Wall clock time and date at job start Sun Mar 29 2020 23:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99511 * 2 1 3 5 5 C 1.52992 * 109.47482 * 239.99653 * 2 1 3 6 6 H 1.09002 * 109.47103 * 300.00247 * 5 2 1 7 7 N 1.46901 * 109.47859 * 179.97438 * 5 2 1 8 8 C 1.50708 * 109.47025 * 59.99816 * 5 2 1 9 9 C 1.35348 * 126.74845 * 125.00147 * 8 5 2 10 10 N 1.35312 * 106.17600 * 180.02562 * 9 8 5 11 11 C 1.46499 * 125.87312 * 179.97438 * 10 9 8 12 12 C 1.52996 * 109.47042 * 124.99851 * 11 10 9 13 13 C 1.50709 * 109.47192 * 180.02562 * 12 11 10 14 14 H 1.07992 * 119.99470 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99770 * 180.02562 * 13 12 11 16 16 N 1.31512 * 119.99441 * 179.97438 * 15 13 12 17 17 Si 1.86797 * 120.00245 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.47188 * 90.00373 * 17 15 13 19 19 H 1.48507 * 109.47089 * 210.00369 * 17 15 13 20 20 H 1.48501 * 109.47378 * 329.99964 * 17 15 13 21 21 N 1.28714 * 108.26361 * 359.97438 * 10 9 8 22 22 N 1.28645 * 110.17475 * 359.72020 * 21 10 9 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 26 26 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 27 27 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 29 29 H 1.09002 * 109.46716 * 60.00091 * 4 2 1 30 30 H 1.09000 * 109.47486 * 180.02562 * 4 2 1 31 31 H 1.09001 * 109.47362 * 300.00732 * 4 2 1 32 32 H 1.00907 * 110.99587 * 300.00993 * 7 5 2 33 33 H 1.00900 * 110.99903 * 63.94751 * 7 5 2 34 34 H 1.08008 * 126.91446 * 359.96668 * 9 8 5 35 35 H 1.08998 * 109.47685 * 245.00184 * 11 10 9 36 36 H 1.09007 * 109.46897 * 5.00339 * 11 10 9 37 37 H 1.09001 * 109.47602 * 300.00049 * 12 11 10 38 38 H 1.09000 * 109.47360 * 60.00017 * 12 11 10 39 39 H 0.97007 * 119.99984 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 2.0400 -0.7213 -1.2491 6 1 1.6767 -1.7489 -1.2491 7 7 3.5091 -0.7208 -1.2495 8 6 1.5377 -0.0109 -2.4797 9 6 2.2863 0.4690 -3.5000 10 7 1.4175 1.0235 -4.3767 11 6 1.7712 1.6730 -5.6414 12 6 0.9972 1.0159 -6.7859 13 6 1.3614 1.6836 -8.0871 14 1 2.0734 2.4955 -8.0964 15 6 0.7849 1.2584 -9.2651 16 7 1.1024 1.8414 -10.4004 17 14 -0.4471 -0.1456 -9.2486 18 1 -1.8162 0.3993 -9.0651 19 1 -0.3759 -0.8819 -10.5364 20 1 -0.1285 -1.0707 -8.1314 21 7 0.2269 0.8824 -3.9086 22 7 0.2638 0.2638 -2.7813 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.6767 1.9563 0.8899 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 -1.7488 1.2493 30 1 3.1300 -0.7207 1.2495 31 1 1.6766 -0.2073 2.1393 32 1 3.8703 0.2214 -1.2496 33 1 3.8710 -1.2465 -0.4681 34 1 3.3611 0.4201 -3.5949 35 1 1.5155 2.7313 -5.5904 36 1 2.8415 1.5658 -5.8180 37 1 1.2529 -0.0424 -6.8371 38 1 -0.0731 1.1230 -6.6094 39 1 0.6971 1.5420 -11.2293 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594649620.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:40:54 Heat of formation + Delta-G solvation = 81.808263 kcal Electronic energy + Delta-G solvation = -18861.556151 eV Core-core repulsion = 16033.948976 eV Total energy + Delta-G solvation = -2827.607175 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.88721 -38.65611 -35.06108 -32.87458 -32.78655 -30.37272 -30.34337 -27.49319 -27.25481 -25.77940 -25.14941 -22.13503 -21.37464 -20.35077 -18.71937 -17.44620 -16.54309 -16.03231 -15.52926 -15.27584 -14.63471 -14.42589 -14.27933 -14.08348 -13.60589 -13.56943 -12.79188 -12.38084 -12.14603 -12.06122 -11.88985 -11.76387 -11.54622 -11.40728 -11.19654 -10.90738 -10.81857 -10.64266 -10.38833 -10.12732 -9.98147 -9.48790 -9.37973 -8.96260 -8.69183 -8.64914 -6.20535 -4.22785 2.08915 2.85509 2.93900 3.26005 3.33208 3.38733 4.22312 4.33975 4.51871 4.63841 4.73580 4.98840 5.12749 5.17315 5.25960 5.31521 5.42319 5.46746 5.60352 5.63755 5.74303 5.77579 5.80965 5.92162 5.96658 6.06839 6.09743 6.15811 6.26480 6.34632 6.70988 6.87016 6.95853 7.07808 7.12642 7.26424 7.55259 8.28101 8.78686 8.96757 9.39773 10.91610 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.043754 B = 0.004444 C = 0.004327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.792180 B = 6298.619836 C = 6470.111622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.095 4.095 3 C -0.140 4.140 4 C -0.143 4.143 5 C 0.194 3.806 6 H 0.092 0.908 7 N -0.841 5.841 8 C -0.027 4.027 9 C -0.037 4.037 10 N -0.276 5.276 11 C 0.122 3.878 12 C -0.020 4.020 13 C -0.531 4.531 14 H 0.077 0.923 15 C 0.076 3.924 16 N -0.895 5.895 17 Si 0.879 3.121 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.266 1.266 21 N -0.083 5.083 22 N -0.278 5.278 23 H 0.051 0.949 24 H 0.091 0.909 25 H 0.044 0.956 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.341 0.659 33 H 0.346 0.654 34 H 0.186 0.814 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.023 0.977 38 H 0.032 0.968 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.696 -3.753 21.331 22.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.098 4.098 3 C -0.197 4.197 4 C -0.201 4.201 5 C 0.080 3.920 6 H 0.110 0.890 7 N -0.372 5.372 8 C -0.166 4.166 9 C -0.190 4.190 10 N -0.069 5.069 11 C 0.003 3.997 12 C -0.058 4.058 13 C -0.569 4.569 14 H 0.095 0.905 15 C -0.127 4.127 16 N -0.532 5.532 17 Si 0.706 3.294 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.191 1.191 21 N -0.062 5.062 22 N -0.144 5.144 23 H 0.070 0.930 24 H 0.109 0.891 25 H 0.063 0.937 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.155 0.845 33 H 0.160 0.840 34 H 0.203 0.797 35 H 0.112 0.888 36 H 0.118 0.882 37 H 0.042 0.958 38 H 0.050 0.950 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.120 -3.835 20.118 20.717 hybrid contribution 0.528 -0.337 0.748 0.975 sum 3.648 -4.172 20.866 21.590 Atomic orbital electron populations 1.22037 0.93283 1.02223 1.03165 1.21224 0.97700 0.95767 0.95092 1.21847 1.00074 0.95731 1.02096 1.21915 1.00373 1.00503 0.97277 1.19456 0.86976 0.97823 0.87752 0.88977 1.58829 1.06488 1.20447 1.51395 1.21529 0.90373 1.06140 0.98581 1.23308 0.99017 1.04399 0.92226 1.47886 1.04928 1.36468 1.17613 1.22480 1.01874 0.97559 0.77825 1.19858 0.96488 0.96713 0.92752 1.20800 1.27418 1.19581 0.89101 0.90474 1.24911 0.96157 0.96353 0.95277 1.69886 1.43394 1.41541 0.98391 0.86786 0.82119 0.82866 0.77655 1.19851 1.21090 1.19070 1.78299 1.04594 1.17250 1.06078 1.74894 1.18906 1.13754 1.06896 0.93009 0.89051 0.93715 0.92700 0.93175 0.92400 0.92396 0.93008 0.92425 0.84462 0.84002 0.79693 0.88762 0.88200 0.95825 0.94979 0.92343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 8.09 37.16 0.30 -1.43 16 2 C -0.10 -0.94 0.62 -154.51 -0.10 -1.04 16 3 C -0.14 -1.38 7.89 37.16 0.29 -1.09 16 4 C -0.14 -1.09 8.14 37.16 0.30 -0.79 16 5 C 0.19 2.17 2.71 -68.86 -0.19 1.98 16 6 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 7 N -0.84 -7.50 8.44 -5.65 -0.05 -7.54 16 8 C -0.03 -0.40 5.05 -82.78 -0.42 -0.82 16 9 C -0.04 -0.57 10.74 -17.05 -0.18 -0.75 16 10 N -0.28 -4.94 3.44 -61.26 -0.21 -5.15 16 11 C 0.12 2.24 6.39 -4.04 -0.03 2.21 16 12 C -0.02 -0.46 4.17 -27.88 -0.12 -0.58 16 13 C -0.53 -14.32 9.66 -34.44 -0.33 -14.66 16 14 H 0.08 2.17 7.99 -52.49 -0.42 1.75 16 15 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 16 N -0.89 -26.66 13.96 55.43 0.77 -25.89 16 17 Si 0.88 21.66 27.47 -169.99 -4.67 16.99 16 18 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.27 -6.49 6.54 56.52 0.37 -6.12 16 21 N -0.08 -1.64 12.91 60.35 0.78 -0.86 16 22 N -0.28 -4.97 9.61 33.29 0.32 -4.65 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.09 1.31 5.33 -51.93 -0.28 1.03 16 25 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.41 6.67 -51.93 -0.35 0.07 16 28 H 0.06 0.71 7.22 -51.93 -0.37 0.34 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.33 6.77 -51.93 -0.35 -0.03 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.34 2.79 6.98 -39.29 -0.27 2.52 16 33 H 0.35 2.40 7.40 -39.29 -0.29 2.11 16 34 H 0.19 2.26 7.88 -52.48 -0.41 1.85 16 35 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 36 H 0.10 1.61 8.07 -51.92 -0.42 1.19 16 37 H 0.02 0.56 7.20 -51.93 -0.37 0.19 16 38 H 0.03 0.78 7.55 -51.93 -0.39 0.38 16 39 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 309.83 15.07 4.67 4.67 Total: -1.00 -30.51 309.83 -5.00 -35.51 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -6.06 Total: 1.83 kcal Atomic # 6 Polarization: -14.33 SS G_CDS: -0.56 Total: -14.89 kcal Atomic # 7 Polarization: -45.71 SS G_CDS: 1.61 Total: -44.10 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.51 -5.00 -35.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594649620.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.315 kcal (2) G-P(sol) polarization free energy of solvation -30.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds