Wall clock time and date at job start Sun Mar 29 2020 23:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46905 * 111.00164 * 2 1 4 4 C 1.46905 * 111.00064 * 123.95121 * 2 1 3 5 5 C 1.50701 * 115.54845 * 301.85161 * 4 2 1 6 6 O 1.21278 * 119.99864 * 112.85229 * 5 4 2 7 7 N 1.34776 * 119.99974 * 293.11745 * 5 4 2 8 8 C 1.46499 * 119.99850 * 183.48603 * 7 5 4 9 9 C 1.53004 * 109.46992 * 184.97476 * 8 7 5 10 10 C 1.50704 * 115.54842 * 280.69556 * 9 8 7 11 11 H 1.07999 * 120.00021 * 146.15796 * 10 9 8 12 12 C 1.37879 * 119.99689 * 326.15916 * 10 9 8 13 13 N 1.31520 * 119.99696 * 168.02438 * 12 10 9 14 14 Si 1.86795 * 120.00215 * 348.02444 * 12 10 9 15 15 H 1.48504 * 109.46999 * 95.49557 * 14 12 10 16 16 H 1.48506 * 109.46969 * 215.49013 * 14 12 10 17 17 H 1.48496 * 109.47445 * 335.49642 * 14 12 10 18 18 C 1.52999 * 117.49780 * 134.99083 * 9 8 7 19 19 C 1.53001 * 117.50047 * 66.36282 * 9 8 7 20 20 C 1.53000 * 117.51517 * 87.55062 * 4 2 1 21 21 C 1.53002 * 117.49714 * 156.17974 * 4 2 1 22 22 H 1.09000 * 109.47069 * 292.65973 * 1 2 3 23 23 H 1.08994 * 109.47052 * 52.66235 * 1 2 3 24 24 H 1.08997 * 109.46973 * 172.66059 * 1 2 3 25 25 H 1.08994 * 109.47325 * 185.81937 * 3 2 1 26 26 H 1.09001 * 109.46598 * 305.81856 * 3 2 1 27 27 H 1.08994 * 109.46821 * 65.81479 * 3 2 1 28 28 H 0.96995 * 119.99995 * 3.48781 * 7 5 4 29 29 H 1.08999 * 109.47089 * 304.97469 * 8 7 5 30 30 H 1.08998 * 109.47162 * 64.97639 * 8 7 5 31 31 H 0.96997 * 120.00375 * 185.00579 * 13 12 10 32 32 H 1.08991 * 117.50095 * 359.97438 * 18 9 8 33 33 H 1.08997 * 117.49812 * 145.02288 * 18 9 8 34 34 H 1.09000 * 117.49835 * 214.97778 * 19 9 8 35 35 H 1.09001 * 117.49850 * 359.97438 * 19 9 8 36 36 H 1.09000 * 117.49912 * 214.97067 * 20 4 2 37 37 H 1.09000 * 117.50262 * 359.97438 * 20 4 2 38 38 H 1.09000 * 117.50073 * 359.97438 * 21 4 2 39 39 H 1.09001 * 117.49667 * 144.97650 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7659 1.1377 5 6 1.5586 -0.2904 2.4993 6 8 0.8338 -0.9846 3.1802 7 7 1.9689 0.9086 2.9580 8 6 1.6074 1.3379 4.3112 9 6 2.0872 2.7732 4.5362 10 6 3.5519 2.9263 4.8559 11 1 4.0922 3.7952 4.5103 12 6 4.2023 1.9569 5.5897 13 7 5.5150 1.9637 5.6707 14 14 3.2191 0.6341 6.4687 15 1 3.1464 -0.5785 5.6145 16 1 3.8827 0.2955 7.7533 17 1 1.8466 1.1335 6.7370 18 6 1.1129 3.7478 5.2010 19 6 1.4256 3.8772 3.7088 20 6 2.1947 -2.2707 0.9451 21 6 3.4078 -1.3404 1.0095 22 1 -0.3633 0.3959 0.9483 23 1 -0.3633 0.6233 -0.8170 24 1 -0.3633 -1.0192 -0.1313 25 1 3.0801 1.3443 -0.1042 26 1 1.5642 1.9261 -0.8333 27 1 1.7327 1.8615 0.9374 28 1 2.5035 1.4872 2.3922 29 1 0.5247 1.2940 4.4292 30 1 2.0793 0.6787 5.0398 31 1 5.9766 1.2419 6.1255 32 1 0.1301 3.3666 5.4777 33 1 1.5313 4.4999 5.8698 34 1 2.0497 4.7143 3.3961 35 1 0.6489 3.5808 3.0038 36 1 2.0097 -2.9167 1.8034 37 1 1.9347 -2.6927 -0.0256 38 1 3.9461 -1.1505 0.0809 39 1 4.0210 -1.3741 1.9100 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597610927.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:21:26 Heat of formation + Delta-G solvation = 41.543718 kcal Electronic energy + Delta-G solvation = -19804.277386 eV Core-core repulsion = 16942.631459 eV Total energy + Delta-G solvation = -2861.645928 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.16421 -37.67943 -36.71770 -34.36502 -33.39029 -32.33688 -27.78582 -27.38146 -25.50170 -24.44717 -22.24617 -22.19591 -21.48560 -19.76955 -18.96965 -17.21660 -16.54426 -16.05714 -15.69964 -15.28767 -14.61170 -14.35797 -14.12520 -13.64988 -13.59138 -13.26700 -13.00218 -12.51238 -12.17499 -12.11063 -11.85009 -11.67729 -11.39941 -11.07079 -10.72447 -10.67006 -10.56396 -10.28981 -10.02371 -9.82449 -9.58217 -9.39105 -9.08879 -8.58332 -8.32828 -8.27714 -6.27350 -4.23764 2.84414 3.21164 3.33250 3.33432 3.45314 3.71866 3.87970 4.24829 4.65284 4.89505 5.04181 5.09909 5.10664 5.25042 5.40453 5.50578 5.52475 5.59853 5.70863 5.72773 5.76627 5.88432 5.94900 5.97735 6.04994 6.09115 6.23197 6.34120 6.39560 6.58234 6.78208 6.84267 6.90604 6.95527 7.05243 7.58157 7.99701 8.33579 8.59563 8.75187 9.34721 10.82460 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.021449 B = 0.008602 C = 0.007562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.093913 B = 3254.090927 C = 3701.628562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.494 5.494 3 C 0.007 3.993 4 C -0.003 4.003 5 C 0.519 3.481 6 O -0.549 6.549 7 N -0.699 5.699 8 C 0.145 3.855 9 C -0.006 4.006 10 C -0.490 4.490 11 H 0.081 0.919 12 C 0.081 3.919 13 N -0.884 5.884 14 Si 0.891 3.109 15 H -0.280 1.280 16 H -0.298 1.298 17 H -0.265 1.265 18 C -0.199 4.199 19 C -0.187 4.187 20 C -0.130 4.130 21 C -0.145 4.145 22 H 0.029 0.971 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.040 0.960 28 H 0.407 0.593 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.268 0.732 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.102 0.898 37 H 0.107 0.893 38 H 0.110 0.890 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.547 -3.452 -10.918 13.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.218 5.218 3 C -0.141 4.141 4 C -0.096 4.096 5 C 0.302 3.698 6 O -0.426 6.426 7 N -0.351 5.351 8 C 0.023 3.977 9 C -0.007 4.007 10 C -0.526 4.526 11 H 0.099 0.901 12 C -0.124 4.124 13 N -0.519 5.519 14 Si 0.724 3.276 15 H -0.208 1.208 16 H -0.226 1.226 17 H -0.191 1.191 18 C -0.238 4.238 19 C -0.225 4.225 20 C -0.168 4.168 21 C -0.183 4.183 22 H 0.048 0.952 23 H 0.089 0.911 24 H 0.089 0.911 25 H 0.095 0.905 26 H 0.092 0.908 27 H 0.059 0.941 28 H 0.245 0.755 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.108 0.892 34 H 0.104 0.896 35 H 0.089 0.911 36 H 0.120 0.880 37 H 0.125 0.875 38 H 0.128 0.872 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -6.713 -4.197 -10.709 13.317 hybrid contribution -0.547 0.066 1.047 1.183 sum -7.260 -4.131 -9.662 12.772 Atomic orbital electron populations 1.22393 0.86771 1.02660 1.00653 1.62096 1.08285 1.14120 1.37298 1.22672 1.01647 0.88303 1.01453 1.21694 1.02769 0.97489 0.87683 1.20326 0.80577 0.81603 0.87262 1.90646 1.36982 1.55775 1.59186 1.46337 1.53764 1.18270 1.16768 1.21434 0.97988 0.95838 0.82466 1.19538 0.94737 0.86130 1.00334 1.20306 0.89619 1.08755 1.33946 0.90097 1.24992 0.94656 0.97495 0.95209 1.69861 1.07184 1.32627 1.42278 0.86796 0.80198 0.81919 0.78724 1.20797 1.22599 1.19100 1.23144 0.99973 1.05809 0.94837 1.22779 1.03269 1.02999 0.93424 1.23004 1.00272 0.89778 1.03751 1.23160 0.89439 1.01457 1.04256 0.95185 0.91066 0.91061 0.90480 0.90768 0.94128 0.75535 0.92670 0.92750 0.92195 0.91201 0.89203 0.89583 0.91067 0.87962 0.87505 0.87217 0.87965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.46 60.07 0.57 0.86 16 2 N -0.49 -6.61 5.09 -236.75 -1.21 -7.81 16 3 C 0.01 0.09 8.97 60.07 0.54 0.63 16 4 C 0.00 -0.04 1.40 -132.75 -0.19 -0.23 16 5 C 0.52 10.18 5.85 -10.99 -0.06 10.12 16 6 O -0.55 -12.55 16.72 5.56 0.09 -12.46 16 7 N -0.70 -14.01 4.88 -60.29 -0.29 -14.31 16 8 C 0.15 3.26 4.48 -4.04 -0.02 3.25 16 9 C -0.01 -0.14 1.31 -155.66 -0.20 -0.34 16 10 C -0.49 -13.00 9.59 -34.44 -0.33 -13.33 16 11 H 0.08 2.31 8.06 -52.49 -0.42 1.89 16 12 C 0.08 2.24 5.43 -17.82 -0.10 2.14 16 13 N -0.88 -25.76 13.95 55.43 0.77 -24.99 16 14 Si 0.89 22.51 24.29 -169.99 -4.13 18.38 16 15 H -0.28 -7.24 6.96 56.52 0.39 -6.84 16 16 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 17 H -0.27 -6.51 6.56 56.52 0.37 -6.14 16 18 C -0.20 -4.06 9.88 -26.73 -0.26 -4.32 16 19 C -0.19 -3.59 9.93 -26.73 -0.27 -3.85 16 20 C -0.13 -1.77 9.99 -26.73 -0.27 -2.04 16 21 C -0.15 -2.00 10.15 -26.73 -0.27 -2.27 16 22 H 0.03 0.44 7.27 -51.93 -0.38 0.06 16 23 H 0.07 0.73 8.04 -51.93 -0.42 0.32 16 24 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.07 0.76 8.05 -51.93 -0.42 0.35 16 27 H 0.04 0.56 5.38 -51.93 -0.28 0.28 16 28 H 0.41 7.60 6.06 -40.82 -0.25 7.35 16 29 H 0.06 1.21 7.92 -51.93 -0.41 0.80 16 30 H 0.06 1.36 1.63 -51.93 -0.08 1.28 16 31 H 0.27 7.39 8.32 -40.82 -0.34 7.05 16 32 H 0.07 1.32 8.09 -51.93 -0.42 0.90 16 33 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16 34 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 35 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.10 1.49 8.03 -51.93 -0.42 1.07 16 37 H 0.11 1.23 8.14 -51.93 -0.42 0.80 16 38 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 LS Contribution 313.97 15.07 4.73 4.73 Total: -1.00 -30.52 313.97 -6.94 -37.46 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -6.05 Total: 8.38 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: -0.86 Total: -9.39 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: -0.73 Total: -47.11 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: 0.09 Total: -12.46 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.13 Total: 18.38 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.52 -6.94 -37.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597610927.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.006 kcal (2) G-P(sol) polarization free energy of solvation -30.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds