Wall clock time and date at job start Mon Mar 30 2020 00:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48501 * 109.47418 * 270.00370 * 3 2 1 5 5 H 1.48498 * 109.47091 * 30.00431 * 3 2 1 6 6 H 1.48508 * 109.47394 * 150.00196 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47127 * 180.02562 * 10 9 7 12 12 N 1.46896 * 109.47114 * 180.02562 * 11 10 9 13 13 C 1.46904 * 111.00095 * 180.02562 * 12 11 10 14 14 H 1.08998 * 109.03440 * 36.02970 * 13 12 11 15 15 C 1.52534 * 109.04128 * 277.13430 * 13 12 11 16 16 C 1.53812 * 111.69208 * 293.53476 * 15 13 12 17 17 C 1.51628 * 107.04108 * 302.44490 * 16 15 13 18 18 H 1.09001 * 111.25541 * 304.32135 * 17 16 15 19 19 C 1.53080 * 116.61084 * 176.28707 * 17 16 15 20 20 N 1.49073 * 103.41490 * 204.04367 * 19 17 16 21 21 C 1.48645 * 108.29691 * 24.35415 * 20 19 17 22 22 C 1.52340 * 105.84004 * 3.20353 * 21 20 19 23 23 H 1.08998 * 109.87247 * 88.10582 * 22 21 20 24 24 C 1.51448 * 117.40769 * 214.58404 * 22 21 20 25 25 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 27 27 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 28 28 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 29 29 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 30 30 H 1.08996 * 109.46952 * 300.00302 * 11 10 9 31 31 H 1.09001 * 109.46832 * 60.00321 * 11 10 9 32 32 H 1.00907 * 110.99931 * 303.95289 * 12 11 10 33 33 H 1.08991 * 109.03620 * 54.10581 * 15 13 12 34 34 H 1.08997 * 109.03102 * 172.96656 * 15 13 12 35 35 H 1.09005 * 109.93340 * 183.06238 * 16 15 13 36 36 H 1.09002 * 110.00718 * 61.87062 * 16 15 13 37 37 H 1.09001 * 110.63173 * 85.56784 * 19 17 16 38 38 H 1.09001 * 110.77080 * 322.59483 * 19 17 16 39 39 H 1.00894 * 111.00039 * 262.26086 * 20 19 17 40 40 H 1.09003 * 110.18153 * 244.10984 * 21 20 19 41 41 H 1.09006 * 110.24265 * 122.32882 * 21 20 19 42 42 H 1.08993 * 109.93846 * 59.45548 * 24 22 21 43 43 H 1.09003 * 109.93179 * 298.22726 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4805 -4.9871 -0.0012 12 7 2.4351 -6.1036 -0.0006 13 6 1.7348 -7.3950 -0.0018 14 1 0.8335 -7.3101 -0.6088 15 6 1.3387 -7.7476 1.4284 16 6 2.5704 -8.0137 2.3104 17 6 3.3524 -9.1352 1.6548 18 1 2.7292 -10.0170 1.5061 19 6 4.6803 -9.5203 2.3118 20 7 5.4503 -10.1419 1.1969 21 6 4.9228 -9.6111 -0.0874 22 6 3.8616 -8.5857 0.2911 23 1 4.3231 -7.6076 0.4266 24 6 2.6547 -8.4643 -0.6157 25 1 -0.4851 0.8400 0.0004 26 1 0.6242 -2.5567 -0.8904 27 1 0.6248 -2.5571 0.8896 28 1 2.8721 -3.6042 -0.8905 29 1 2.8721 -3.6043 0.8895 30 1 0.8535 -5.0450 0.8885 31 1 0.8542 -5.0446 -0.8914 32 1 3.0705 -6.0364 -0.7815 33 1 0.7689 -6.9214 1.8534 34 1 0.7123 -8.6395 1.4141 35 1 2.2543 -8.3151 3.3090 36 1 3.1867 -7.1166 2.3707 37 1 4.5174 -10.2401 3.1141 38 1 5.1956 -8.6369 2.6888 39 1 5.3823 -11.1481 1.2275 40 1 4.4766 -10.4156 -0.6719 41 1 5.7217 -9.1333 -0.6546 42 1 2.1316 -9.4191 -0.6680 43 1 2.9687 -8.1563 -1.6130 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592470789.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:05:02 Heat of formation + Delta-G solvation = -23.751198 kcal Electronic energy + Delta-G solvation = -18926.229989 eV Core-core repulsion = 16197.585755 eV Total energy + Delta-G solvation = -2728.644233 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.28222 -36.97168 -34.48800 -32.89986 -31.75361 -30.57910 -28.66247 -27.33593 -25.57484 -23.26724 -22.47068 -21.02626 -20.81564 -20.05905 -19.31518 -16.45786 -16.29266 -15.60874 -15.32107 -14.74232 -14.54896 -14.36135 -14.27028 -13.76210 -13.12978 -12.87492 -12.57594 -12.35176 -12.13502 -12.00599 -11.82843 -11.72310 -11.41398 -11.18581 -10.88659 -10.82978 -10.66033 -10.54749 -10.44520 -10.22498 -9.92990 -9.65279 -9.30050 -9.02634 -8.66677 -8.32352 -8.10282 -5.97496 -3.99484 3.33770 3.39814 3.43853 4.01019 4.25495 4.37823 4.49784 4.56837 4.76139 4.95705 5.08872 5.23672 5.24992 5.35630 5.38312 5.42053 5.43189 5.57332 5.63201 5.72418 5.75348 5.81990 5.83829 5.95110 5.98938 6.10154 6.17884 6.23086 6.30587 6.39158 6.51181 6.55906 6.75141 6.82448 7.15274 7.16824 7.40095 7.67732 7.71351 7.86452 8.03150 8.46615 9.07862 9.64462 11.13991 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.037164 B = 0.003600 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.235735 B = 7774.912077 C = 7983.048089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.106 4.106 11 C 0.059 3.941 12 N -0.683 5.683 13 C 0.087 3.913 14 H 0.039 0.961 15 C -0.104 4.104 16 C -0.094 4.094 17 C -0.121 4.121 18 H 0.067 0.933 19 C 0.052 3.948 20 N -0.688 5.688 21 C 0.052 3.948 22 C -0.107 4.107 23 H 0.095 0.905 24 C -0.104 4.104 25 H 0.260 0.740 26 H 0.013 0.987 27 H 0.015 0.985 28 H 0.044 0.956 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.022 0.978 32 H 0.336 0.664 33 H 0.065 0.935 34 H 0.052 0.948 35 H 0.054 0.946 36 H 0.080 0.920 37 H 0.063 0.937 38 H 0.080 0.920 39 H 0.334 0.666 40 H 0.047 0.953 41 H 0.075 0.925 42 H 0.064 0.936 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.497 -21.660 1.420 22.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.556 4.556 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.144 4.144 11 C -0.069 4.069 12 N -0.315 5.315 13 C -0.023 4.023 14 H 0.057 0.943 15 C -0.142 4.142 16 C -0.132 4.132 17 C -0.140 4.140 18 H 0.086 0.914 19 C -0.076 4.076 20 N -0.315 5.315 21 C -0.077 4.077 22 C -0.127 4.127 23 H 0.114 0.886 24 C -0.143 4.143 25 H 0.069 0.931 26 H 0.031 0.969 27 H 0.034 0.966 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.040 0.960 32 H 0.154 0.846 33 H 0.084 0.916 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.099 0.901 37 H 0.082 0.918 38 H 0.099 0.901 39 H 0.148 0.852 40 H 0.065 0.935 41 H 0.093 0.907 42 H 0.082 0.918 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.006 -21.099 2.143 22.041 hybrid contribution -0.919 0.456 -1.074 1.486 sum 5.086 -20.643 1.068 21.287 Atomic orbital electron populations 1.69964 1.06068 1.26534 1.51105 1.25031 0.94847 0.99266 0.95408 0.86598 0.79892 0.83479 0.78061 1.20717 1.21249 1.19830 1.21266 0.93056 0.91080 1.50242 0.92683 1.19061 0.94025 0.91434 0.97028 1.21609 0.99125 0.93035 1.00630 1.22163 0.94158 0.90907 0.99690 1.60635 1.20150 1.01036 1.49670 1.21539 0.95151 0.89715 0.95874 0.94323 1.21501 0.97393 1.00585 0.94761 1.21177 0.96801 0.98089 0.97174 1.22477 0.96572 0.98294 0.96680 0.91446 1.22674 0.91972 0.99835 0.93149 1.62448 1.56208 1.10625 1.02223 1.22374 0.96565 0.97125 0.91651 1.21988 0.94793 1.00514 0.95358 0.88625 1.21491 0.95740 0.98759 0.98266 0.93062 0.96902 0.96647 0.93764 0.92609 0.91590 0.95978 0.84584 0.91641 0.92886 0.92698 0.90095 0.91829 0.90139 0.85173 0.93468 0.90673 0.91782 0.91813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.35 13.29 55.43 0.74 -26.62 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 7 C -0.52 -14.95 9.11 -34.44 -0.31 -15.26 16 8 H 0.05 1.55 7.74 -52.48 -0.41 1.14 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.11 -2.21 5.41 -26.73 -0.14 -2.36 16 11 C 0.06 1.02 5.47 -3.83 -0.02 1.00 16 12 N -0.68 -9.55 5.11 -106.52 -0.54 -10.10 16 13 C 0.09 1.03 2.74 -67.51 -0.19 0.85 16 14 H 0.04 0.49 7.79 -51.93 -0.40 0.08 16 15 C -0.10 -1.20 5.40 -26.55 -0.14 -1.34 16 16 C -0.09 -1.02 5.57 -27.00 -0.15 -1.17 16 17 C -0.12 -1.16 2.48 -89.89 -0.22 -1.38 16 18 H 0.07 0.63 8.04 -51.93 -0.42 0.22 16 19 C 0.05 0.49 7.22 -2.57 -0.02 0.47 16 20 N -0.69 -6.51 7.48 -111.08 -0.83 -7.34 16 21 C 0.05 0.48 7.30 -3.19 -0.02 0.46 16 22 C -0.11 -1.08 2.24 -90.36 -0.20 -1.28 16 23 H 0.10 1.16 7.14 -51.93 -0.37 0.79 16 24 C -0.10 -1.03 5.09 -27.08 -0.14 -1.16 16 25 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 26 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 30 H 0.07 1.17 7.15 -51.93 -0.37 0.80 16 31 H 0.02 0.39 8.05 -51.93 -0.42 -0.03 16 32 H 0.34 4.52 8.23 -39.29 -0.32 4.19 16 33 H 0.06 0.85 7.11 -51.93 -0.37 0.48 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.08 1.03 7.86 -51.93 -0.41 0.63 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.33 2.59 8.93 -39.29 -0.35 2.24 16 40 H 0.05 0.39 8.08 -51.93 -0.42 -0.03 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.58 8.04 -51.93 -0.42 0.16 16 43 H 0.06 0.61 8.05 -51.93 -0.42 0.19 16 LS Contribution 328.99 15.07 4.96 4.96 Total: -1.00 -29.80 328.99 -10.54 -40.34 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -8.03 Total: 1.03 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: -1.80 Total: -19.22 kcal Atomic # 7 Polarization: -43.41 SS G_CDS: -0.64 Total: -44.05 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.80 -10.54 -40.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592470789.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.589 kcal (2) G-P(sol) polarization free energy of solvation -29.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds