Wall clock time and date at job start Sun Mar 29 2020 23:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.48264 * 111.00145 * 2 1 4 4 C 1.52367 * 85.65534 * 223.44653 * 3 2 1 5 5 C 1.48265 * 110.99717 * 260.28712 * 2 1 3 6 6 C 1.53656 * 116.38395 * 141.49010 * 4 3 2 7 7 C 1.54598 * 102.73632 * 95.44679 * 6 4 3 8 8 N 1.47139 * 107.36372 * 20.76391 * 7 6 4 9 9 C 1.34779 * 125.58565 * 180.93028 * 8 7 6 10 10 O 1.21279 * 119.99574 * 180.02562 * 9 8 7 11 11 C 1.50696 * 120.00208 * 0.02562 * 9 8 7 12 12 C 1.52997 * 109.47055 * 179.97438 * 11 9 8 13 13 C 1.50706 * 109.47238 * 179.97438 * 12 11 9 14 14 H 1.07999 * 119.99515 * 0.02562 * 13 12 11 15 15 C 1.37870 * 120.00176 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00200 * 180.02562 * 15 13 12 17 17 Si 1.86802 * 120.00139 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.47145 * 89.99836 * 17 15 13 19 19 H 1.48496 * 109.47547 * 210.00333 * 17 15 13 20 20 H 1.48499 * 109.47030 * 330.00237 * 17 15 13 21 21 C 1.47718 * 108.82321 * 1.18736 * 8 7 6 22 22 H 1.08997 * 109.47172 * 59.99921 * 1 2 3 23 23 H 1.08996 * 109.47357 * 180.02562 * 1 2 3 24 24 H 1.09009 * 109.47012 * 299.99848 * 1 2 3 25 25 H 1.09001 * 113.84832 * 109.25553 * 3 2 1 26 26 H 1.09005 * 113.83999 * 337.62291 * 3 2 1 27 27 H 1.09000 * 113.84161 * 22.37924 * 5 2 1 28 28 H 1.09001 * 113.84561 * 250.74045 * 5 2 1 29 29 H 1.09001 * 110.75771 * 337.13465 * 6 4 3 30 30 H 1.09001 * 110.91935 * 213.83814 * 6 4 3 31 31 H 1.09001 * 109.87073 * 261.31383 * 7 6 4 32 32 H 1.09000 * 109.86815 * 140.20766 * 7 6 4 33 33 H 1.09001 * 109.47328 * 60.00147 * 11 9 8 34 34 H 1.09004 * 109.47043 * 299.99957 * 11 9 8 35 35 H 1.09001 * 109.46832 * 59.99966 * 12 11 9 36 36 H 1.09000 * 109.47611 * 300.00263 * 12 11 9 37 37 H 0.96999 * 120.00061 * 179.97438 * 16 15 13 38 38 H 1.09004 * 110.39428 * 96.06720 * 21 8 7 39 39 H 1.08999 * 110.40241 * 218.47665 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0004 1.3841 0.0000 4 6 2.9888 0.8811 -1.0448 5 6 2.0003 -0.2335 -1.3644 6 6 3.3217 1.8483 -2.1914 7 6 4.6200 2.5276 -1.6982 8 7 5.2161 1.6483 -0.6800 9 6 6.3501 1.8974 0.0045 10 8 6.7514 1.0986 0.8241 11 6 7.1192 3.1684 -0.2484 12 6 8.3555 3.2041 0.6523 13 6 9.1251 4.4748 0.3990 14 1 8.7678 5.1860 -0.3312 15 6 10.2851 4.7295 1.0992 16 7 10.9564 5.8387 0.8784 17 14 10.9026 3.4998 2.3625 18 1 11.8087 2.5254 1.7031 19 1 11.6415 4.2176 3.4321 20 1 9.7484 2.7787 2.9567 21 6 4.3714 0.4451 -0.5357 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8901 25 1 2.4653 1.6778 0.9412 26 1 1.2976 2.1259 -0.3796 27 1 1.2975 0.0155 -2.1594 28 1 2.4652 -1.2107 -1.4949 29 1 2.5266 2.5826 -2.3206 30 1 3.4984 1.3052 -3.1198 31 1 4.3868 3.4977 -1.2593 32 1 5.3121 2.6524 -2.5309 33 1 6.4848 4.0270 -0.0282 34 1 7.4290 3.2038 -1.2929 35 1 8.9900 2.3455 0.4326 36 1 8.0454 3.1688 1.6967 37 1 11.7723 6.0180 1.3714 38 1 4.7638 -0.3697 -1.1442 39 1 4.3131 0.1451 0.5106 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597567005.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:10 Heat of formation + Delta-G solvation = -2.048043 kcal Electronic energy + Delta-G solvation = -18679.567378 eV Core-core repulsion = 15816.031170 eV Total energy + Delta-G solvation = -2863.536208 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.14627 -38.98683 -36.36982 -33.47005 -31.86987 -31.07417 -29.69721 -27.48404 -26.62236 -25.55841 -23.62050 -21.92729 -20.93862 -19.06288 -18.66967 -17.16779 -16.40179 -16.16509 -15.84879 -15.41929 -15.00625 -14.59134 -14.16790 -13.97032 -13.65054 -13.31199 -12.82950 -12.73649 -12.54100 -12.32654 -12.14321 -11.88775 -11.59306 -11.37889 -11.20950 -10.94491 -10.90706 -10.71032 -10.12104 -10.01104 -9.75282 -9.21467 -9.13764 -9.11370 -8.49477 -8.43277 -6.01042 -3.99626 3.13706 3.19205 3.40253 3.46646 3.53753 3.58388 4.04542 4.14225 4.52569 4.53361 4.73042 4.73522 4.98306 5.01727 5.05577 5.14551 5.33907 5.34607 5.34896 5.44237 5.50154 5.52628 5.63232 5.70861 5.78457 5.83921 5.94149 5.96831 6.09886 6.15108 6.46776 6.67370 6.71980 7.39526 7.46525 7.75674 7.83927 8.51643 8.66092 9.01902 9.62245 11.11790 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.045331 B = 0.004150 C = 0.003991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.534326 B = 6744.590943 C = 7014.645014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.010 4.010 2 N -0.484 5.484 3 C 0.019 3.981 4 C -0.103 4.103 5 C 0.019 3.981 6 C -0.120 4.120 7 C 0.104 3.896 8 N -0.630 5.630 9 C 0.526 3.474 10 O -0.538 6.538 11 C -0.116 4.116 12 C 0.001 3.999 13 C -0.524 4.524 14 H 0.072 0.928 15 C 0.069 3.931 16 N -0.904 5.904 17 Si 0.877 3.123 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.261 1.261 21 C 0.136 3.864 22 H 0.034 0.966 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.093 0.907 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.093 0.907 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.019 0.981 36 H 0.024 0.976 37 H 0.263 0.737 38 H 0.067 0.933 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.027 -9.669 -7.569 25.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 N -0.206 5.206 3 C -0.110 4.110 4 C -0.104 4.104 5 C -0.110 4.110 6 C -0.158 4.158 7 C -0.019 4.019 8 N -0.367 5.367 9 C 0.317 3.683 10 O -0.414 6.414 11 C -0.156 4.156 12 C -0.037 4.037 13 C -0.562 4.562 14 H 0.090 0.910 15 C -0.132 4.132 16 N -0.543 5.543 17 Si 0.704 3.296 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.185 1.185 21 C 0.013 3.987 22 H 0.052 0.948 23 H 0.088 0.912 24 H 0.087 0.913 25 H 0.112 0.888 26 H 0.092 0.908 27 H 0.093 0.907 28 H 0.111 0.889 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.037 0.963 36 H 0.042 0.958 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -21.410 -10.428 -6.464 24.677 hybrid contribution -0.050 0.058 -0.106 0.131 sum -21.461 -10.371 -6.570 24.724 Atomic orbital electron populations 1.22861 0.89661 1.02395 1.01031 1.68573 1.08991 1.18712 1.24356 1.23779 0.96035 0.91172 1.00005 1.22422 0.95057 0.96555 0.96357 1.23779 0.96271 0.99650 0.91293 1.22494 0.97223 0.98330 0.97787 1.22009 0.94255 0.94144 0.91536 1.48780 1.25199 1.21435 1.41253 1.21274 0.78664 0.89158 0.79192 1.90662 1.67293 1.49226 1.34252 1.21645 0.98411 0.92611 1.02911 1.19386 0.91761 0.97508 0.95051 1.21107 1.07732 1.03890 1.23444 0.90956 1.24966 0.96353 0.95198 0.96715 1.69911 1.17159 1.24941 1.42316 0.86798 0.79513 0.81604 0.81676 1.20227 1.21437 1.18498 1.21650 0.86626 0.88212 1.02198 0.94785 0.91155 0.91321 0.88845 0.90789 0.90663 0.88882 0.90046 0.90054 0.91143 0.91104 0.89734 0.89750 0.96272 0.95811 0.92733 0.91467 0.89909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.08 9.64 60.07 0.58 0.50 16 2 N -0.48 -4.57 6.55 -255.22 -1.67 -6.24 16 3 C 0.02 0.17 7.32 -3.39 -0.02 0.15 16 4 C -0.10 -0.94 0.99 -154.67 -0.15 -1.10 16 5 C 0.02 0.15 7.35 -3.39 -0.02 0.12 16 6 C -0.12 -0.94 6.35 -25.55 -0.16 -1.10 16 7 C 0.10 1.11 6.50 -2.85 -0.02 1.10 16 8 N -0.63 -9.26 3.34 -170.80 -0.57 -9.83 16 9 C 0.53 10.21 7.85 -10.99 -0.09 10.13 16 10 O -0.54 -12.61 16.26 5.56 0.09 -12.52 16 11 C -0.12 -2.34 4.83 -27.89 -0.13 -2.48 16 12 C 0.00 0.02 3.33 -27.88 -0.09 -0.07 16 13 C -0.52 -15.19 9.66 -34.44 -0.33 -15.53 16 14 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 15 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 16 N -0.90 -28.27 13.96 55.43 0.77 -27.50 16 17 Si 0.88 22.91 27.47 -169.99 -4.67 18.24 16 18 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 19 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 20 H -0.26 -6.81 6.54 56.52 0.37 -6.44 16 21 C 0.14 1.73 6.31 -3.04 -0.02 1.71 16 22 H 0.03 0.21 7.64 -51.93 -0.40 -0.19 16 23 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.07 0.49 8.14 -51.92 -0.42 0.06 16 25 H 0.09 1.02 8.13 -51.93 -0.42 0.60 16 26 H 0.07 0.56 7.83 -51.93 -0.41 0.16 16 27 H 0.08 0.47 7.63 -51.93 -0.40 0.07 16 28 H 0.09 0.72 8.12 -51.93 -0.42 0.30 16 29 H 0.08 0.51 7.99 -51.93 -0.41 0.09 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 34 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 35 H 0.02 0.50 7.53 -51.93 -0.39 0.11 16 36 H 0.02 0.63 7.16 -51.93 -0.37 0.26 16 37 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.08 1.23 8.00 -51.93 -0.42 0.81 16 LS Contribution 315.37 15.07 4.75 4.75 Total: -1.00 -34.40 315.37 -8.47 -42.86 By element: Atomic # 1 Polarization: 1.42 SS G_CDS: -6.60 Total: -5.18 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: -0.57 Total: -4.59 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: -1.47 Total: -43.57 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: 0.09 Total: -12.52 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -4.67 Total: 18.24 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -34.40 -8.47 -42.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597567005.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.816 kcal (2) G-P(sol) polarization free energy of solvation -34.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds