Wall clock time and date at job start Sun Mar 29 2020 23:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99648 * 2 1 4 4 H 1.48507 * 109.46858 * 239.99550 * 3 2 1 5 5 H 1.48497 * 109.47404 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47225 * 119.99994 * 3 2 1 7 7 C 1.37875 * 120.00072 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99915 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00185 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.47278 * 179.97438 * 9 7 2 11 11 C 1.46896 * 111.00221 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47428 * 179.97438 * 11 10 9 13 13 C 1.53120 * 109.52440 * 174.99759 * 12 11 10 14 14 C 1.53034 * 109.27897 * 177.56259 * 13 12 11 15 15 N 1.46854 * 109.52043 * 300.82324 * 14 13 12 16 16 C 1.46903 * 110.99633 * 185.84169 * 15 14 13 17 17 C 1.53003 * 109.47061 * 170.00055 * 16 15 14 18 18 C 1.53001 * 117.51964 * 116.28123 * 17 16 15 19 19 C 1.52999 * 60.00190 * 107.47982 * 18 17 16 20 20 C 1.46837 * 111.20184 * 61.74214 * 15 14 13 21 21 C 1.53039 * 109.52401 * 298.25819 * 20 15 14 22 22 H 0.96998 * 120.00301 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46914 * 60.00267 * 9 7 2 24 24 H 1.08996 * 109.47302 * 299.99879 * 9 7 2 25 25 H 1.00906 * 110.99841 * 303.95198 * 10 9 7 26 26 H 1.09002 * 109.47294 * 59.99615 * 11 10 9 27 27 H 1.09002 * 109.47423 * 299.99930 * 11 10 9 28 28 H 1.09004 * 109.57173 * 54.84283 * 12 11 10 29 29 H 1.08999 * 109.49984 * 57.62036 * 13 12 11 30 30 H 1.08994 * 109.50265 * 297.50546 * 13 12 11 31 31 H 1.08997 * 109.46603 * 180.81037 * 14 13 12 32 32 H 1.09001 * 109.46437 * 60.83693 * 14 13 12 33 33 H 1.08999 * 109.47623 * 49.99557 * 16 15 14 34 34 H 1.09005 * 109.46959 * 289.99571 * 16 15 14 35 35 H 1.09002 * 115.54973 * 330.57907 * 17 16 15 36 36 H 1.09001 * 117.49733 * 214.97413 * 18 17 16 37 37 H 1.08995 * 117.49577 * 359.97438 * 18 17 16 38 38 H 1.09004 * 117.50150 * 252.51496 * 19 18 17 39 39 H 1.09004 * 117.49681 * 107.48417 * 19 18 17 40 40 H 1.09003 * 109.46507 * 58.27339 * 20 15 14 41 41 H 1.08998 * 109.46501 * 178.23763 * 20 15 14 42 42 H 1.09000 * 109.50097 * 299.23652 * 21 20 15 43 43 H 1.09001 * 109.50281 * 179.12010 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5055 -4.9070 -0.0001 12 6 2.5304 -6.0430 -0.0007 13 6 1.8058 -7.3860 0.1245 14 6 2.8306 -8.5208 0.0621 15 7 3.5596 -8.4543 -1.2110 16 6 4.4547 -9.6087 -1.3660 17 6 5.0045 -9.6398 -2.7935 18 6 6.5139 -9.4659 -2.9736 19 6 5.8704 -10.8369 -3.1911 20 6 4.3015 -7.1930 -1.3328 21 6 3.3206 -6.0185 -1.3120 22 1 -0.4850 0.8400 -0.0004 23 1 0.6248 -2.5571 -0.8897 24 1 0.6241 -2.5567 0.8903 25 1 2.8406 -3.5486 -0.7809 26 1 0.8808 -4.9812 -0.8903 27 1 0.8803 -4.9818 0.8897 28 1 3.2142 -5.9183 0.8390 29 1 1.0940 -7.4931 -0.6940 30 1 1.2758 -7.4262 1.0760 31 1 2.3165 -9.4791 0.1365 32 1 3.5339 -8.4210 0.8889 33 1 3.9010 -10.5269 -1.1698 34 1 5.2811 -9.5251 -0.6601 35 1 4.3541 -9.2133 -3.5571 36 1 6.8564 -8.9250 -3.8558 37 1 7.1155 -9.3289 -2.0751 38 1 6.0487 -11.6021 -2.4356 39 1 5.7896 -11.1979 -4.2165 40 1 4.9979 -7.0993 -0.4995 41 1 4.8557 -7.1868 -2.2713 42 1 2.6326 -6.1041 -2.1531 43 1 3.8729 -5.0818 -1.3868 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596066305.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:59:22 Heat of formation + Delta-G solvation = 9.377968 kcal Electronic energy + Delta-G solvation = -18549.725822 eV Core-core repulsion = 15822.518177 eV Total energy + Delta-G solvation = -2727.207645 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.42190 -37.47310 -35.49237 -33.27075 -31.81275 -30.76239 -28.16999 -26.20896 -24.15796 -23.27374 -22.54119 -21.67879 -20.87495 -20.45103 -19.45286 -16.62158 -16.32520 -15.33626 -15.07258 -14.86438 -14.72022 -14.49399 -13.89356 -13.68526 -13.42639 -13.14884 -12.61605 -12.52781 -12.18893 -11.94609 -11.77241 -11.54403 -11.28287 -11.23717 -11.08749 -10.83791 -10.70883 -10.57276 -10.33204 -10.23610 -10.15526 -9.95088 -9.73089 -9.12282 -8.44977 -8.38175 -7.22791 -6.00334 -4.02350 3.35248 3.38835 3.42109 3.50459 3.79949 4.45058 4.51903 4.67119 4.76271 4.90177 4.95365 4.98354 5.16249 5.25994 5.34195 5.35307 5.37171 5.47533 5.51732 5.55241 5.62613 5.63897 5.74941 5.84631 5.86586 5.88249 5.95452 6.04949 6.14189 6.26795 6.31747 6.36804 6.55528 6.72437 7.05610 7.07451 7.31206 7.47159 7.81751 8.17166 8.45317 8.67029 9.07001 9.62421 11.10832 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.036306 B = 0.003437 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.033145 B = 8144.590202 C = 8714.035127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.899 3.101 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.514 4.514 8 H 0.061 0.939 9 C 0.194 3.806 10 N -0.691 5.691 11 C 0.065 3.935 12 C -0.086 4.086 13 C -0.110 4.110 14 C 0.059 3.941 15 N -0.536 5.536 16 C 0.086 3.914 17 C -0.144 4.144 18 C -0.184 4.184 19 C -0.180 4.180 20 C 0.060 3.940 21 C -0.113 4.113 22 H 0.262 0.738 23 H -0.015 1.015 24 H 0.027 0.973 25 H 0.327 0.673 26 H 0.018 0.982 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.031 0.969 33 H 0.075 0.925 34 H 0.032 0.968 35 H 0.113 0.887 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.030 0.970 41 H 0.074 0.926 42 H 0.066 0.934 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.062 -21.016 -3.886 23.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.553 4.553 8 H 0.079 0.921 9 C 0.067 3.933 10 N -0.322 5.322 11 C -0.065 4.065 12 C -0.105 4.105 13 C -0.149 4.149 14 C -0.069 4.069 15 N -0.261 5.261 16 C -0.042 4.042 17 C -0.162 4.162 18 C -0.221 4.221 19 C -0.218 4.218 20 C -0.068 4.068 21 C -0.151 4.151 22 H 0.071 0.929 23 H 0.003 0.997 24 H 0.045 0.955 25 H 0.144 0.856 26 H 0.036 0.964 27 H 0.080 0.920 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.049 0.951 33 H 0.093 0.907 34 H 0.050 0.950 35 H 0.131 0.869 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.049 0.951 41 H 0.093 0.907 42 H 0.085 0.915 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.627 -20.880 -3.561 22.870 hybrid contribution 0.643 0.935 -0.260 1.164 sum 9.269 -19.944 -3.821 22.322 Atomic orbital electron populations 1.69954 1.06090 1.26862 1.50916 1.24995 0.94877 0.99353 0.95380 0.86543 0.79419 0.82680 0.78639 1.20262 1.21349 1.20165 1.21168 0.93459 0.90338 1.50342 0.92066 1.19535 0.90641 0.87446 0.95676 1.60705 1.21248 1.01408 1.48856 1.21886 0.94932 0.90071 0.99587 1.21225 0.97497 0.93854 0.97885 1.21605 0.97601 0.93633 1.02032 1.22063 0.96144 0.99301 0.89403 1.61914 1.28053 1.02003 1.34149 1.21637 0.94684 0.94021 0.93839 1.22306 0.93000 1.02473 0.98460 1.23062 0.95717 1.00032 1.03311 1.22942 1.04803 0.91600 1.02406 1.22088 0.95070 0.88963 1.00679 1.21657 0.98190 0.97116 0.98121 0.92875 0.99702 0.95534 0.85594 0.96426 0.91996 0.90937 0.91230 0.91517 0.91126 0.95074 0.90652 0.94957 0.86940 0.88851 0.89040 0.89007 0.88810 0.95146 0.90750 0.91510 0.90937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.34 13.29 55.43 0.74 -26.60 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.99 29.54 -169.99 -5.02 16.96 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 7 C -0.51 -14.91 9.32 -34.44 -0.32 -15.23 16 8 H 0.06 1.74 7.81 -52.49 -0.41 1.32 16 9 C 0.19 5.23 5.44 -4.98 -0.03 5.21 16 10 N -0.69 -15.23 6.49 -115.06 -0.75 -15.98 16 11 C 0.07 1.19 5.15 -3.83 -0.02 1.17 16 12 C -0.09 -1.25 2.46 -90.50 -0.22 -1.47 16 13 C -0.11 -1.36 5.38 -26.65 -0.14 -1.51 16 14 C 0.06 0.64 5.46 -3.83 -0.02 0.62 16 15 N -0.54 -6.04 4.66 -234.67 -1.09 -7.13 16 16 C 0.09 0.82 5.24 -3.82 -0.02 0.80 16 17 C -0.14 -1.27 4.70 -90.61 -0.43 -1.70 16 18 C -0.18 -1.48 10.18 -26.73 -0.27 -1.75 16 19 C -0.18 -1.34 10.25 -26.73 -0.27 -1.61 16 20 C 0.06 0.71 5.31 -3.84 -0.02 0.69 16 21 C -0.11 -1.54 5.09 -26.65 -0.14 -1.68 16 22 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 23 H -0.01 -0.42 8.14 -51.93 -0.42 -0.85 16 24 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.33 6.86 7.05 -39.29 -0.28 6.58 16 26 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.68 8.01 -51.93 -0.42 0.27 16 32 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.08 0.66 7.99 -51.93 -0.41 0.25 16 34 H 0.03 0.31 7.86 -51.93 -0.41 -0.10 16 35 H 0.11 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.09 0.72 8.03 -51.93 -0.42 0.31 16 38 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.84 7.10 -51.93 -0.37 0.47 16 42 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.07 1.04 6.81 -51.93 -0.35 0.69 16 LS Contribution 337.69 15.07 5.09 5.09 Total: -1.00 -30.07 337.69 -11.15 -41.23 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -8.12 Total: 1.38 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: -2.00 Total: -14.95 kcal Atomic # 7 Polarization: -48.61 SS G_CDS: -1.10 Total: -49.71 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.07 -11.15 -41.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596066305.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.607 kcal (2) G-P(sol) polarization free energy of solvation -30.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds