Wall clock time and date at job start Sun Mar 29 2020 23:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46907 * 109.46792 * 2 1 4 4 C 1.46907 * 110.99570 * 160.28888 * 3 2 1 5 5 C 1.53003 * 109.47146 * 287.97499 * 4 3 2 6 6 C 1.46893 * 110.99961 * 284.24169 * 3 2 1 7 7 C 1.53006 * 109.47156 * 170.00179 * 6 3 2 8 8 N 1.46500 * 109.47366 * 180.02562 * 7 6 3 9 9 C 1.35307 * 125.86750 * 125.32543 * 8 7 6 10 10 C 1.35350 * 106.17534 * 180.11635 * 9 8 7 11 11 C 1.50704 * 126.75215 * 179.85203 * 10 9 8 12 12 C 1.50699 * 109.46869 * 124.71501 * 11 10 9 13 13 H 1.08004 * 119.99971 * 359.97438 * 12 11 10 14 14 C 1.37873 * 119.99913 * 179.72679 * 12 11 10 15 15 N 1.31517 * 120.00000 * 0.26857 * 14 12 11 16 16 Si 1.86799 * 120.00186 * 180.27532 * 14 12 11 17 17 H 1.48509 * 109.47139 * 89.99966 * 16 14 12 18 18 H 1.48504 * 109.47359 * 209.99691 * 16 14 12 19 19 H 1.48501 * 109.46985 * 330.00036 * 16 14 12 20 20 N 1.33769 * 106.49535 * 359.59284 * 10 9 8 21 21 N 1.28640 * 108.88679 * 0.26026 * 20 10 9 22 22 H 1.08996 * 109.47396 * 65.49961 * 1 2 3 23 23 H 1.09002 * 109.46770 * 185.50607 * 1 2 3 24 24 H 1.09008 * 109.46812 * 305.50102 * 1 2 3 25 25 H 1.09002 * 109.47106 * 240.00250 * 2 1 3 26 26 H 1.08994 * 109.47333 * 119.99703 * 2 1 3 27 27 H 1.09000 * 109.47051 * 47.97699 * 4 3 2 28 28 H 1.08994 * 109.46777 * 167.97279 * 4 3 2 29 29 H 1.08993 * 109.47022 * 299.17139 * 5 4 3 30 30 H 1.09002 * 109.46974 * 59.17495 * 5 4 3 31 31 H 1.09000 * 109.46566 * 179.17002 * 5 4 3 32 32 H 1.09002 * 109.47183 * 50.00293 * 6 3 2 33 33 H 1.08999 * 109.47599 * 289.99878 * 6 3 2 34 34 H 1.09002 * 109.46982 * 59.99990 * 7 6 3 35 35 H 1.08999 * 109.46621 * 300.00298 * 7 6 3 36 36 H 1.07997 * 126.91401 * 359.97438 * 9 8 7 37 37 H 1.08996 * 109.46827 * 4.71661 * 11 10 9 38 38 H 1.08998 * 109.46801 * 244.71088 * 11 10 9 39 39 H 0.96999 * 120.00370 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4124 1.4510 0.4626 5 6 3.4627 1.1863 1.9687 6 6 1.8770 1.9938 -1.3292 7 6 2.1587 3.4948 -1.2357 8 7 2.0159 4.1021 -2.5612 9 6 1.2179 5.1499 -2.8714 10 6 1.3914 5.3773 -4.1943 11 6 0.7184 6.4417 -5.0222 12 6 1.7650 7.2783 -5.7119 13 1 2.8128 7.0612 -5.5650 14 6 1.3850 8.3175 -6.5343 15 7 0.1091 8.5820 -6.7128 16 14 2.6821 9.3497 -7.3953 17 1 2.9971 8.7480 -8.7160 18 1 2.1681 10.7293 -7.5899 19 1 3.9124 9.3923 -6.5647 20 7 2.2822 4.4753 -4.6211 21 7 2.6326 3.7346 -3.6295 22 1 -0.3634 0.4261 -0.9351 23 1 -0.3633 -1.0230 0.0986 24 1 -0.3633 0.5968 0.8367 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 4.0044 0.6986 -0.0586 28 1 3.8180 2.4409 0.2539 29 1 2.8828 1.9472 2.4909 30 1 3.0436 0.2022 2.1788 31 1 4.4976 1.2206 2.3092 32 1 0.8618 1.8367 -1.6938 33 1 2.5856 1.5335 -2.0177 34 1 3.1739 3.6519 -0.8711 35 1 1.4501 3.9552 -0.5472 36 1 0.5709 5.6938 -2.1991 37 1 0.1138 7.0771 -4.3751 38 1 0.0794 5.9709 -5.7692 39 1 -0.1584 9.3134 -7.2912 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594645166.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:55:24 Heat of formation + Delta-G solvation = 92.841637 kcal Electronic energy + Delta-G solvation = -18155.610640 eV Core-core repulsion = 15328.481908 eV Total energy + Delta-G solvation = -2827.128732 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.49338 -38.64349 -34.72860 -33.18129 -32.17829 -31.05005 -30.74164 -27.99256 -27.16409 -24.00454 -23.35791 -23.31750 -21.17422 -20.83359 -19.80217 -17.06496 -16.37275 -16.14507 -15.88744 -15.23979 -14.82951 -14.53479 -14.23893 -14.17866 -13.83894 -12.95143 -12.68711 -12.48180 -12.38828 -12.17829 -11.94955 -11.86192 -11.76338 -11.60195 -11.05770 -10.99807 -10.91645 -10.71641 -10.61696 -10.05872 -9.68041 -9.41308 -9.25765 -8.72992 -8.41576 -8.10582 -5.97011 -3.97470 2.23972 2.70548 3.38496 3.43032 3.46303 3.54140 3.64054 4.48783 4.50805 4.53585 4.59927 4.84181 4.88048 5.05368 5.09394 5.16961 5.21510 5.28056 5.32374 5.39785 5.42651 5.53993 5.62642 5.65420 5.72625 5.88074 5.91113 5.96320 6.10631 6.34435 6.64399 6.70268 7.15531 7.22221 7.55468 7.64908 8.00892 8.39681 9.06001 9.32887 9.65266 11.14146 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.045500 B = 0.003607 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.236321 B = 7761.237488 C = 8052.443117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.049 3.951 3 N -0.537 5.537 4 C 0.041 3.959 5 C -0.147 4.147 6 C 0.043 3.957 7 C 0.125 3.875 8 N -0.304 5.304 9 C -0.079 4.079 10 C 0.033 3.967 11 C 0.092 3.908 12 C -0.503 4.503 13 H 0.059 0.941 14 C 0.056 3.944 15 N -0.899 5.899 16 Si 0.897 3.103 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.274 1.274 20 N -0.261 5.261 21 N -0.112 5.112 22 H 0.054 0.946 23 H 0.058 0.942 24 H 0.064 0.936 25 H 0.037 0.963 26 H 0.077 0.923 27 H 0.037 0.963 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.085 0.915 33 H 0.054 0.946 34 H 0.090 0.910 35 H 0.108 0.892 36 H 0.182 0.818 37 H 0.037 0.963 38 H 0.039 0.961 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.985 -15.204 18.176 23.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.078 4.078 3 N -0.262 5.262 4 C -0.087 4.087 5 C -0.204 4.204 6 C -0.086 4.086 7 C 0.003 3.997 8 N -0.100 5.100 9 C -0.228 4.228 10 C -0.104 4.104 11 C 0.053 3.947 12 C -0.542 4.542 13 H 0.077 0.923 14 C -0.144 4.144 15 N -0.538 5.538 16 Si 0.725 3.275 17 H -0.206 1.206 18 H -0.213 1.213 19 H -0.199 1.199 20 N -0.128 5.128 21 N -0.091 5.091 22 H 0.073 0.927 23 H 0.077 0.923 24 H 0.083 0.917 25 H 0.055 0.945 26 H 0.096 0.904 27 H 0.056 0.944 28 H 0.096 0.904 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.103 0.897 33 H 0.072 0.928 34 H 0.109 0.891 35 H 0.126 0.874 36 H 0.199 0.801 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.602 -15.821 17.830 23.979 hybrid contribution 0.390 0.885 -0.416 1.053 sum 2.991 -14.935 17.414 23.136 Atomic orbital electron populations 1.21787 0.94654 1.01587 1.02606 1.22129 0.96406 0.88217 1.01088 1.62004 1.20629 1.18664 1.24912 1.22229 0.88380 1.01728 0.96368 1.21785 1.01545 1.02080 0.95008 1.22315 1.03096 0.92948 0.90210 1.21841 1.04297 0.93952 0.79629 1.47103 1.29934 1.23326 1.09647 1.23387 1.04030 0.96351 0.99020 1.23033 0.96971 0.98234 0.92137 1.17725 0.94965 0.88625 0.93338 1.21054 0.92975 1.13159 1.26979 0.92305 1.24972 0.95397 0.97448 0.96614 1.69946 1.14737 1.30612 1.38544 0.86511 0.81707 0.79242 0.80075 1.20565 1.21297 1.19942 1.75069 1.12644 1.05174 1.19956 1.78159 1.19191 1.22593 0.89120 0.92713 0.92307 0.91675 0.94458 0.90436 0.94420 0.90437 0.91765 0.92711 0.92267 0.89695 0.92780 0.89141 0.87409 0.80102 0.94526 0.94322 0.92930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.94 37.16 0.37 -0.75 16 2 C 0.05 0.39 5.55 -3.82 -0.02 0.37 16 3 N -0.54 -4.74 4.39 -234.62 -1.03 -5.77 16 4 C 0.04 0.32 5.55 -3.82 -0.02 0.30 16 5 C -0.15 -0.95 9.99 37.16 0.37 -0.58 16 6 C 0.04 0.46 4.91 -3.82 -0.02 0.44 16 7 C 0.13 1.44 6.42 -4.04 -0.03 1.41 16 8 N -0.30 -5.13 3.44 -61.26 -0.21 -5.34 16 9 C -0.08 -1.46 11.49 -17.05 -0.20 -1.66 16 10 C 0.03 0.78 6.44 -82.78 -0.53 0.25 16 11 C 0.09 2.44 5.55 -29.03 -0.16 2.28 16 12 C -0.50 -14.69 9.09 -34.44 -0.31 -15.00 16 13 H 0.06 1.76 7.74 -52.48 -0.41 1.35 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 15 N -0.90 -26.85 13.29 55.43 0.74 -26.12 16 16 Si 0.90 22.30 29.54 -169.99 -5.02 17.28 16 17 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 20 N -0.26 -6.33 12.40 33.29 0.41 -5.91 16 21 N -0.11 -2.31 12.92 60.35 0.78 -1.53 16 22 H 0.05 0.47 6.97 -51.93 -0.36 0.10 16 23 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 25 H 0.04 0.31 8.00 -51.93 -0.42 -0.10 16 26 H 0.08 0.53 6.24 -51.93 -0.32 0.20 16 27 H 0.04 0.31 8.05 -51.93 -0.42 -0.11 16 28 H 0.08 0.61 5.94 -51.93 -0.31 0.31 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.34 6.52 -51.93 -0.34 0.00 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 0.97 6.72 -51.93 -0.35 0.62 16 33 H 0.05 0.66 8.10 -51.93 -0.42 0.24 16 34 H 0.09 0.95 6.28 -51.93 -0.33 0.62 16 35 H 0.11 1.02 8.07 -51.93 -0.42 0.60 16 36 H 0.18 2.66 8.06 -52.49 -0.42 2.24 16 37 H 0.04 0.96 8.12 -51.93 -0.42 0.53 16 38 H 0.04 1.09 8.14 -51.93 -0.42 0.66 16 39 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 321.50 15.07 4.84 4.84 Total: -1.00 -32.83 321.50 -6.32 -39.14 By element: Atomic # 1 Polarization: 0.98 SS G_CDS: -6.18 Total: -5.20 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: -0.65 Total: -11.41 kcal Atomic # 7 Polarization: -45.35 SS G_CDS: 0.69 Total: -44.66 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.83 -6.32 -39.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594645166.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.986 kcal (2) G-P(sol) polarization free energy of solvation -32.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds