Wall clock time and date at job start Sun Mar 29 2020 23:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36934 * 120.00379 * 2 1 4 4 H 1.07998 * 120.00675 * 181.96438 * 3 2 1 5 5 C 1.38814 * 120.00038 * 1.97145 * 3 2 1 6 6 N 1.31620 * 119.99589 * 351.40881 * 5 3 2 7 7 Si 1.86801 * 120.00459 * 171.40903 * 5 3 2 8 8 H 1.48501 * 109.46936 * 89.99731 * 7 5 3 9 9 H 1.48498 * 109.47179 * 209.99887 * 7 5 3 10 10 H 1.48499 * 109.46915 * 330.00244 * 7 5 3 11 11 C 1.46507 * 120.00019 * 180.02562 * 2 1 3 12 12 H 1.08999 * 109.13347 * 53.44247 * 11 2 1 13 13 C 1.53180 * 109.30023 * 293.95281 * 11 2 1 14 14 C 1.52930 * 108.22259 * 286.56963 * 13 11 2 15 15 H 1.09003 * 109.43911 * 51.92375 * 14 13 11 16 16 C 1.52775 * 110.90228 * 172.74941 * 14 13 11 17 17 C 1.53188 * 108.98009 * 180.49229 * 16 14 13 18 18 C 1.52892 * 109.96314 * 300.76038 * 17 16 14 19 19 C 1.53199 * 110.05677 * 58.73737 * 18 17 16 20 20 C 1.52709 * 108.89115 * 300.73793 * 19 18 17 21 21 H 1.09007 * 108.03612 * 302.81402 * 20 19 18 22 22 N 1.45366 * 111.70248 * 183.23521 * 20 19 18 23 23 C 1.33631 * 123.18806 * 215.83808 * 22 20 19 24 24 O 1.21282 * 118.04944 * 183.80566 * 23 22 20 25 25 H 1.09001 * 109.47295 * 180.54951 * 1 2 3 26 26 H 1.09002 * 109.46967 * 300.55567 * 1 2 3 27 27 H 1.09007 * 109.47027 * 60.54837 * 1 2 3 28 28 H 0.97006 * 120.00168 * 180.02562 * 6 5 3 29 29 H 1.08994 * 109.71151 * 166.88563 * 13 11 2 30 30 H 1.09004 * 109.71255 * 46.25108 * 13 11 2 31 31 H 1.09007 * 109.56622 * 300.37509 * 16 14 13 32 32 H 1.09005 * 109.56964 * 60.61057 * 16 14 13 33 33 H 1.09002 * 109.38866 * 60.78318 * 17 16 14 34 34 H 1.09001 * 109.39109 * 180.48154 * 17 16 14 35 35 H 1.09000 * 109.28894 * 298.59082 * 18 17 16 36 36 H 1.09006 * 109.31232 * 178.89492 * 18 17 16 37 37 H 1.09000 * 109.57012 * 180.91230 * 19 18 17 38 38 H 1.08999 * 109.56981 * 60.55555 * 19 18 17 39 39 H 0.97003 * 118.40821 * 35.81336 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.2292 1.1862 -0.0321 5 6 1.4563 2.3877 0.0414 6 7 0.1467 2.3967 -0.0898 7 14 2.3818 3.9922 0.2832 8 1 2.7669 4.5457 -1.0399 9 1 1.5109 4.9640 0.9919 10 1 3.6034 3.7423 1.0897 11 6 2.1975 -1.2688 -0.0006 12 1 1.8449 -1.8845 -0.8280 13 6 1.9423 -2.0013 1.3203 14 6 2.7210 -1.2833 2.4235 15 1 2.4844 -0.2195 2.4010 16 6 2.3707 -1.8530 3.7971 17 6 3.1635 -1.0962 4.8673 18 6 4.6630 -1.2405 4.6056 19 6 5.0087 -0.6956 3.2162 20 6 4.2165 -1.4745 2.1684 21 1 4.4583 -2.5316 2.2795 22 7 4.5555 -1.0568 0.8180 23 6 3.6629 -0.9956 -0.1746 24 8 4.0608 -0.7021 -1.2821 25 1 -0.3634 -1.0276 0.0099 26 1 -0.3633 0.5225 0.8850 27 1 -0.3633 0.5053 -0.8949 28 1 -0.3379 3.2366 -0.0613 29 1 2.2846 -3.0331 1.2406 30 1 0.8771 -1.9834 1.5508 31 1 1.3029 -1.7330 3.9806 32 1 2.6302 -2.9112 3.8305 33 1 2.8931 -0.0406 4.8391 34 1 2.9250 -1.5033 5.8499 35 1 4.9383 -2.2937 4.6600 36 1 5.2161 -0.6823 5.3611 37 1 6.0760 -0.8170 3.0315 38 1 4.7450 0.3607 3.1622 39 1 5.4743 -0.8101 0.6282 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595305644.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:34:31 Heat of formation + Delta-G solvation = -20.990531 kcal Electronic energy + Delta-G solvation = -20330.795242 eV Core-core repulsion = 17466.437626 eV Total energy + Delta-G solvation = -2864.357616 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.31383 -37.80595 -35.57555 -33.99174 -32.67914 -30.71785 -29.10704 -27.98462 -26.08317 -23.91103 -22.40963 -21.82258 -21.42961 -19.88562 -18.31553 -16.86176 -16.47603 -15.63297 -15.31352 -14.46967 -14.41600 -14.05021 -13.77959 -13.60264 -13.07729 -13.02971 -12.56888 -12.18714 -12.04838 -11.82893 -11.38050 -11.24117 -11.15525 -10.91618 -10.70904 -10.60416 -10.37086 -10.25749 -10.09418 -9.99881 -9.84155 -9.66523 -8.91931 -8.54888 -8.44026 -6.91107 -5.59693 -3.01671 3.32696 3.42304 3.48318 3.49777 3.83853 4.54733 4.76270 4.78982 4.95682 5.22291 5.26718 5.41687 5.46031 5.49820 5.57059 5.60043 5.61749 5.68279 5.81575 5.95383 6.05051 6.14522 6.18647 6.24608 6.28107 6.39425 6.43026 6.48742 6.63893 6.75880 6.95348 7.38526 7.66059 7.74371 7.91094 7.98882 8.38274 8.93630 9.29361 9.88960 10.30823 11.39976 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.019232 B = 0.009200 C = 0.008614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.526921 B = 3042.643627 C = 3249.771611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.174 3.826 2 N -0.594 5.594 3 C -0.239 4.239 4 H 0.076 0.924 5 C -0.004 4.004 6 N -0.918 5.918 7 Si 0.905 3.095 8 H -0.289 1.289 9 H -0.290 1.290 10 H -0.283 1.283 11 C 0.170 3.830 12 H 0.060 0.940 13 C -0.135 4.135 14 C -0.095 4.095 15 H 0.100 0.900 16 C -0.106 4.106 17 C -0.122 4.122 18 C -0.111 4.111 19 C -0.130 4.130 20 C 0.151 3.849 21 H 0.058 0.942 22 N -0.720 5.720 23 C 0.541 3.459 24 O -0.553 6.553 25 H -0.007 1.007 26 H 0.041 0.959 27 H 0.049 0.951 28 H 0.249 0.751 29 H 0.053 0.947 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.840 -9.775 10.446 15.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.321 5.321 3 C -0.367 4.367 4 H 0.094 0.906 5 C -0.200 4.200 6 N -0.566 5.566 7 Si 0.735 3.265 8 H -0.216 1.216 9 H -0.216 1.216 10 H -0.209 1.209 11 C 0.059 3.941 12 H 0.077 0.923 13 C -0.175 4.175 14 C -0.114 4.114 15 H 0.118 0.882 16 C -0.144 4.144 17 C -0.160 4.160 18 C -0.149 4.149 19 C -0.168 4.168 20 C 0.045 3.955 21 H 0.076 0.924 22 N -0.372 5.372 23 C 0.329 3.671 24 O -0.429 6.429 25 H 0.011 0.989 26 H 0.060 0.940 27 H 0.068 0.932 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.092 0.908 39 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 5.689 -9.531 9.873 14.856 hybrid contribution 0.828 1.098 0.120 1.380 sum 6.518 -8.433 9.993 14.610 Atomic orbital electron populations 1.21038 0.80552 0.93064 1.02245 1.43922 1.02226 0.99088 1.86852 1.19327 0.90789 0.83429 1.43203 0.90623 1.24753 0.95690 0.97559 1.01949 1.70215 1.05348 1.24537 1.56542 0.86226 0.78557 0.83847 0.77847 1.21591 1.21631 1.20864 1.20288 0.87576 0.90335 0.95855 0.92255 1.22320 1.01123 0.97669 0.96414 1.21314 0.92552 1.03471 0.94066 0.88152 1.21492 1.00091 0.99009 0.93851 1.21574 0.94767 1.01311 0.98323 1.21447 0.96528 1.00872 0.96085 1.21857 0.99360 1.01175 0.94448 1.20699 0.95955 0.97261 0.81547 0.92432 1.45500 1.12033 1.69906 1.09745 1.20179 0.88750 0.74710 0.83497 1.90681 1.79752 1.47739 1.24759 0.98859 0.94011 0.93210 0.94043 0.92789 0.90816 0.91484 0.92365 0.91638 0.92237 0.92123 0.91965 0.91874 0.90820 0.77528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.32 8.42 59.84 0.50 4.83 16 2 N -0.59 -15.01 2.67 -175.05 -0.47 -15.48 16 3 C -0.24 -6.68 8.78 -15.06 -0.13 -6.81 16 4 H 0.08 2.17 5.93 -52.49 -0.31 1.86 16 5 C 0.00 -0.11 5.43 -17.43 -0.09 -0.20 16 6 N -0.92 -26.83 9.49 55.49 0.53 -26.30 16 7 Si 0.90 22.78 29.56 -169.99 -5.03 17.76 16 8 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 9 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 10 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 11 C 0.17 3.62 2.96 -69.29 -0.21 3.41 16 12 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 13 C -0.14 -2.26 4.94 -26.67 -0.13 -2.40 16 14 C -0.10 -1.49 1.92 -90.82 -0.17 -1.67 16 15 H 0.10 2.00 7.41 -51.93 -0.38 1.61 16 16 C -0.11 -1.32 5.32 -26.75 -0.14 -1.46 16 17 C -0.12 -1.37 5.91 -26.69 -0.16 -1.53 16 18 C -0.11 -1.15 5.90 -26.68 -0.16 -1.30 16 19 C -0.13 -1.60 5.60 -26.78 -0.15 -1.75 16 20 C 0.15 2.15 2.71 -68.73 -0.19 1.96 16 21 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 22 N -0.72 -12.42 5.24 -55.21 -0.29 -12.71 16 23 C 0.54 11.69 4.95 -11.80 -0.06 11.63 16 24 O -0.55 -14.11 17.31 5.56 0.10 -14.01 16 25 H -0.01 -0.15 7.40 -51.93 -0.38 -0.54 16 26 H 0.04 1.10 7.16 -51.93 -0.37 0.72 16 27 H 0.05 1.37 6.94 -51.92 -0.36 1.01 16 28 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.05 0.78 8.13 -51.93 -0.42 0.36 16 30 H 0.07 1.25 7.12 -51.93 -0.37 0.88 16 31 H 0.07 0.85 8.14 -51.92 -0.42 0.42 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.39 6.17 8.71 -40.82 -0.36 5.82 16 LS Contribution 296.97 15.07 4.48 4.48 Total: -1.00 -31.85 296.97 -8.09 -39.95 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -6.32 Total: 1.61 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: -1.09 Total: 4.71 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: -0.23 Total: -54.49 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: 0.10 Total: -14.01 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.03 Total: 17.76 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.85 -8.09 -39.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595305644.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.956 kcal (2) G-P(sol) polarization free energy of solvation -31.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds