Wall clock time and date at job start Mon Mar 30 2020 00:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48501 * 109.47418 * 270.00370 * 3 2 1 5 5 H 1.48498 * 109.47091 * 30.00431 * 3 2 1 6 6 H 1.48508 * 109.47394 * 150.00196 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47127 * 180.02562 * 10 9 7 12 12 N 1.46896 * 109.47114 * 180.02562 * 11 10 9 13 13 C 1.46904 * 111.00095 * 180.02562 * 12 11 10 14 14 H 1.08998 * 109.03440 * 36.02970 * 13 12 11 15 15 C 1.52534 * 109.04128 * 277.13430 * 13 12 11 16 16 C 1.53812 * 111.69208 * 293.53476 * 15 13 12 17 17 C 1.51628 * 107.04108 * 302.44490 * 16 15 13 18 18 H 1.09001 * 111.25541 * 304.32135 * 17 16 15 19 19 C 1.53080 * 116.61084 * 176.28707 * 17 16 15 20 20 N 1.49073 * 103.41490 * 204.04367 * 19 17 16 21 21 C 1.48645 * 108.29691 * 24.35415 * 20 19 17 22 22 C 1.52340 * 105.84004 * 3.20353 * 21 20 19 23 23 H 1.08998 * 109.87247 * 88.10582 * 22 21 20 24 24 C 1.51448 * 117.40769 * 214.58404 * 22 21 20 25 25 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 27 27 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 28 28 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 29 29 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 30 30 H 1.08996 * 109.46952 * 300.00302 * 11 10 9 31 31 H 1.09001 * 109.46832 * 60.00321 * 11 10 9 32 32 H 1.00907 * 110.99931 * 303.95289 * 12 11 10 33 33 H 1.08991 * 109.03620 * 54.10581 * 15 13 12 34 34 H 1.08997 * 109.03102 * 172.96656 * 15 13 12 35 35 H 1.09005 * 109.93340 * 183.06238 * 16 15 13 36 36 H 1.09002 * 110.00718 * 61.87062 * 16 15 13 37 37 H 1.09001 * 110.63173 * 85.56784 * 19 17 16 38 38 H 1.09001 * 110.77080 * 322.59483 * 19 17 16 39 39 H 1.00894 * 111.00039 * 262.26086 * 20 19 17 40 40 H 1.09003 * 110.18153 * 244.10984 * 21 20 19 41 41 H 1.09006 * 110.24265 * 122.32882 * 21 20 19 42 42 H 1.08993 * 109.93846 * 59.45548 * 24 22 21 43 43 H 1.09003 * 109.93179 * 298.22726 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4805 -4.9871 -0.0012 12 7 2.4351 -6.1036 -0.0006 13 6 1.7348 -7.3950 -0.0018 14 1 0.8335 -7.3101 -0.6088 15 6 1.3387 -7.7476 1.4284 16 6 2.5704 -8.0137 2.3104 17 6 3.3524 -9.1352 1.6548 18 1 2.7292 -10.0170 1.5061 19 6 4.6803 -9.5203 2.3118 20 7 5.4503 -10.1419 1.1969 21 6 4.9228 -9.6111 -0.0874 22 6 3.8616 -8.5857 0.2911 23 1 4.3231 -7.6076 0.4266 24 6 2.6547 -8.4643 -0.6157 25 1 -0.4851 0.8400 0.0004 26 1 0.6242 -2.5567 -0.8904 27 1 0.6248 -2.5571 0.8896 28 1 2.8721 -3.6042 -0.8905 29 1 2.8721 -3.6043 0.8895 30 1 0.8535 -5.0450 0.8885 31 1 0.8542 -5.0446 -0.8914 32 1 3.0705 -6.0364 -0.7815 33 1 0.7689 -6.9214 1.8534 34 1 0.7123 -8.6395 1.4141 35 1 2.2543 -8.3151 3.3090 36 1 3.1867 -7.1166 2.3707 37 1 4.5174 -10.2401 3.1141 38 1 5.1956 -8.6369 2.6888 39 1 5.3823 -11.1481 1.2275 40 1 4.4766 -10.4156 -0.6719 41 1 5.7217 -9.1333 -0.6546 42 1 2.1316 -9.4191 -0.6680 43 1 2.9687 -8.1563 -1.6130 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592470789.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:05:02 Heat of formation + Delta-G solvation = -43.348454 kcal Electronic energy + Delta-G solvation = -18927.079789 eV Core-core repulsion = 16197.585755 eV Total energy + Delta-G solvation = -2729.494034 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.12446 -38.06176 -36.08655 -34.57270 -32.93333 -31.91081 -29.73483 -28.40080 -27.20299 -24.30126 -24.09432 -21.96888 -21.71821 -21.61498 -20.25129 -18.48797 -17.30034 -16.72405 -16.55116 -16.26039 -15.70975 -15.58620 -15.19689 -15.09340 -14.33576 -14.19876 -13.75682 -13.52606 -13.38101 -13.35564 -12.95663 -12.83737 -12.74049 -12.61512 -12.42937 -12.33577 -11.99425 -11.73186 -11.60503 -11.49134 -11.37590 -11.16896 -10.97086 -10.74742 -10.56393 -9.38146 -9.28534 -8.21124 -6.32348 1.39310 1.40919 1.52360 2.40371 3.11860 3.21233 3.32987 3.48135 3.75579 3.88339 4.12140 4.20638 4.27937 4.31544 4.45688 4.49272 4.57931 4.61486 4.69532 4.71981 4.76232 4.79998 4.88872 4.95326 4.97466 5.04365 5.09519 5.19403 5.23612 5.24389 5.31007 5.38460 5.44912 5.51495 5.67490 5.74268 5.83442 5.84924 6.12841 6.27459 6.53161 6.55107 6.84629 7.37005 8.90877 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.037164 B = 0.003600 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.235735 B = 7774.912077 C = 7983.048089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.966 3.034 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.544 4.544 8 H 0.059 0.941 9 C 0.026 3.974 10 C -0.091 4.091 11 C 0.075 3.925 12 N -0.680 5.680 13 C 0.086 3.914 14 H 0.035 0.965 15 C -0.104 4.104 16 C -0.090 4.090 17 C -0.113 4.113 18 H 0.080 0.920 19 C 0.054 3.946 20 N -0.697 5.697 21 C 0.055 3.945 22 C -0.104 4.104 23 H 0.071 0.929 24 C -0.096 4.096 25 H 0.264 0.736 26 H -0.010 1.010 27 H -0.010 1.010 28 H 0.049 0.951 29 H 0.050 0.950 30 H 0.058 0.942 31 H 0.019 0.981 32 H 0.341 0.659 33 H 0.044 0.956 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.056 0.944 37 H 0.080 0.920 38 H 0.063 0.937 39 H 0.345 0.655 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.081 0.919 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.497 -22.909 1.187 23.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.790 3.210 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.582 4.582 8 H 0.077 0.923 9 C -0.012 4.012 10 C -0.129 4.129 11 C -0.054 4.054 12 N -0.312 5.312 13 C -0.024 4.024 14 H 0.053 0.947 15 C -0.142 4.142 16 C -0.129 4.129 17 C -0.133 4.133 18 H 0.098 0.902 19 C -0.075 4.075 20 N -0.326 5.326 21 C -0.074 4.074 22 C -0.124 4.124 23 H 0.090 0.910 24 C -0.134 4.134 25 H 0.073 0.927 26 H 0.008 0.992 27 H 0.008 0.992 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.037 0.963 32 H 0.160 0.840 33 H 0.063 0.937 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.098 0.902 38 H 0.082 0.918 39 H 0.161 0.839 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.100 0.900 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.019 -22.374 1.907 23.527 hybrid contribution -1.250 0.815 -0.986 1.788 sum 5.770 -21.560 0.921 22.337 Atomic orbital electron populations 1.70095 1.07821 1.27797 1.51744 1.26004 0.95802 1.03444 0.94692 0.85430 0.78653 0.78312 0.78556 1.19652 1.20637 1.18778 1.21703 0.93522 0.92446 1.50485 0.92300 1.18964 0.94415 0.93197 0.94604 1.21355 0.97930 0.93036 1.00543 1.21828 0.94004 0.90411 0.99189 1.60560 1.19533 1.01121 1.50034 1.21637 0.95330 0.89061 0.96346 0.94734 1.21506 0.97700 1.00609 0.94420 1.21099 0.96309 0.97671 0.97777 1.22413 0.96641 0.98040 0.96164 0.90184 1.22624 0.91505 0.99710 0.93635 1.62383 1.56445 1.11571 1.02207 1.22326 0.96058 0.97288 0.91743 1.21901 0.95000 0.99642 0.95821 0.91025 1.21433 0.95153 0.98625 0.98164 0.92746 0.99194 0.99195 0.93223 0.93105 0.92394 0.96288 0.84008 0.93676 0.91030 0.91798 0.92511 0.90187 0.91814 0.83871 0.91791 0.91386 0.90006 0.91280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.92 13.29 21.45 0.28 -57.63 16 2 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 3 Si 0.97 45.06 29.54 68.60 2.03 47.08 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.54 -31.83 9.11 25.60 0.23 -31.60 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 9 C 0.03 1.40 4.97 29.85 0.15 1.55 16 10 C -0.09 -3.85 5.41 30.60 0.17 -3.68 16 11 C 0.07 2.61 5.47 86.30 0.47 3.08 16 12 N -0.68 -18.82 5.11 -490.92 -2.51 -21.33 16 13 C 0.09 1.94 2.74 45.04 0.12 2.06 16 14 H 0.03 0.83 7.79 -2.39 -0.02 0.81 16 15 C -0.10 -2.28 5.40 30.71 0.17 -2.12 16 16 C -0.09 -1.87 5.57 30.42 0.17 -1.70 16 17 C -0.11 -1.94 2.48 -10.32 -0.03 -1.97 16 18 H 0.08 1.23 8.04 -2.39 -0.02 1.22 16 19 C 0.05 0.92 7.22 85.91 0.62 1.54 16 20 N -0.70 -11.77 7.48 -505.34 -3.78 -15.55 16 21 C 0.05 0.90 7.30 85.75 0.63 1.53 16 22 C -0.10 -1.92 2.24 -10.63 -0.02 -1.94 16 23 H 0.07 1.69 7.14 -2.39 -0.02 1.67 16 24 C -0.10 -1.67 5.09 30.37 0.15 -1.51 16 25 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 26 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 27 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 28 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.06 2.11 7.15 -2.39 -0.02 2.10 16 31 H 0.02 0.67 8.05 -2.39 -0.02 0.65 16 32 H 0.34 8.93 8.23 -89.69 -0.74 8.19 16 33 H 0.04 1.17 7.11 -2.39 -0.02 1.15 16 34 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 36 H 0.06 1.46 7.86 -2.39 -0.02 1.44 16 37 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.35 4.45 8.93 -89.70 -0.80 3.65 16 40 H 0.06 0.85 8.08 -2.39 -0.02 0.83 16 41 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 42 H 0.08 1.20 8.04 -2.39 -0.02 1.18 16 43 H 0.07 1.16 8.05 -2.39 -0.02 1.14 16 Total: -1.00 -64.34 328.99 -1.26 -65.60 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -0.57 Total: 16.24 kcal Atomic # 6 Polarization: -37.71 SS G_CDS: 3.29 Total: -34.41 kcal Atomic # 7 Polarization: -88.51 SS G_CDS: -6.00 Total: -94.51 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.08 kcal Total: -64.34 -1.26 -65.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592470789.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.253 kcal (2) G-P(sol) polarization free energy of solvation -64.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds