -0.136 4.136 20 C -0.135 4.135 21 N -0.323 5.323 22 N -0.477 5.477 23 H 0.440 0.560 24 H 0.032 0.968 25 H 0.004 0.996 26 H 0.083 0.917 27 H 0.262 0.738 28 H 0.341 0.659 29 H 0.086 0.914 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.726 -2.741 -15.437 16.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.106 3.894 3 H 0.025 0.975 4 C -0.559 4.559 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.529 5.529 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.202 1.202 12 N -0.316 5.316 13 C -0.001 4.001 14 C 0.029 3.971 15 N -0.266 5.266 16 C -0.049 4.049 17 C 0.025 3.975 18 C -0.194 4.194 19 C -0.193 4.193 20 C -0.193 4.193 21 N -0.153 5.153 22 N -0.194 5.194 23 H 0.285 0.715 24 H 0.051 0.949 25 H 0.023 0.977 26 H 0.102 0.898 27 H 0.072 0.928 28 H 0.159 0.841 29 H 0.105 0.895 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.170 -3.140 -15.920 17.031 hybrid contribution 0.121 0.160 1.249 1.265 sum 5.291 -2.980 -14.671 15.878 Atomic orbital electron populations 1.21753 0.97691 0.99484 0.99531 1.19162 0.92638 0.92615 0.85018 0.97550 1.21171 1.31742 1.12695 0.90251 0.92151 1.24892 0.94934 0.94953 0.99052 1.69871 1.36431 1.22816 1.23733 0.86552 0.79185 0.79741 0.81902 1.20206 1.21262 1.20195 1.60856 1.33113 1.32097 1.05511 1.20485 1.00287 0.93298 0.86015 1.24592 0.86496 0.93514 0.92489 1.70317 1.18493 1.22091 1.15734 1.24043 0.93741 0.95532 0.91580 1.18894 0.87872 0.96267 0.94446 1.21826 0.99076 0.99072 0.99467 1.21795 1.01433 1.00273 0.95847 1.21818 0.98962 0.96364 1.02191 1.77882 1.00207 1.22620 1.14560 1.47945 1.10294 1.42547 1.18583 0.71494 0.94854 0.97730 0.89808 0.92768 0.84052 0.89545 0.91988 0.92630 0.91853 0.91239 0.92235 0.91994 0.92121 0.91336 0.91822 0.92826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 9.19 37.16 0.34 -2.63 16 2 C 0.21 5.15 2.60 -68.87 -0.18 4.97 16 3 H 0.01 0.18 7.80 -51.93 -0.40 -0.23 16 4 C -0.52 -13.93 8.59 -34.44 -0.30 -14.23 16 5 H 0.06 1.61 7.62 -52.49 -0.40 1.21 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -24.76 11.32 55.43 0.63 -24.13 16 8 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 9 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 N -0.68 -14.02 6.29 -109.21 -0.69 -14.71 16 13 C 0.13 2.24 6.11 -4.97 -0.03 2.21 16 14 C 0.31 5.08 7.75 -155.70 -1.21 3.88 16 15 N -0.54 -9.24 11.19 -8.16 -0.09 -9.34 16 16 C 0.23 3.65 6.36 -156.85 -1.00 2.65 16 17 C 0.03 0.34 0.99 -155.66 -0.15 0.19 16 18 C -0.14 -1.55 8.45 37.16 0.31 -1.24 16 19 C -0.14 -1.41 7.93 37.16 0.29 -1.12 16 20 C -0.14 -1.45 8.46 37.16 0.31 -1.13 16 21 N -0.32 -5.11 12.06 32.42 0.39 -4.72 16 22 N -0.48 -7.09 7.45 32.62 0.24 -6.85 16 23 H 0.44 5.25 8.96 -182.34 -1.63 3.62 16 24 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.00 0.08 7.45 -51.93 -0.39 -0.31 16 26 H 0.08 2.17 6.07 -51.93 -0.32 1.85 16 27 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 28 H 0.34 7.27 8.22 -39.29 -0.32 6.94 16 29 H 0.09 1.34 7.44 -51.93 -0.39 0.96 16 30 H 0.06 1.08 8.06 -51.93 -0.42 0.66 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 322.24 15.07 4.86 4.86 Total: -1.00 -29.26 322.24 -9.01 -38.26 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -7.63 Total: 5.48 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: -1.69 Total: -4.82 kcal Atomic # 7 Polarization: -60.22 SS G_CDS: 0.48 Total: -59.74 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.26 -9.01 -38.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591259237.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.939 kcal (2) G-P(sol) polarization free energy of solvation -29.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds