Wall clock time and date at job start Sun Mar 29 2020 23:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99511 * 2 1 3 5 5 C 1.52992 * 109.47482 * 239.99653 * 2 1 3 6 6 H 1.09002 * 109.47103 * 300.00247 * 5 2 1 7 7 N 1.46901 * 109.47859 * 179.97438 * 5 2 1 8 8 C 1.50708 * 109.47025 * 59.99816 * 5 2 1 9 9 C 1.35348 * 126.74845 * 125.00147 * 8 5 2 10 10 N 1.35312 * 106.17600 * 180.02562 * 9 8 5 11 11 C 1.46499 * 125.87312 * 179.97438 * 10 9 8 12 12 C 1.52996 * 109.47042 * 124.99851 * 11 10 9 13 13 C 1.50709 * 109.47192 * 180.02562 * 12 11 10 14 14 H 1.07992 * 119.99470 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99770 * 180.02562 * 13 12 11 16 16 N 1.31512 * 119.99441 * 179.97438 * 15 13 12 17 17 Si 1.86797 * 120.00245 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.47188 * 90.00373 * 17 15 13 19 19 H 1.48507 * 109.47089 * 210.00369 * 17 15 13 20 20 H 1.48501 * 109.47378 * 329.99964 * 17 15 13 21 21 N 1.28714 * 108.26361 * 359.97438 * 10 9 8 22 22 N 1.28645 * 110.17475 * 359.72020 * 21 10 9 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 26 26 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 27 27 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 29 29 H 1.09002 * 109.46716 * 60.00091 * 4 2 1 30 30 H 1.09000 * 109.47486 * 180.02562 * 4 2 1 31 31 H 1.09001 * 109.47362 * 300.00732 * 4 2 1 32 32 H 1.00907 * 110.99587 * 300.00993 * 7 5 2 33 33 H 1.00900 * 110.99903 * 63.94751 * 7 5 2 34 34 H 1.08008 * 126.91446 * 359.96668 * 9 8 5 35 35 H 1.08998 * 109.47685 * 245.00184 * 11 10 9 36 36 H 1.09007 * 109.46897 * 5.00339 * 11 10 9 37 37 H 1.09001 * 109.47602 * 300.00049 * 12 11 10 38 38 H 1.09000 * 109.47360 * 60.00017 * 12 11 10 39 39 H 0.97007 * 119.99984 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 2.0400 -0.7213 -1.2491 6 1 1.6767 -1.7489 -1.2491 7 7 3.5091 -0.7208 -1.2495 8 6 1.5377 -0.0109 -2.4797 9 6 2.2863 0.4690 -3.5000 10 7 1.4175 1.0235 -4.3767 11 6 1.7712 1.6730 -5.6414 12 6 0.9972 1.0159 -6.7859 13 6 1.3614 1.6836 -8.0871 14 1 2.0734 2.4955 -8.0964 15 6 0.7849 1.2584 -9.2651 16 7 1.1024 1.8414 -10.4004 17 14 -0.4471 -0.1456 -9.2486 18 1 -1.8162 0.3993 -9.0651 19 1 -0.3759 -0.8819 -10.5364 20 1 -0.1285 -1.0707 -8.1314 21 7 0.2269 0.8824 -3.9086 22 7 0.2638 0.2638 -2.7813 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.6767 1.9563 0.8899 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 -1.7488 1.2493 30 1 3.1300 -0.7207 1.2495 31 1 1.6766 -0.2073 2.1393 32 1 3.8703 0.2214 -1.2496 33 1 3.8710 -1.2465 -0.4681 34 1 3.3611 0.4201 -3.5949 35 1 1.5155 2.7313 -5.5904 36 1 2.8415 1.5658 -5.8180 37 1 1.2529 -0.0424 -6.8371 38 1 -0.0731 1.1230 -6.6094 39 1 0.6971 1.5420 -11.2293 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594649620.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:40:54 Heat of formation + Delta-G solvation = 60.612491 kcal Electronic energy + Delta-G solvation = -18862.475269 eV Core-core repulsion = 16033.948976 eV Total energy + Delta-G solvation = -2828.526293 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -44.17870 -39.50774 -36.64396 -34.73178 -33.71229 -32.12951 -31.46511 -28.28172 -28.12631 -27.39429 -26.13438 -23.86020 -22.57587 -21.78556 -19.69565 -19.20217 -17.88582 -17.41684 -16.57105 -16.35840 -16.17299 -15.52365 -15.34471 -15.26652 -14.99978 -14.79530 -14.42852 -13.73305 -13.23512 -13.08364 -13.04144 -12.95970 -12.61962 -12.55941 -12.46955 -12.23415 -12.13047 -11.93484 -11.84834 -11.59143 -11.57195 -11.29192 -10.85523 -10.78550 -10.06350 -9.51963 -8.38133 -6.43355 0.79351 1.29936 1.32837 1.42404 1.59802 1.62525 2.27796 2.97634 3.27481 3.62246 3.83086 3.90273 3.97707 4.02568 4.16812 4.29196 4.37762 4.50970 4.59895 4.65631 4.80476 4.81636 4.92056 4.92886 5.05290 5.06845 5.09172 5.13446 5.23228 5.29232 5.36708 5.43756 5.44951 5.71675 5.81742 6.12544 6.22088 6.63466 6.67282 7.22321 7.65591 8.77123 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.043754 B = 0.004444 C = 0.004327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.792180 B = 6298.619836 C = 6470.111622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.090 4.090 3 C -0.137 4.137 4 C -0.138 4.138 5 C 0.198 3.802 6 H 0.088 0.912 7 N -0.838 5.838 8 C -0.025 4.025 9 C -0.030 4.030 10 N -0.283 5.283 11 C 0.132 3.868 12 C -0.013 4.013 13 C -0.530 4.530 14 H 0.057 0.943 15 C 0.022 3.978 16 N -0.937 5.937 17 Si 0.937 3.063 18 H -0.270 1.270 19 H -0.277 1.277 20 H -0.262 1.262 21 N -0.132 5.132 22 N -0.290 5.290 23 H 0.050 0.950 24 H 0.061 0.939 25 H 0.052 0.948 26 H 0.060 0.940 27 H 0.070 0.930 28 H 0.028 0.972 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.348 0.652 33 H 0.360 0.640 34 H 0.217 0.783 35 H 0.098 0.902 36 H 0.126 0.874 37 H 0.017 0.983 38 H 0.019 0.981 39 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.970 -4.931 23.474 24.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.092 4.092 3 C -0.194 4.194 4 C -0.195 4.195 5 C 0.084 3.916 6 H 0.106 0.894 7 N -0.371 5.371 8 C -0.165 4.165 9 C -0.182 4.182 10 N -0.076 5.076 11 C 0.012 3.988 12 C -0.051 4.051 13 C -0.569 4.569 14 H 0.075 0.925 15 C -0.177 4.177 16 N -0.577 5.577 17 Si 0.762 3.238 18 H -0.196 1.196 19 H -0.203 1.203 20 H -0.187 1.187 21 N -0.110 5.110 22 N -0.156 5.156 23 H 0.069 0.931 24 H 0.080 0.920 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.089 0.911 28 H 0.047 0.953 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.163 0.837 33 H 0.177 0.823 34 H 0.234 0.766 35 H 0.116 0.884 36 H 0.144 0.856 37 H 0.036 0.964 38 H 0.037 0.963 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.390 -5.017 22.286 23.261 hybrid contribution 0.186 0.059 0.166 0.257 sum 4.576 -4.958 22.452 23.444 Atomic orbital electron populations 1.22011 0.94920 1.01777 1.02058 1.21177 0.96310 0.96033 0.95713 1.21818 1.01331 0.95332 1.00926 1.21870 1.01545 1.00287 0.95847 1.19448 0.88421 0.97113 0.86603 0.89383 1.58757 1.04766 1.21187 1.52391 1.22164 0.89314 1.05374 0.99648 1.23877 1.00120 1.02884 0.91324 1.47780 1.05160 1.37022 1.17687 1.22237 1.02478 0.97257 0.76789 1.19654 0.96331 0.96259 0.92866 1.21109 1.26233 1.18769 0.90776 0.92491 1.25702 0.98075 0.98782 0.95134 1.69995 1.45108 1.43411 0.99141 0.85858 0.79893 0.80160 0.77908 1.19567 1.20260 1.18674 1.78298 1.05799 1.19516 1.07385 1.74899 1.20646 1.13624 1.06387 0.93120 0.92007 0.92887 0.92138 0.91109 0.95300 0.92086 0.91103 0.91957 0.83720 0.82308 0.76616 0.88365 0.85577 0.96434 0.96303 0.92116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 8.09 71.98 0.58 -2.75 16 2 C -0.09 -1.58 0.62 -52.18 -0.03 -1.61 16 3 C -0.14 -2.40 7.89 71.98 0.57 -1.83 16 4 C -0.14 -1.64 8.14 71.98 0.59 -1.06 16 5 C 0.20 3.98 2.71 44.17 0.12 4.10 16 6 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 7 N -0.84 -12.00 8.44 -171.80 -1.45 -13.45 16 8 C -0.03 -0.71 5.05 41.60 0.21 -0.50 16 9 C -0.03 -0.85 10.74 83.49 0.90 0.05 16 10 N -0.28 -9.88 3.44 -347.73 -1.20 -11.08 16 11 C 0.13 4.72 6.39 86.38 0.55 5.27 16 12 C -0.01 -0.59 4.17 29.85 0.12 -0.46 16 13 C -0.53 -28.82 9.66 25.60 0.25 -28.57 16 14 H 0.06 3.25 7.99 -2.91 -0.02 3.23 16 15 C 0.02 1.26 5.47 84.65 0.46 1.72 16 16 N -0.94 -56.59 13.96 21.45 0.30 -56.29 16 17 Si 0.94 44.80 27.47 68.60 1.88 46.69 16 18 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 19 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 20 H -0.26 -12.27 6.54 99.48 0.65 -11.62 16 21 N -0.13 -5.22 12.91 37.02 0.48 -4.75 16 22 N -0.29 -10.33 9.61 -48.60 -0.47 -10.80 16 23 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.06 1.78 5.33 -2.39 -0.01 1.77 16 25 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 26 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.07 0.93 6.67 -2.39 -0.02 0.92 16 28 H 0.03 0.67 7.22 -2.39 -0.02 0.65 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.07 0.59 6.77 -2.39 -0.02 0.57 16 31 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.35 4.36 6.98 -89.69 -0.63 3.74 16 33 H 0.36 3.53 7.40 -89.69 -0.66 2.87 16 34 H 0.22 4.51 7.88 -2.91 -0.02 4.49 16 35 H 0.10 3.41 8.14 -2.39 -0.02 3.39 16 36 H 0.13 3.81 8.07 -2.38 -0.02 3.79 16 37 H 0.02 0.82 7.20 -2.39 -0.02 0.80 16 38 H 0.02 0.91 7.55 -2.39 -0.02 0.89 16 39 H 0.27 15.25 8.31 -92.70 -0.77 14.48 16 Total: -1.00 -66.67 309.83 3.57 -63.10 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -0.29 Total: 12.21 kcal Atomic # 6 Polarization: -29.96 SS G_CDS: 4.32 Total: -25.64 kcal Atomic # 7 Polarization: -94.02 SS G_CDS: -2.34 Total: -96.36 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 1.88 Total: 46.69 kcal Total: -66.67 3.57 -63.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594649620.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.714 kcal (2) G-P(sol) polarization free energy of solvation -66.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds