Wall clock time and date at job start Sun Mar 29 2020 23:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36933 * 120.00083 * 2 1 4 4 H 1.08000 * 119.99873 * 154.63280 * 3 2 1 5 5 C 1.38812 * 120.00264 * 334.62859 * 3 2 1 6 6 N 1.31625 * 119.99588 * 3.98101 * 5 3 2 7 7 Si 1.86798 * 120.00263 * 183.98090 * 5 3 2 8 8 H 1.48497 * 109.47084 * 60.00120 * 7 5 3 9 9 H 1.48506 * 109.47116 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47124 * 300.00118 * 7 5 3 11 11 C 1.46506 * 119.99789 * 179.72852 * 2 1 3 12 12 H 1.08998 * 109.35353 * 180.02562 * 11 2 1 13 13 C 1.53057 * 109.35991 * 60.27604 * 11 2 1 14 14 C 1.53639 * 108.25792 * 191.17278 * 13 11 2 15 15 H 1.08995 * 109.94139 * 187.74648 * 14 13 11 16 16 C 1.53099 * 108.50686 * 308.00123 * 14 13 11 17 17 C 1.53001 * 109.73375 * 176.00809 * 16 14 13 18 18 C 1.53073 * 109.70390 * 300.21481 * 17 16 14 19 19 C 1.52969 * 109.14899 * 60.68527 * 18 17 16 20 20 C 1.52466 * 109.96749 * 300.39140 * 19 18 17 21 21 H 1.09004 * 107.67122 * 176.19473 * 20 19 18 22 22 N 1.45450 * 111.05863 * 294.49333 * 20 19 18 23 23 C 1.33337 * 123.63617 * 143.93969 * 22 20 19 24 24 O 1.21279 * 118.13145 * 177.33141 * 23 22 20 25 25 H 1.09007 * 109.47195 * 84.47486 * 1 2 3 26 26 H 1.08998 * 109.47244 * 204.46953 * 1 2 3 27 27 H 1.08997 * 109.46976 * 324.47958 * 1 2 3 28 28 H 0.97000 * 119.99427 * 179.97438 * 6 5 3 29 29 H 1.09001 * 109.70674 * 310.85801 * 13 11 2 30 30 H 1.08996 * 109.70954 * 71.43567 * 13 11 2 31 31 H 1.08998 * 109.42094 * 296.68837 * 16 14 13 32 32 H 1.08999 * 109.41847 * 56.50135 * 16 14 13 33 33 H 1.09009 * 109.49521 * 180.02562 * 17 16 14 34 34 H 1.08995 * 109.05446 * 60.15235 * 17 16 14 35 35 H 1.08996 * 109.52830 * 300.77393 * 18 17 16 36 36 H 1.09007 * 109.57450 * 180.61326 * 18 17 16 37 37 H 1.09000 * 109.38654 * 180.24363 * 19 18 17 38 38 H 1.08997 * 109.39420 * 60.54263 * 19 18 17 39 39 H 0.96995 * 118.15256 * 323.81340 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1516 1.2309 0.4007 5 6 1.5561 2.3301 -0.5151 6 7 0.3080 2.2935 -0.9314 7 14 2.5286 3.9217 -0.6174 8 1 3.7218 3.7183 -1.4776 9 1 1.6739 4.9875 -1.1996 10 1 2.9629 4.3248 0.7442 11 6 2.1975 -1.2688 0.0060 12 1 3.2687 -1.0675 0.0055 13 6 1.8311 -2.0721 -1.2442 14 6 2.3822 -3.4968 -1.0796 15 1 2.2578 -4.0531 -2.0086 16 6 3.8678 -3.4048 -0.7213 17 6 4.4223 -4.8054 -0.4532 18 6 3.6585 -5.4495 0.7066 19 6 2.1799 -5.5638 0.3317 20 6 1.6072 -4.1803 0.0444 21 1 0.5759 -4.3107 -0.2836 22 7 1.6020 -3.3574 1.2437 23 6 1.8380 -2.0451 1.2401 24 8 1.7602 -1.4472 2.2923 25 1 -0.3634 0.0990 -1.0229 26 1 -0.3633 -0.9353 0.4257 27 1 -0.3633 0.8364 0.5971 28 1 -0.1069 3.0932 -1.2910 29 1 0.7472 -2.1078 -1.3536 30 1 2.2741 -1.6054 -2.1240 31 1 4.4113 -2.9417 -1.5448 32 1 3.9871 -2.7987 0.1768 33 1 5.4798 -4.7353 -0.1981 34 1 4.3026 -5.4131 -1.3500 35 1 3.7616 -4.8316 1.5985 36 1 4.0624 -6.4428 0.9029 37 1 1.6315 -6.0182 1.1568 38 1 2.0788 -6.1886 -0.5557 39 1 1.4148 -3.7873 2.0928 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595305642.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:34:23 Heat of formation + Delta-G solvation = -46.350557 kcal Electronic energy + Delta-G solvation = -20096.745914 eV Core-core repulsion = 17231.288604 eV Total energy + Delta-G solvation = -2865.457310 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.94766 -39.01360 -37.43157 -34.93505 -34.44204 -32.58077 -30.62851 -29.17253 -28.12098 -25.76646 -24.00034 -23.32251 -22.76247 -21.33553 -19.06917 -18.87244 -17.77763 -17.17495 -16.99044 -16.42804 -15.99810 -15.36830 -15.10792 -14.83505 -14.63169 -14.57682 -14.34982 -13.77933 -13.34663 -13.17541 -13.07303 -12.75876 -12.68167 -12.47370 -12.38875 -12.23077 -12.16037 -11.94461 -11.68640 -11.30998 -11.13279 -11.09299 -10.70335 -10.50364 -9.86424 -8.82994 -7.87508 -5.36902 1.44262 1.48122 1.54301 1.74389 2.39822 2.53314 3.27284 3.51396 3.68434 3.80218 3.84956 3.94133 4.20484 4.25327 4.40753 4.43012 4.55503 4.59515 4.62417 4.70060 4.72199 4.95799 5.05623 5.09395 5.20611 5.22290 5.31411 5.31842 5.36394 5.38602 5.47370 5.56404 5.60714 5.65954 6.04165 6.27041 6.46198 7.09553 7.40436 7.78378 8.22353 9.16679 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.035011 B = 0.006484 C = 0.006200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.556897 B = 4317.309557 C = 4514.941084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.194 3.806 2 N -0.597 5.597 3 C -0.271 4.271 4 H 0.063 0.937 5 C -0.046 4.046 6 N -0.937 5.937 7 Si 0.976 3.024 8 H -0.269 1.269 9 H -0.288 1.288 10 H -0.283 1.283 11 C 0.166 3.834 12 H 0.085 0.915 13 C -0.121 4.121 14 C -0.085 4.085 15 H 0.120 0.880 16 C -0.121 4.121 17 C -0.112 4.112 18 C -0.120 4.120 19 C -0.118 4.118 20 C 0.140 3.860 21 H 0.073 0.927 22 N -0.702 5.702 23 C 0.501 3.499 24 O -0.603 6.603 25 H 0.016 0.984 26 H 0.001 0.999 27 H 0.016 0.984 28 H 0.251 0.749 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.034 0.966 33 H 0.061 0.939 34 H 0.083 0.917 35 H 0.040 0.960 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.105 0.895 39 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.489 -19.507 -2.762 20.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.319 5.319 3 C -0.400 4.400 4 H 0.081 0.919 5 C -0.241 4.241 6 N -0.584 5.584 7 Si 0.803 3.197 8 H -0.195 1.195 9 H -0.214 1.214 10 H -0.210 1.210 11 C 0.055 3.945 12 H 0.103 0.897 13 C -0.160 4.160 14 C -0.104 4.104 15 H 0.138 0.862 16 C -0.158 4.158 17 C -0.149 4.149 18 C -0.157 4.157 19 C -0.155 4.155 20 C 0.036 3.964 21 H 0.091 0.909 22 N -0.354 5.354 23 C 0.286 3.714 24 O -0.484 6.484 25 H 0.034 0.966 26 H 0.019 0.981 27 H 0.035 0.965 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.053 0.947 33 H 0.080 0.920 34 H 0.102 0.898 35 H 0.059 0.941 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.123 0.877 39 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 5.374 -18.938 -2.517 19.846 hybrid contribution -0.001 1.333 0.633 1.475 sum 5.373 -17.605 -1.884 18.503 Atomic orbital electron populations 1.20445 0.82763 0.94390 0.97502 1.43863 1.01855 1.00633 1.85516 1.19472 0.99104 0.87863 1.33586 0.91897 1.25889 0.97522 1.01900 0.98776 1.70251 1.12499 1.28682 1.46929 0.85227 0.78038 0.78630 0.77821 1.19468 1.21355 1.20956 1.20441 0.96994 0.85848 0.91230 0.89690 1.22191 1.00958 0.95406 0.97465 1.21532 0.95023 0.94497 0.99312 0.86169 1.21678 0.94971 0.98333 1.00851 1.21512 0.99128 0.94953 0.99343 1.21521 0.95358 1.01039 0.97787 1.21750 0.95926 0.93940 1.03931 1.20926 1.00079 0.91117 0.84277 0.90898 1.45597 1.70860 1.07146 1.11765 1.21724 0.75127 0.82672 0.91840 1.90645 1.54037 1.69075 1.34613 0.96560 0.98072 0.96535 0.93999 0.92532 0.91382 0.91141 0.94722 0.91985 0.89800 0.94102 0.90023 0.90423 0.87703 0.77013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 10.65 7.78 127.77 0.99 11.65 16 2 N -0.60 -32.60 2.57 -707.82 -1.82 -34.42 16 3 C -0.27 -16.03 9.58 84.03 0.81 -15.22 16 4 H 0.06 3.69 7.81 -2.91 -0.02 3.66 16 5 C -0.05 -2.70 5.38 84.86 0.46 -2.24 16 6 N -0.94 -57.16 10.13 21.65 0.22 -56.94 16 7 Si 0.98 46.85 29.56 68.60 2.03 48.88 16 8 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 9 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 10 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 11 C 0.17 7.21 2.14 44.09 0.09 7.31 16 12 H 0.09 3.78 6.53 -2.39 -0.02 3.76 16 13 C -0.12 -4.08 5.09 30.83 0.16 -3.92 16 14 C -0.08 -1.92 2.68 -10.65 -0.03 -1.95 16 15 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 16 C -0.12 -2.75 4.62 30.63 0.14 -2.60 16 17 C -0.11 -1.81 5.90 30.62 0.18 -1.63 16 18 C -0.12 -1.85 5.86 30.61 0.18 -1.67 16 19 C -0.12 -1.61 5.54 30.41 0.17 -1.45 16 20 C 0.14 2.97 2.89 44.91 0.13 3.10 16 21 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 22 N -0.70 -20.88 4.69 -448.51 -2.10 -22.99 16 23 C 0.50 20.99 5.55 87.71 0.49 21.48 16 24 O -0.60 -31.67 17.50 -3.03 -0.05 -31.73 16 25 H 0.02 0.92 7.44 -2.38 -0.02 0.90 16 26 H 0.00 0.05 7.29 -2.39 -0.02 0.03 16 27 H 0.02 0.99 7.04 -2.39 -0.02 0.97 16 28 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 29 H 0.06 2.02 7.33 -2.39 -0.02 2.01 16 30 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 31 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.03 1.01 5.50 -2.39 -0.01 0.99 16 33 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 34 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.04 0.83 7.88 -2.39 -0.02 0.81 16 36 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 37 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.39 10.70 8.68 -92.71 -0.80 9.90 16 Total: -1.00 -74.78 295.84 2.27 -72.51 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: 0.23 Total: 11.82 kcal Atomic # 6 Polarization: 9.09 SS G_CDS: 3.77 Total: 12.85 kcal Atomic # 7 Polarization: -110.64 SS G_CDS: -3.70 Total: -114.34 kcal Atomic # 8 Polarization: -31.67 SS G_CDS: -0.05 Total: -31.73 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.88 kcal Total: -74.78 2.27 -72.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595305642.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.163 kcal (2) G-P(sol) polarization free energy of solvation -74.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds