Wall clock time and date at job start Sun Mar 29 2020 23:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36936 * 120.00090 * 2 1 4 4 H 1.08001 * 120.00176 * 200.41453 * 3 2 1 5 5 C 1.38812 * 119.99974 * 20.42342 * 3 2 1 6 6 N 1.31616 * 119.99603 * 14.99607 * 5 3 2 7 7 Si 1.86796 * 120.00035 * 194.99313 * 5 3 2 8 8 H 1.48508 * 109.46858 * 84.99988 * 7 5 3 9 9 H 1.48495 * 109.47053 * 204.99790 * 7 5 3 10 10 H 1.48496 * 109.47446 * 325.00345 * 7 5 3 11 11 C 1.46508 * 119.99820 * 180.02562 * 2 1 3 12 12 H 1.09001 * 109.13256 * 179.48886 * 11 2 1 13 13 C 1.53181 * 109.30261 * 59.99950 * 11 2 1 14 14 C 1.52937 * 108.21316 * 192.82097 * 13 11 2 15 15 H 1.08997 * 109.43625 * 307.95675 * 14 13 11 16 16 C 1.52772 * 110.89841 * 187.27476 * 14 13 11 17 17 C 1.53194 * 108.87309 * 179.44103 * 16 14 13 18 18 C 1.52890 * 109.96419 * 59.43045 * 17 16 14 19 19 C 1.53204 * 109.95545 * 301.06934 * 18 17 16 20 20 C 1.52709 * 108.89503 * 59.32458 * 19 18 17 21 21 H 1.09000 * 108.75659 * 57.61530 * 20 19 18 22 22 N 1.45378 * 111.01600 * 177.23942 * 20 19 18 23 23 C 1.34303 * 122.68196 * 145.41896 * 22 20 19 24 24 O 1.21281 * 117.91865 * 175.28342 * 23 22 20 25 25 H 1.09000 * 109.47169 * 275.14257 * 1 2 3 26 26 H 1.09001 * 109.47473 * 35.14274 * 1 2 3 27 27 H 1.09003 * 109.47187 * 155.14513 * 1 2 3 28 28 H 0.97005 * 119.99476 * 180.02562 * 6 5 3 29 29 H 1.08998 * 109.71265 * 73.14179 * 13 11 2 30 30 H 1.08993 * 109.71208 * 312.50009 * 13 11 2 31 31 H 1.08994 * 109.56790 * 299.25705 * 16 14 13 32 32 H 1.08998 * 109.57073 * 59.62332 * 16 14 13 33 33 H 1.08998 * 109.39014 * 179.58214 * 17 16 14 34 34 H 1.09003 * 109.39004 * 299.37706 * 17 16 14 35 35 H 1.08997 * 109.39257 * 61.21901 * 18 17 16 36 36 H 1.09001 * 109.39246 * 181.02121 * 18 17 16 37 37 H 1.08997 * 109.56591 * 299.49788 * 19 18 17 38 38 H 1.08994 * 109.56933 * 179.14833 * 19 18 17 39 39 H 0.96998 * 118.40371 * 323.67948 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1788 1.2153 -0.3262 5 6 1.5210 2.3503 0.4195 6 7 0.3886 2.2829 1.0869 7 14 2.2824 4.0126 0.0369 8 1 1.8668 4.4465 -1.3212 9 1 1.8231 5.0093 1.0372 10 1 3.7623 3.9034 0.0903 11 6 2.1974 -1.2688 -0.0006 12 1 3.2679 -1.0634 -0.0097 13 6 1.8246 -2.0682 -1.2529 14 6 2.3376 -3.4982 -1.0776 15 1 3.3944 -3.4744 -0.8115 16 6 2.1582 -4.3031 -2.3636 17 6 2.6983 -5.7193 -2.1413 18 6 1.9436 -6.3918 -0.9942 19 6 2.0999 -5.5683 0.2882 20 6 1.5449 -4.1664 0.0465 21 1 0.5028 -4.2503 -0.2619 22 7 1.6112 -3.3635 1.2566 23 6 1.8511 -2.0422 1.2381 24 8 1.8015 -1.4413 2.2904 25 1 -0.3633 0.0921 1.0235 26 1 -0.3634 0.8403 -0.5915 27 1 -0.3634 -0.9325 -0.4320 28 1 -0.0508 3.0966 1.3797 29 1 2.2886 -1.6160 -2.1294 30 1 0.7414 -2.0784 -1.3736 31 1 1.0997 -4.3520 -2.6190 32 1 2.7094 -3.8251 -3.1734 33 1 2.5676 -6.3036 -3.0521 34 1 3.7586 -5.6675 -1.8937 35 1 0.8867 -6.4654 -1.2504 36 1 2.3472 -7.3913 -0.8322 37 1 3.1550 -5.5026 0.5535 38 1 1.5473 -6.0450 1.0978 39 1 1.4509 -3.7988 2.1085 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595305643.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:34:28 Heat of formation + Delta-G solvation = -28.240343 kcal Electronic energy + Delta-G solvation = -19775.219301 eV Core-core repulsion = 16910.547309 eV Total energy + Delta-G solvation = -2864.671992 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.23910 -37.79555 -35.49762 -34.03127 -32.77013 -30.88144 -29.15324 -27.96661 -25.96985 -24.00142 -22.50354 -22.08624 -21.31699 -19.94888 -18.32726 -16.83952 -16.44456 -15.86328 -15.10270 -14.62999 -14.42387 -14.16084 -13.96731 -13.64090 -13.15951 -13.03054 -12.62537 -12.45637 -12.09974 -11.81069 -11.44608 -11.36685 -11.19808 -10.89703 -10.78555 -10.63864 -10.49100 -10.32948 -10.29044 -10.10958 -9.83612 -9.77787 -8.89996 -8.49143 -8.43614 -6.75599 -5.65620 -3.11096 3.42034 3.46617 3.50440 3.53746 3.80200 4.51438 4.60050 4.64379 4.80803 5.04515 5.11835 5.30171 5.34887 5.38508 5.41398 5.44441 5.56544 5.62986 5.76053 5.85432 5.92789 5.96276 6.03392 6.08402 6.13956 6.18314 6.22857 6.42110 6.56557 6.68258 6.84312 7.39006 7.45840 7.77617 7.86862 7.99609 8.41117 9.06803 9.27255 9.88108 10.35624 11.38860 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.038583 B = 0.005933 C = 0.005521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.525291 B = 4718.596721 C = 5070.186525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.570 5.570 3 C -0.258 4.258 4 H 0.072 0.928 5 C 0.005 3.995 6 N -0.899 5.899 7 Si 0.908 3.092 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.168 3.832 12 H 0.091 0.909 13 C -0.129 4.129 14 C -0.096 4.096 15 H 0.075 0.925 16 C -0.109 4.109 17 C -0.121 4.121 18 C -0.115 4.115 19 C -0.128 4.128 20 C 0.150 3.850 21 H 0.060 0.940 22 N -0.735 5.735 23 C 0.490 3.510 24 O -0.530 6.530 25 H 0.032 0.968 26 H 0.047 0.953 27 H -0.002 1.002 28 H 0.252 0.748 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.695 -17.386 -7.200 19.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.290 5.290 3 C -0.388 4.388 4 H 0.090 0.910 5 C -0.194 4.194 6 N -0.542 5.542 7 Si 0.738 3.262 8 H -0.214 1.214 9 H -0.218 1.218 10 H -0.205 1.205 11 C 0.055 3.945 12 H 0.109 0.891 13 C -0.168 4.168 14 C -0.116 4.116 15 H 0.093 0.907 16 C -0.147 4.147 17 C -0.159 4.159 18 C -0.153 4.153 19 C -0.166 4.166 20 C 0.044 3.956 21 H 0.077 0.923 22 N -0.390 5.390 23 C 0.276 3.724 24 O -0.404 6.404 25 H 0.051 0.949 26 H 0.066 0.934 27 H 0.017 0.983 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 2.594 -16.709 -6.752 18.207 hybrid contribution 0.161 0.614 0.376 0.737 sum 2.756 -16.095 -6.376 17.530 Atomic orbital electron populations 1.20835 0.82261 0.95426 0.99830 1.43910 1.01903 0.99276 1.83944 1.19229 0.97377 0.84335 1.37811 0.91017 1.25046 0.97931 0.98515 0.97902 1.70131 1.18728 1.26787 1.38603 0.86222 0.78688 0.83817 0.77470 1.21406 1.21753 1.20497 1.20375 0.98088 0.87002 0.89030 0.89114 1.22206 1.01954 0.92878 0.99797 1.21385 1.00273 0.95476 0.94432 0.90668 1.21514 1.01577 0.94651 0.96941 1.21578 1.00032 0.96164 0.98088 1.21483 1.00844 0.98399 0.94555 1.21851 1.01882 0.94881 0.97983 1.20671 0.99025 0.90173 0.85755 0.92253 1.46138 1.75114 1.08956 1.08813 1.22580 0.75604 0.80727 0.93532 1.90710 1.49834 1.66631 1.33194 0.94919 0.93405 0.98335 0.93732 0.90888 0.91342 0.91686 0.91309 0.92032 0.91957 0.91840 0.91915 0.91314 0.91697 0.78166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.18 8.30 59.84 0.50 4.68 16 2 N -0.57 -14.93 2.56 -175.05 -0.45 -15.38 16 3 C -0.26 -7.36 9.61 -15.06 -0.14 -7.50 16 4 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 5 C 0.01 0.15 5.06 -17.43 -0.09 0.06 16 6 N -0.90 -27.59 10.67 55.49 0.59 -27.00 16 7 Si 0.91 22.49 29.58 -169.99 -5.03 17.46 16 8 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 9 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 C 0.17 3.60 2.77 -69.28 -0.19 3.40 16 12 H 0.09 1.95 7.83 -51.93 -0.41 1.54 16 13 C -0.13 -2.11 4.87 -26.67 -0.13 -2.24 16 14 C -0.10 -1.22 1.93 -90.81 -0.17 -1.40 16 15 H 0.07 0.97 8.11 -51.93 -0.42 0.55 16 16 C -0.11 -1.08 5.33 -26.75 -0.14 -1.22 16 17 C -0.12 -1.00 5.90 -26.69 -0.16 -1.16 16 18 C -0.11 -0.93 5.91 -26.68 -0.16 -1.09 16 19 C -0.13 -1.24 5.56 -26.78 -0.15 -1.39 16 20 C 0.15 1.90 2.73 -68.73 -0.19 1.71 16 21 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 22 N -0.73 -12.04 5.26 -55.04 -0.29 -12.33 16 23 C 0.49 10.65 6.92 -11.50 -0.08 10.57 16 24 O -0.53 -14.43 17.51 5.56 0.10 -14.33 16 25 H 0.03 0.96 7.40 -51.93 -0.38 0.58 16 26 H 0.05 1.30 7.22 -51.93 -0.37 0.93 16 27 H 0.00 -0.04 6.29 -51.93 -0.33 -0.37 16 28 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.07 1.18 6.28 -51.93 -0.33 0.85 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.38 5.84 8.72 -40.82 -0.36 5.48 16 LS Contribution 301.15 15.07 4.54 4.54 Total: -1.00 -34.01 301.15 -8.01 -42.02 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -6.37 Total: 0.59 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: -1.11 Total: 4.43 kcal Atomic # 7 Polarization: -54.56 SS G_CDS: -0.15 Total: -54.70 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: 0.10 Total: -14.33 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.03 Total: 17.46 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -34.01 -8.01 -42.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595305643.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.780 kcal (2) G-P(sol) polarization free energy of solvation -34.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds