Wall clock time and date at job start Sun Mar 29 2020 23:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36936 * 120.00090 * 2 1 4 4 H 1.08001 * 120.00176 * 200.41453 * 3 2 1 5 5 C 1.38812 * 119.99974 * 20.42342 * 3 2 1 6 6 N 1.31616 * 119.99603 * 14.99607 * 5 3 2 7 7 Si 1.86796 * 120.00035 * 194.99313 * 5 3 2 8 8 H 1.48508 * 109.46858 * 84.99988 * 7 5 3 9 9 H 1.48495 * 109.47053 * 204.99790 * 7 5 3 10 10 H 1.48496 * 109.47446 * 325.00345 * 7 5 3 11 11 C 1.46508 * 119.99820 * 180.02562 * 2 1 3 12 12 H 1.09001 * 109.13256 * 179.48886 * 11 2 1 13 13 C 1.53181 * 109.30261 * 59.99950 * 11 2 1 14 14 C 1.52937 * 108.21316 * 192.82097 * 13 11 2 15 15 H 1.08997 * 109.43625 * 307.95675 * 14 13 11 16 16 C 1.52772 * 110.89841 * 187.27476 * 14 13 11 17 17 C 1.53194 * 108.87309 * 179.44103 * 16 14 13 18 18 C 1.52890 * 109.96419 * 59.43045 * 17 16 14 19 19 C 1.53204 * 109.95545 * 301.06934 * 18 17 16 20 20 C 1.52709 * 108.89503 * 59.32458 * 19 18 17 21 21 H 1.09000 * 108.75659 * 57.61530 * 20 19 18 22 22 N 1.45378 * 111.01600 * 177.23942 * 20 19 18 23 23 C 1.34303 * 122.68196 * 145.41896 * 22 20 19 24 24 O 1.21281 * 117.91865 * 175.28342 * 23 22 20 25 25 H 1.09000 * 109.47169 * 275.14257 * 1 2 3 26 26 H 1.09001 * 109.47473 * 35.14274 * 1 2 3 27 27 H 1.09003 * 109.47187 * 155.14513 * 1 2 3 28 28 H 0.97005 * 119.99476 * 180.02562 * 6 5 3 29 29 H 1.08998 * 109.71265 * 73.14179 * 13 11 2 30 30 H 1.08993 * 109.71208 * 312.50009 * 13 11 2 31 31 H 1.08994 * 109.56790 * 299.25705 * 16 14 13 32 32 H 1.08998 * 109.57073 * 59.62332 * 16 14 13 33 33 H 1.08998 * 109.39014 * 179.58214 * 17 16 14 34 34 H 1.09003 * 109.39004 * 299.37706 * 17 16 14 35 35 H 1.08997 * 109.39257 * 61.21901 * 18 17 16 36 36 H 1.09001 * 109.39246 * 181.02121 * 18 17 16 37 37 H 1.08997 * 109.56591 * 299.49788 * 19 18 17 38 38 H 1.08994 * 109.56933 * 179.14833 * 19 18 17 39 39 H 0.96998 * 118.40371 * 323.67948 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1788 1.2153 -0.3262 5 6 1.5210 2.3503 0.4195 6 7 0.3886 2.2829 1.0869 7 14 2.2824 4.0126 0.0369 8 1 1.8668 4.4465 -1.3212 9 1 1.8231 5.0093 1.0372 10 1 3.7623 3.9034 0.0903 11 6 2.1974 -1.2688 -0.0006 12 1 3.2679 -1.0634 -0.0097 13 6 1.8246 -2.0682 -1.2529 14 6 2.3376 -3.4982 -1.0776 15 1 3.3944 -3.4744 -0.8115 16 6 2.1582 -4.3031 -2.3636 17 6 2.6983 -5.7193 -2.1413 18 6 1.9436 -6.3918 -0.9942 19 6 2.0999 -5.5683 0.2882 20 6 1.5449 -4.1664 0.0465 21 1 0.5028 -4.2503 -0.2619 22 7 1.6112 -3.3635 1.2566 23 6 1.8511 -2.0422 1.2381 24 8 1.8015 -1.4413 2.2904 25 1 -0.3633 0.0921 1.0235 26 1 -0.3634 0.8403 -0.5915 27 1 -0.3634 -0.9325 -0.4320 28 1 -0.0508 3.0966 1.3797 29 1 2.2886 -1.6160 -2.1294 30 1 0.7414 -2.0784 -1.3736 31 1 1.0997 -4.3520 -2.6190 32 1 2.7094 -3.8251 -3.1734 33 1 2.5676 -6.3036 -3.0521 34 1 3.7586 -5.6675 -1.8937 35 1 0.8867 -6.4654 -1.2504 36 1 2.3472 -7.3913 -0.8322 37 1 3.1550 -5.5026 0.5535 38 1 1.5473 -6.0450 1.0978 39 1 1.4509 -3.7988 2.1085 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595305643.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:34:27 Heat of formation + Delta-G solvation = -51.868547 kcal Electronic energy + Delta-G solvation = -19776.243897 eV Core-core repulsion = 16910.547309 eV Total energy + Delta-G solvation = -2865.696588 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.62548 -39.15600 -37.41733 -35.31741 -34.33298 -32.57371 -30.23094 -29.46855 -28.09716 -25.54933 -23.78569 -23.40848 -22.67495 -20.83008 -19.81053 -18.90876 -17.86529 -17.46638 -16.90899 -16.03402 -15.70330 -15.37747 -15.27201 -15.01310 -14.76778 -14.53277 -14.17409 -13.82476 -13.45592 -13.11525 -12.89877 -12.69939 -12.57350 -12.47579 -12.39206 -12.27251 -12.03397 -11.96986 -11.59779 -11.34018 -11.32463 -11.06443 -10.65350 -10.51680 -9.91145 -8.87396 -7.84298 -5.33305 1.45145 1.48178 1.56669 1.75716 2.38834 2.52342 3.29316 3.47977 3.67017 3.81272 3.85006 3.95044 4.22324 4.28646 4.42783 4.47569 4.51288 4.57531 4.63202 4.67571 4.72866 4.98342 5.03467 5.11549 5.14977 5.26871 5.28057 5.34987 5.39487 5.40464 5.45436 5.56556 5.64914 5.65996 6.05619 6.24196 6.46023 7.07720 7.42841 7.79497 8.21851 9.19363 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.038583 B = 0.005933 C = 0.005521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.525291 B = 4718.596721 C = 5070.186525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.182 3.818 2 N -0.588 5.588 3 C -0.269 4.269 4 H 0.079 0.921 5 C -0.056 4.056 6 N -0.939 5.939 7 Si 0.978 3.022 8 H -0.276 1.276 9 H -0.298 1.298 10 H -0.268 1.268 11 C 0.159 3.841 12 H 0.085 0.915 13 C -0.114 4.114 14 C -0.090 4.090 15 H 0.076 0.924 16 C -0.104 4.104 17 C -0.118 4.118 18 C -0.111 4.111 19 C -0.121 4.121 20 C 0.141 3.859 21 H 0.067 0.933 22 N -0.716 5.716 23 C 0.491 3.509 24 O -0.597 6.597 25 H -0.012 1.012 26 H 0.026 0.974 27 H 0.032 0.968 28 H 0.247 0.753 29 H 0.080 0.920 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.645 -19.818 -9.192 22.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.309 5.309 3 C -0.399 4.399 4 H 0.097 0.903 5 C -0.251 4.251 6 N -0.585 5.585 7 Si 0.806 3.194 8 H -0.203 1.203 9 H -0.225 1.225 10 H -0.192 1.192 11 C 0.048 3.952 12 H 0.103 0.897 13 C -0.154 4.154 14 C -0.109 4.109 15 H 0.094 0.906 16 C -0.142 4.142 17 C -0.156 4.156 18 C -0.149 4.149 19 C -0.159 4.159 20 C 0.037 3.963 21 H 0.085 0.915 22 N -0.369 5.369 23 C 0.277 3.723 24 O -0.477 6.477 25 H 0.006 0.994 26 H 0.045 0.955 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.099 0.901 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 3.568 -19.243 -8.798 21.458 hybrid contribution -0.102 1.220 0.988 1.573 sum 3.466 -18.023 -7.810 19.946 Atomic orbital electron populations 1.20470 0.82710 0.96161 0.96960 1.44079 1.01962 1.00501 1.84370 1.19664 0.97738 0.85617 1.36872 0.90349 1.25940 0.98655 1.02355 0.98161 1.70339 1.20496 1.27236 1.40406 0.85121 0.78276 0.78810 0.77223 1.20251 1.22498 1.19235 1.20650 0.97407 0.86052 0.91069 0.89687 1.22040 1.01667 0.94603 0.97043 1.21378 0.99971 0.93359 0.96227 0.90594 1.21494 1.02252 0.95316 0.95092 1.21574 0.99998 0.95002 0.99009 1.21493 1.01422 0.98784 0.93233 1.21822 1.01722 0.92741 0.99616 1.21049 0.99912 0.91370 0.83990 0.91482 1.45960 1.72572 1.07460 1.10900 1.22433 0.75182 0.82252 0.92448 1.90685 1.53215 1.68580 1.35177 0.99359 0.95475 0.94931 0.94366 0.90110 0.91918 0.91199 0.90616 0.90245 0.91795 0.91238 0.90127 0.91373 0.90624 0.77179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.78 8.30 127.77 1.06 10.84 16 2 N -0.59 -31.50 2.56 -707.72 -1.81 -33.32 16 3 C -0.27 -15.65 9.61 84.03 0.81 -14.85 16 4 H 0.08 4.33 7.80 -2.91 -0.02 4.31 16 5 C -0.06 -3.34 5.06 84.86 0.43 -2.91 16 6 N -0.94 -60.02 10.67 21.65 0.23 -59.79 16 7 Si 0.98 47.15 29.58 68.60 2.03 49.18 16 8 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 9 H -0.30 -14.59 7.11 99.48 0.71 -13.89 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 11 C 0.16 6.86 2.77 44.11 0.12 6.98 16 12 H 0.09 3.70 7.83 -2.39 -0.02 3.68 16 13 C -0.11 -3.58 4.87 30.63 0.15 -3.43 16 14 C -0.09 -2.04 1.93 -10.92 -0.02 -2.06 16 15 H 0.08 1.76 8.11 -2.39 -0.02 1.74 16 16 C -0.10 -1.66 5.33 30.58 0.16 -1.49 16 17 C -0.12 -1.43 5.90 30.62 0.18 -1.25 16 18 C -0.11 -1.30 5.91 30.63 0.18 -1.12 16 19 C -0.12 -1.91 5.56 30.57 0.17 -1.74 16 20 C 0.14 3.20 2.73 45.08 0.12 3.33 16 21 H 0.07 1.50 8.14 -2.39 -0.02 1.49 16 22 N -0.72 -22.72 5.26 -446.71 -2.35 -25.07 16 23 C 0.49 21.60 6.92 87.54 0.61 22.20 16 24 O -0.60 -33.80 17.51 -3.03 -0.05 -33.85 16 25 H -0.01 -0.75 7.40 -2.39 -0.02 -0.76 16 26 H 0.03 1.52 7.22 -2.39 -0.02 1.50 16 27 H 0.03 1.47 6.29 -2.39 -0.02 1.46 16 28 H 0.25 15.27 8.31 -92.70 -0.77 14.50 16 29 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.06 2.04 6.28 -2.39 -0.02 2.03 16 31 H 0.07 1.08 8.14 -2.39 -0.02 1.07 16 32 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.08 1.07 8.14 -2.39 -0.02 1.06 16 39 H 0.39 11.56 8.72 -92.71 -0.81 10.75 16 Total: -1.00 -77.61 301.15 2.24 -75.37 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: 0.22 Total: 12.97 kcal Atomic # 6 Polarization: 10.53 SS G_CDS: 3.97 Total: 14.50 kcal Atomic # 7 Polarization: -114.25 SS G_CDS: -3.93 Total: -118.18 kcal Atomic # 8 Polarization: -33.80 SS G_CDS: -0.05 Total: -33.85 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 2.03 Total: 49.18 kcal Total: -77.61 2.24 -75.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595305643.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.503 kcal (2) G-P(sol) polarization free energy of solvation -77.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds