Wall clock time and date at job start Sun Mar 29 2020 22:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42894 * 109.47283 * 2 1 4 4 C 1.42900 * 114.00284 * 179.97438 * 3 2 1 5 5 H 1.09002 * 112.90594 * 341.25146 * 4 3 2 6 6 C 1.53948 * 113.66742 * 112.43799 * 4 3 2 7 7 C 1.53781 * 87.01792 * 139.93413 * 6 4 3 8 8 H 1.09005 * 113.61116 * 89.23014 * 7 6 4 9 9 N 1.46904 * 113.61651 * 220.04934 * 7 6 4 10 10 C 1.46910 * 110.99860 * 254.13685 * 9 7 6 11 11 C 1.52997 * 109.46732 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.47175 * 305.00023 * 11 10 9 13 13 C 1.47193 * 109.47450 * 65.00360 * 11 10 9 14 14 N 9.05898 * 125.64728 * 0.78508 * 2 1 3 15 15 C 1.53006 * 109.46646 * 185.00048 * 11 10 9 16 16 C 1.50699 * 109.46866 * 175.00111 * 15 11 10 17 17 H 1.08003 * 119.99962 * 359.97438 * 16 15 11 18 18 C 1.37874 * 120.00270 * 180.02562 * 16 15 11 19 19 N 1.31522 * 119.99834 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00496 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47325 * 59.99531 * 20 18 16 22 22 H 1.48496 * 109.47425 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.47183 * 299.99726 * 20 18 16 24 24 C 1.53776 * 87.17367 * 334.63946 * 7 6 4 25 25 H 1.09000 * 109.46872 * 60.00148 * 1 2 3 26 26 H 1.08994 * 109.47368 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47086 * 300.00371 * 1 2 3 28 28 H 1.09004 * 109.46708 * 239.99718 * 2 1 3 29 29 H 1.08994 * 109.46748 * 120.00231 * 2 1 3 30 30 H 1.09005 * 113.61437 * 25.41808 * 6 4 3 31 31 H 1.08998 * 113.66760 * 254.46224 * 6 4 3 32 32 H 1.00895 * 111.00260 * 130.18564 * 9 7 6 33 33 H 1.09007 * 109.46855 * 60.00151 * 10 9 7 34 34 H 1.08992 * 109.47009 * 299.99964 * 10 9 7 35 35 H 1.08993 * 109.46955 * 295.00330 * 15 11 10 36 36 H 1.09000 * 109.47050 * 55.00158 * 15 11 10 37 37 H 0.96992 * 120.00032 * 180.02562 * 19 18 16 38 38 H 1.09004 * 113.61167 * 139.93504 * 24 7 6 39 39 H 1.08999 * 113.61654 * 270.83606 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.9288 0.5458 0.3237 6 6 4.0050 2.0452 -1.3025 7 6 4.9900 2.8312 -0.4211 8 1 5.9147 2.2930 -0.2127 9 7 5.2219 4.2071 -0.8806 10 6 6.5444 4.3371 -1.5070 11 6 6.7487 5.7802 -1.9722 12 1 5.9271 6.0707 -2.6270 13 6 6.7827 6.6728 -0.8022 14 7 6.8095 7.3608 0.1009 15 6 8.0710 5.8880 -2.7344 16 6 8.2142 7.2784 -3.2976 17 1 7.4394 8.0118 -3.1291 18 6 9.3338 7.6141 -4.0288 19 7 10.2771 6.7209 -4.2344 20 14 9.5118 9.3377 -4.7263 21 1 9.4989 10.3245 -3.6168 22 1 10.7950 9.4423 -5.4662 23 1 8.3831 9.6169 -5.6502 24 6 3.9483 2.7252 0.7051 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 3.3021 2.6786 -1.8436 31 1 4.4859 1.3037 -1.9405 32 1 5.1148 4.8644 -0.1226 33 1 6.6077 3.6669 -2.3644 34 1 7.3164 4.0754 -0.7835 35 1 8.8991 5.6836 -2.0559 36 1 8.0811 5.1633 -3.5486 37 1 11.0649 6.9571 -4.7485 38 1 4.3836 2.5319 1.6856 39 1 3.2299 3.5449 0.7140 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591376647.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:12 Heat of formation + Delta-G solvation = -35.625195 kcal Electronic energy + Delta-G solvation = -17763.576265 eV Core-core repulsion = 14898.584042 eV Total energy + Delta-G solvation = -2864.992223 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.50165 -38.73424 -37.49194 -35.83855 -34.81034 -32.67077 -31.55041 -28.29725 -26.64792 -25.05629 -23.76034 -23.55104 -23.25345 -20.49546 -18.53667 -18.23475 -18.02901 -16.78968 -16.62665 -16.33031 -16.15936 -15.87046 -14.93923 -14.66998 -14.47094 -14.06176 -13.99401 -13.72762 -13.57246 -13.31273 -13.29120 -13.08147 -12.78357 -12.52960 -12.46711 -12.37934 -12.18278 -12.08578 -11.81875 -11.75725 -11.45310 -11.34982 -11.06519 -10.54963 -10.29086 -9.38543 -8.19644 -6.27912 1.41205 1.42402 1.49740 1.93535 1.95904 2.41405 2.75453 3.15287 3.24983 3.34973 3.59404 3.73552 3.92794 3.99354 4.22847 4.24748 4.33404 4.40136 4.50860 4.55037 4.69215 4.76990 4.88794 4.92774 4.95137 4.98973 5.06241 5.10100 5.23806 5.28129 5.34757 5.47015 5.63055 5.79225 6.10158 6.22733 6.33623 6.43995 6.74606 6.86864 7.40545 8.91105 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.043097 B = 0.003269 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.543495 B = 8562.971380 C = 8777.460051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.048 3.952 3 O -0.397 6.397 4 C 0.067 3.933 5 H 0.106 0.894 6 C -0.138 4.138 7 C 0.058 3.942 8 H 0.087 0.913 9 N -0.680 5.680 10 C 0.079 3.921 11 C 0.018 3.982 12 H 0.121 0.879 13 C 0.252 3.748 14 N -0.505 5.505 15 C 0.039 3.961 16 C -0.541 4.541 17 H 0.053 0.947 18 C 0.011 3.989 19 N -0.923 5.923 20 Si 0.949 3.051 21 H -0.281 1.281 22 H -0.281 1.281 23 H -0.263 1.263 24 C -0.139 4.139 25 H 0.055 0.945 26 H 0.089 0.911 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.337 0.663 33 H 0.104 0.896 34 H 0.036 0.964 35 H 0.001 0.999 36 H 0.037 0.963 37 H 0.264 0.736 38 H 0.081 0.919 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.974 -16.367 6.761 23.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.028 4.028 3 O -0.317 6.317 4 C 0.009 3.991 5 H 0.124 0.876 6 C -0.177 4.177 7 C -0.052 4.052 8 H 0.105 0.895 9 N -0.311 5.311 10 C -0.051 4.051 11 C -0.004 4.004 12 H 0.139 0.861 13 C -0.064 4.064 14 N -0.182 5.182 15 C 0.000 4.000 16 C -0.579 4.579 17 H 0.071 0.929 18 C -0.188 4.188 19 N -0.563 5.563 20 Si 0.774 3.226 21 H -0.207 1.207 22 H -0.206 1.206 23 H -0.188 1.188 24 C -0.177 4.177 25 H 0.074 0.926 26 H 0.108 0.892 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.155 0.845 33 H 0.122 0.878 34 H 0.054 0.946 35 H 0.020 0.980 36 H 0.055 0.945 37 H 0.073 0.927 38 H 0.100 0.900 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -15.228 -15.292 7.444 22.829 hybrid contribution 1.238 0.729 -0.041 1.437 sum -13.990 -14.564 7.402 21.508 Atomic orbital electron populations 1.21774 0.93343 1.03252 1.02487 1.22696 0.96129 0.83192 1.00808 1.87946 1.21269 1.27789 1.94697 1.23580 0.80814 0.97950 0.96796 0.87619 1.23569 0.98036 0.99049 0.97036 1.22827 0.96961 0.89432 0.95992 0.89510 1.60651 1.29921 1.05635 1.34913 1.21982 0.89246 0.93910 1.00009 1.19239 1.02280 0.90667 0.88207 0.86133 1.29640 0.90430 0.92868 0.93482 1.81018 1.11678 1.11232 1.14303 1.18978 0.89895 0.96488 0.94610 1.21539 1.04736 0.98427 1.33211 0.92854 1.25716 0.95688 1.00684 0.96691 1.70022 1.09515 1.35702 1.41076 0.85746 0.77841 0.80422 0.78562 1.20691 1.20649 1.18806 1.23451 0.97704 0.98469 0.98056 0.92611 0.89213 0.92455 0.92663 0.92353 0.90076 0.90444 0.84511 0.87818 0.94555 0.98041 0.94526 0.92676 0.89999 0.89838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 10.28 71.98 0.74 -1.15 16 2 C 0.05 0.69 6.50 71.98 0.47 1.16 16 3 O -0.40 -8.24 10.36 -148.98 -1.54 -9.78 16 4 C 0.07 1.19 4.31 31.18 0.13 1.32 16 5 H 0.11 1.41 7.87 -2.39 -0.02 1.39 16 6 C -0.14 -2.73 7.73 31.18 0.24 -2.49 16 7 C 0.06 1.19 4.12 45.44 0.19 1.37 16 8 H 0.09 1.62 7.88 -2.38 -0.02 1.60 16 9 N -0.68 -17.28 6.55 -488.83 -3.20 -20.48 16 10 C 0.08 2.22 4.97 86.30 0.43 2.65 16 11 C 0.02 0.65 2.42 -12.60 -0.03 0.62 16 12 H 0.12 4.16 8.14 -2.39 -0.02 4.15 16 13 C 0.25 10.11 12.98 89.44 1.16 11.27 16 14 N -0.50 -21.95 18.53 20.00 0.37 -21.58 16 15 C 0.04 1.81 4.42 29.85 0.13 1.94 16 16 C -0.54 -28.88 8.60 25.60 0.22 -28.66 16 17 H 0.05 2.82 7.59 -2.91 -0.02 2.80 16 18 C 0.01 0.62 5.46 84.65 0.46 1.08 16 19 N -0.92 -53.18 13.29 21.45 0.28 -52.89 16 20 Si 0.95 43.68 29.54 68.60 2.03 45.70 16 21 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 22 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 23 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 24 C -0.14 -2.66 7.50 31.12 0.23 -2.42 16 25 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.06 0.76 8.14 -2.39 -0.02 0.75 16 28 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 29 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 31 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.34 9.00 7.64 -89.70 -0.69 8.31 16 33 H 0.10 2.71 8.14 -2.38 -0.02 2.69 16 34 H 0.04 1.02 8.13 -2.39 -0.02 1.00 16 35 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 36 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.26 14.48 8.31 -92.71 -0.77 13.70 16 38 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 39 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -62.75 332.13 2.65 -60.10 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: 0.33 Total: 12.24 kcal Atomic # 6 Polarization: -17.69 SS G_CDS: 4.38 Total: -13.32 kcal Atomic # 7 Polarization: -92.41 SS G_CDS: -2.55 Total: -94.95 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: -1.54 Total: -9.78 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Total: -62.75 2.65 -60.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591376647.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.480 kcal (2) G-P(sol) polarization free energy of solvation -62.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds