Wall clock time and date at job start Sun Mar 29 2020 23:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 H 1.08000 * 119.99723 * 120.00060 * 4 2 1 6 6 C 1.37873 * 119.99930 * 300.00010 * 4 2 1 7 7 N 1.31509 * 120.00195 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99968 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46680 * 60.00159 * 8 6 4 10 10 H 1.48492 * 109.47298 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46944 * 300.00675 * 8 6 4 12 12 N 1.46894 * 109.47515 * 239.99762 * 2 1 3 13 13 C 1.46908 * 110.99837 * 84.99962 * 12 2 1 14 14 C 1.50706 * 109.46935 * 180.02562 * 13 12 2 15 15 N 1.30826 * 125.95878 * 274.99807 * 14 13 12 16 16 C 1.33245 * 109.82943 * 180.02562 * 15 14 13 17 17 C 1.50693 * 125.52949 * 179.97438 * 16 15 14 18 18 C 1.53006 * 109.47023 * 60.00071 * 17 16 15 19 19 C 1.53003 * 109.47112 * 179.97438 * 17 16 15 20 20 C 1.52997 * 109.47370 * 300.00143 * 17 16 15 21 21 N 1.30716 * 108.94057 * 0.02562 * 16 15 14 22 22 N 1.34426 * 125.95743 * 94.69300 * 14 13 12 23 23 H 0.96999 * 126.82701 * 359.97438 * 22 14 13 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 27 27 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 28 28 H 1.00898 * 111.00604 * 208.95432 * 12 2 1 29 29 H 1.08993 * 109.47111 * 300.00155 * 13 12 2 30 30 H 1.09002 * 109.46900 * 60.00465 * 13 12 2 31 31 H 1.09002 * 109.47166 * 60.00519 * 18 17 16 32 32 H 1.09002 * 109.46741 * 179.97438 * 18 17 16 33 33 H 1.08991 * 109.47073 * 299.99707 * 18 17 16 34 34 H 1.08999 * 109.47032 * 60.00355 * 19 17 16 35 35 H 1.09002 * 109.46936 * 179.97438 * 19 17 16 36 36 H 1.09002 * 109.47234 * 299.99528 * 19 17 16 37 37 H 1.09002 * 109.46888 * 59.99801 * 20 17 16 38 38 H 1.09002 * 109.47569 * 179.97438 * 20 17 16 39 39 H 1.08999 * 109.47137 * 299.99867 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1202 4.0081 9 1 3.8063 -1.1207 4.0082 10 1 1.8260 -0.4204 5.2205 11 1 1.8259 -2.5201 4.0078 12 7 2.0197 -0.6925 -1.1993 13 6 2.0825 0.2226 -2.3468 14 6 2.5875 -0.5219 -3.5560 15 7 3.8426 -0.7239 -3.8649 16 6 3.9228 -1.4178 -4.9996 17 6 5.1995 -1.8444 -5.6768 18 6 6.0038 -2.7392 -4.7316 19 6 4.8655 -2.6208 -6.9523 20 6 6.0256 -0.6071 -6.0339 21 7 2.7142 -1.6674 -5.4306 22 7 1.8268 -1.0990 -4.5021 23 1 0.8576 -1.1169 -4.5380 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 0.7081 1.1610 3.4844 28 1 2.9173 -1.1205 -1.0286 29 1 1.0872 0.6163 -2.5525 30 1 2.7589 1.0462 -2.1181 31 1 5.4154 -3.6208 -4.4773 32 1 6.9271 -3.0482 -5.2217 33 1 6.2418 -2.1866 -3.8228 34 1 4.2924 -1.9836 -7.6258 35 1 5.7891 -2.9289 -7.4424 36 1 4.2773 -3.5024 -6.6975 37 1 6.2635 -0.0544 -5.1250 38 1 6.9493 -0.9157 -6.5234 39 1 5.4526 0.0304 -6.7073 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591259237.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:49:55 Heat of formation + Delta-G solvation = 45.733594 kcal Electronic energy + Delta-G solvation = -18511.526316 eV Core-core repulsion = 15682.354826 eV Total energy + Delta-G solvation = -2829.171490 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.21310 -38.16696 -37.54650 -34.75553 -33.22027 -32.45025 -30.25498 -28.15447 -28.14008 -27.43614 -26.27174 -24.18346 -22.07000 -21.66896 -19.98534 -18.97607 -18.28135 -16.98505 -16.65005 -16.19268 -15.83067 -15.65772 -15.31975 -14.77929 -14.69838 -14.28565 -13.79863 -13.17813 -13.11863 -13.08289 -12.95468 -12.79741 -12.72104 -12.56660 -12.31216 -12.25990 -12.17670 -12.02744 -11.96715 -11.87041 -11.03236 -11.00527 -10.93274 -10.59799 -10.50342 -9.22169 -8.13720 -6.27035 0.54478 1.44212 1.45020 1.52691 1.66813 1.84025 2.42443 2.89588 3.15772 3.48798 3.66451 3.80427 4.03685 4.07281 4.24392 4.50389 4.56316 4.79563 4.80028 4.83533 4.89407 4.94176 5.00364 5.01657 5.08103 5.18301 5.18720 5.29691 5.40573 5.44217 5.47221 5.51196 5.64661 5.83991 6.11758 6.22095 6.35379 6.63448 6.90968 7.10587 7.42856 8.91513 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.031605 B = 0.004365 C = 0.004038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.735057 B = 6412.660497 C = 6932.889100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.217 3.783 3 H -0.017 1.017 4 C -0.540 4.540 5 H 0.055 0.945 6 C 0.019 3.981 7 N -0.914 5.914 8 Si 0.959 3.041 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.274 1.274 12 N -0.678 5.678 13 C 0.138 3.862 14 C 0.301 3.699 15 N -0.558 5.558 16 C 0.226 3.774 17 C 0.022 3.978 18 C -0.132 4.132 19 C -0.129 4.129 20 C -0.130 4.130 21 N -0.332 5.332 22 N -0.467 5.467 23 H 0.452 0.548 24 H 0.027 0.973 25 H 0.032 0.968 26 H 0.058 0.942 27 H 0.264 0.736 28 H 0.336 0.664 29 H 0.105 0.895 30 H 0.059 0.941 31 H 0.044 0.956 32 H 0.093 0.907 33 H 0.051 0.949 34 H 0.054 0.946 35 H 0.090 0.910 36 H 0.050 0.950 37 H 0.052 0.948 38 H 0.092 0.908 39 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.465 -3.472 -16.483 18.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.109 3.891 3 H 0.000 1.000 4 C -0.579 4.579 5 H 0.073 0.927 6 C -0.181 4.181 7 N -0.553 5.553 8 Si 0.784 3.216 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.199 1.199 12 N -0.310 5.310 13 C 0.007 3.993 14 C 0.021 3.979 15 N -0.288 5.288 16 C -0.057 4.057 17 C 0.019 3.981 18 C -0.190 4.190 19 C -0.187 4.187 20 C -0.188 4.188 21 N -0.161 5.161 22 N -0.186 5.186 23 H 0.299 0.701 24 H 0.046 0.954 25 H 0.050 0.950 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.153 0.847 29 H 0.123 0.877 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.112 0.888 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.109 0.891 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.111 0.889 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.891 -3.875 -16.988 18.393 hybrid contribution -0.101 0.395 1.507 1.561 sum 5.790 -3.480 -15.481 16.891 Atomic orbital electron populations 1.21570 0.97070 0.99061 0.99671 1.18969 0.93059 0.91238 0.85820 0.99975 1.21503 1.31911 1.12792 0.91663 0.92664 1.25627 0.95107 0.95622 1.01753 1.69985 1.37160 1.23826 1.24319 0.85605 0.78726 0.78652 0.78605 1.19759 1.20785 1.19885 1.60744 1.32723 1.32426 1.05152 1.20426 1.01368 0.92559 0.84994 1.24329 0.86765 0.94097 0.92668 1.70308 1.19031 1.22760 1.16697 1.24775 0.94905 0.94845 0.91127 1.19175 0.86684 0.97186 0.95058 1.21804 1.00124 0.98156 0.98924 1.21758 1.02641 0.99388 0.94895 1.21789 0.99913 0.95523 1.01569 1.77861 1.00490 1.22855 1.14896 1.47910 1.10930 1.41791 1.17954 0.70056 0.95383 0.94952 0.92276 0.92729 0.84715 0.87669 0.92348 0.93678 0.88821 0.93025 0.92718 0.89150 0.93122 0.92933 0.88912 0.93163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.38 9.19 71.98 0.66 -4.72 16 2 C 0.22 10.56 2.60 44.17 0.11 10.68 16 3 H -0.02 -0.92 7.80 -2.39 -0.02 -0.93 16 4 C -0.54 -29.13 8.59 25.60 0.22 -28.91 16 5 H 0.06 2.96 7.62 -2.91 -0.02 2.94 16 6 C 0.02 1.01 5.30 84.65 0.45 1.46 16 7 N -0.91 -51.16 11.32 21.44 0.24 -50.92 16 8 Si 0.96 42.94 29.54 68.60 2.03 44.97 16 9 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 10 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 12 N -0.68 -27.73 6.29 -499.44 -3.14 -30.87 16 13 C 0.14 4.64 6.11 85.56 0.52 5.16 16 14 C 0.30 9.72 7.75 138.23 1.07 10.79 16 15 N -0.56 -19.01 11.19 -179.73 -2.01 -21.02 16 16 C 0.23 6.87 6.36 138.63 0.88 7.75 16 17 C 0.02 0.49 0.99 -52.93 -0.05 0.44 16 18 C -0.13 -2.81 8.45 71.98 0.61 -2.20 16 19 C -0.13 -2.40 7.93 71.98 0.57 -1.83 16 20 C -0.13 -2.54 8.46 71.98 0.61 -1.93 16 21 N -0.33 -10.14 12.06 -51.34 -0.62 -10.76 16 22 N -0.47 -13.39 7.45 -50.71 -0.38 -13.77 16 23 H 0.45 10.16 8.96 -213.10 -1.91 8.25 16 24 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.03 1.28 7.45 -2.39 -0.02 1.26 16 26 H 0.06 3.07 6.07 -2.38 -0.01 3.05 16 27 H 0.26 14.07 8.31 -92.70 -0.77 13.30 16 28 H 0.34 14.38 8.22 -89.70 -0.74 13.64 16 29 H 0.11 3.11 7.44 -2.39 -0.02 3.09 16 30 H 0.06 2.03 8.06 -2.39 -0.02 2.01 16 31 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -61.97 322.24 0.18 -61.79 By element: Atomic # 1 Polarization: 25.50 SS G_CDS: -1.60 Total: 23.89 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: 5.66 Total: -3.31 kcal Atomic # 7 Polarization: -121.44 SS G_CDS: -5.91 Total: -127.35 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -61.97 0.18 -61.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591259237.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.527 kcal (2) G-P(sol) polarization free energy of solvation -61.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds