Wall clock time and date at job start Sun Mar 29 2020 23:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.48604 * 110.99815 * 2 1 4 4 C 1.54495 * 104.60589 * 201.19263 * 3 2 1 5 5 C 1.53821 * 104.89043 * 23.80219 * 4 3 2 6 6 C 1.48671 * 110.99915 * 244.49644 * 2 1 3 7 7 C 1.52489 * 110.21065 * 240.89555 * 5 4 3 8 8 C 1.53129 * 109.60200 * 298.05764 * 7 5 4 9 9 C 1.53180 * 109.29919 * 299.49573 * 8 7 5 10 10 N 1.46934 * 108.89300 * 55.05789 * 9 8 7 11 11 C 1.34772 * 120.68198 * 125.98590 * 10 9 8 12 12 O 1.21694 * 120.00288 * 175.01514 * 11 10 9 13 13 C 1.46377 * 120.00136 * 355.02187 * 11 10 9 14 14 H 1.07997 * 120.00122 * 15.78239 * 13 11 10 15 15 C 1.40055 * 119.99939 * 195.79251 * 13 11 10 16 16 N 1.30666 * 120.00018 * 190.24030 * 15 13 11 17 17 Si 1.86797 * 119.99881 * 10.24296 * 15 13 11 18 18 H 1.48503 * 109.46906 * 275.36216 * 17 15 13 19 19 H 1.48498 * 109.47512 * 35.36410 * 17 15 13 20 20 H 1.48496 * 109.47027 * 155.36390 * 17 15 13 21 21 C 1.47034 * 118.63454 * 306.25424 * 10 9 8 22 22 H 1.08997 * 109.47309 * 60.12467 * 1 2 3 23 23 H 1.09004 * 109.47227 * 180.12206 * 1 2 3 24 24 H 1.09003 * 109.47123 * 300.12565 * 1 2 3 25 25 H 1.09004 * 110.40721 * 82.41516 * 3 2 1 26 26 H 1.08995 * 110.41098 * 319.97911 * 3 2 1 27 27 H 1.08995 * 110.35678 * 264.95034 * 4 3 2 28 28 H 1.09002 * 110.44284 * 142.70115 * 4 3 2 29 29 H 1.08993 * 110.43065 * 39.89200 * 6 2 1 30 30 H 1.09005 * 110.42318 * 277.40044 * 6 2 1 31 31 H 1.09000 * 109.44863 * 178.02118 * 7 5 4 32 32 H 1.08997 * 109.44770 * 58.09835 * 7 5 4 33 33 H 1.09007 * 109.49943 * 179.54579 * 8 7 5 34 34 H 1.09005 * 109.49944 * 59.44586 * 8 7 5 35 35 H 1.09001 * 109.56334 * 295.23460 * 9 8 7 36 36 H 1.08996 * 109.66648 * 174.93919 * 9 8 7 37 37 H 0.96996 * 120.00113 * 179.97438 * 16 15 13 38 38 H 1.09003 * 109.58424 * 172.32069 * 21 10 9 39 39 H 1.08997 * 109.58457 * 292.73633 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0015 1.3874 0.0000 4 6 3.4424 1.2516 -0.5405 5 6 3.4355 -0.0488 -1.3621 6 6 2.0018 -0.5976 -1.2527 7 6 4.4276 -1.0475 -0.7760 8 6 5.8430 -0.4673 -0.8464 9 6 6.2079 -0.1990 -2.3097 10 7 5.1806 0.6663 -2.9053 11 6 5.5216 1.8180 -3.5167 12 8 4.6729 2.4799 -4.0845 13 6 6.9129 2.2725 -3.4980 14 1 7.7017 1.5859 -3.2285 15 6 7.2211 3.5979 -3.8295 16 7 8.4654 3.9542 -4.0086 17 14 5.8532 4.8564 -4.0154 18 1 5.2972 4.7835 -5.3905 19 1 4.7790 4.5690 -3.0313 20 1 6.3960 6.2170 -3.7725 21 6 3.7725 0.2530 -2.8153 22 1 -0.3634 0.5119 -0.8911 23 1 -0.3634 -1.0277 0.0022 24 1 -0.3633 0.5158 0.8889 25 1 2.0118 1.7905 1.0127 26 1 1.4074 2.0226 -0.6569 27 1 4.1511 1.1752 0.2842 28 1 3.6920 2.1008 -1.1766 29 1 1.4065 -0.2802 -2.1088 30 1 2.0152 -1.6851 -1.1796 31 1 4.3873 -1.9760 -1.3456 32 1 4.1690 -1.2484 0.2636 33 1 6.5497 -1.1791 -0.4197 34 1 5.8820 0.4660 -0.2846 35 1 6.2510 -1.1424 -2.8540 36 1 7.1773 0.2966 -2.3610 37 1 8.6788 4.8720 -4.2385 38 1 3.1318 1.0568 -3.1780 39 1 3.6152 -0.6421 -3.4171 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597710147.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:24 Heat of formation + Delta-G solvation = -42.041928 kcal Electronic energy + Delta-G solvation = -19901.080390 eV Core-core repulsion = 17035.809917 eV Total energy + Delta-G solvation = -2865.270473 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.10629 -37.80895 -35.77829 -32.85008 -32.45667 -31.16434 -29.61289 -27.32170 -26.13425 -24.54318 -23.79610 -21.75046 -21.08209 -19.61187 -18.02549 -16.67137 -16.02757 -15.68087 -15.46413 -14.88242 -14.32501 -14.09567 -13.88609 -13.57765 -13.26180 -13.00840 -12.59909 -12.40300 -12.18972 -12.08567 -11.72291 -11.62244 -11.42026 -11.21732 -10.88093 -10.73752 -10.61111 -10.49108 -10.30794 -10.07767 -9.94774 -9.39548 -9.01546 -8.50673 -7.90104 -7.49797 -6.62038 -4.81847 3.44271 3.47661 3.69622 4.04033 4.18304 4.25537 4.53355 4.77538 4.83287 4.99195 5.24637 5.33426 5.41321 5.41984 5.45304 5.55232 5.58299 5.71110 5.76528 5.76864 5.85740 5.91027 6.05528 6.11996 6.18265 6.22805 6.31794 6.39646 6.49843 6.53223 6.57422 6.77654 6.89982 7.00964 7.11353 7.65607 7.90304 8.33042 8.73547 9.15825 10.05270 10.39121 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.027683 B = 0.007323 C = 0.006402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.211329 B = 3822.478276 C = 4372.763158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.515 5.515 3 C 0.031 3.969 4 C -0.111 4.111 5 C -0.074 4.074 6 C 0.043 3.957 7 C -0.096 4.096 8 C -0.136 4.136 9 C 0.119 3.881 10 N -0.628 5.628 11 C 0.556 3.444 12 O -0.619 6.619 13 C -0.534 4.534 14 H 0.091 0.909 15 C 0.104 3.896 16 N -0.828 5.828 17 Si 0.964 3.036 18 H -0.278 1.278 19 H -0.268 1.268 20 H -0.321 1.321 21 C 0.133 3.867 22 H 0.027 0.973 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.077 0.923 26 H 0.042 0.958 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.045 0.955 30 H 0.080 0.920 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.044 0.956 36 H 0.098 0.902 37 H 0.282 0.718 38 H 0.082 0.918 39 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.753 -8.719 8.282 15.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.239 5.239 3 C -0.097 4.097 4 C -0.149 4.149 5 C -0.075 4.075 6 C -0.085 4.085 7 C -0.133 4.133 8 C -0.175 4.175 9 C -0.005 4.005 10 N -0.362 5.362 11 C 0.366 3.634 12 O -0.511 6.511 13 C -0.570 4.570 14 H 0.109 0.891 15 C -0.114 4.114 16 N -0.458 5.458 17 Si 0.797 3.203 18 H -0.204 1.204 19 H -0.194 1.194 20 H -0.252 1.252 21 C 0.008 3.992 22 H 0.045 0.955 23 H 0.085 0.915 24 H 0.084 0.916 25 H 0.095 0.905 26 H 0.060 0.940 27 H 0.091 0.909 28 H 0.095 0.905 29 H 0.063 0.937 30 H 0.098 0.902 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.062 0.938 36 H 0.116 0.884 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -9.845 -8.603 8.428 15.555 hybrid contribution -0.788 0.878 -0.769 1.408 sum -10.632 -7.726 7.659 15.211 Atomic orbital electron populations 1.22494 0.88586 1.01819 1.00650 1.65388 1.07608 1.15771 1.35132 1.23183 0.96098 0.89609 1.00767 1.22365 0.95312 0.97698 0.99510 1.21217 0.93978 0.95714 0.96621 1.23119 0.94731 0.99836 0.90816 1.21410 0.94346 0.97050 1.00512 1.21991 0.96154 1.01194 0.98128 1.21501 0.93720 0.93784 0.91508 1.47658 1.04475 1.23873 1.60160 1.18314 0.89699 0.78241 0.77167 1.90208 1.53735 1.56121 1.51041 1.20773 0.90682 0.97660 1.47853 0.89115 1.25723 0.96757 0.99624 0.89316 1.69561 1.19795 1.20097 1.36375 0.85284 0.79741 0.74622 0.80700 1.20380 1.19360 1.25211 1.21109 0.85547 0.99442 0.93086 0.95457 0.91503 0.91555 0.90464 0.93968 0.90937 0.90452 0.93659 0.90165 0.92468 0.91757 0.91737 0.91328 0.93775 0.88431 0.90846 0.89956 0.93720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.53 60.06 0.57 0.72 16 2 N -0.52 -6.72 5.66 -238.32 -1.35 -8.06 16 3 C 0.03 0.43 6.51 -2.10 -0.01 0.42 16 4 C -0.11 -1.78 5.56 -25.52 -0.14 -1.92 16 5 C -0.07 -1.11 0.68 -154.28 -0.11 -1.22 16 6 C 0.04 0.57 5.59 -2.37 -0.01 0.56 16 7 C -0.10 -1.31 4.43 -26.93 -0.12 -1.43 16 8 C -0.14 -2.03 5.87 -26.57 -0.16 -2.18 16 9 C 0.12 2.14 6.34 -3.71 -0.02 2.11 16 10 N -0.63 -13.42 2.76 -174.95 -0.48 -13.90 16 11 C 0.56 14.72 7.25 -12.99 -0.09 14.62 16 12 O -0.62 -17.90 12.07 5.19 0.06 -17.83 16 13 C -0.53 -14.92 9.31 -35.63 -0.33 -15.25 16 14 H 0.09 2.51 6.03 -52.49 -0.32 2.19 16 15 C 0.10 2.95 5.52 -17.37 -0.10 2.85 16 16 N -0.83 -23.48 13.92 55.55 0.77 -22.71 16 17 Si 0.96 25.49 25.82 -169.99 -4.39 21.11 16 18 H -0.28 -7.61 7.11 56.52 0.40 -7.21 16 19 H -0.27 -7.35 6.80 56.52 0.38 -6.96 16 20 H -0.32 -8.03 7.11 56.52 0.40 -7.63 16 21 C 0.13 2.43 4.69 -4.16 -0.02 2.41 16 22 H 0.03 0.29 7.97 -51.93 -0.41 -0.12 16 23 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 26 H 0.04 0.60 7.97 -51.93 -0.41 0.19 16 27 H 0.07 1.13 6.52 -51.93 -0.34 0.79 16 28 H 0.08 1.51 7.63 -51.93 -0.40 1.12 16 29 H 0.05 0.61 7.60 -51.93 -0.39 0.21 16 30 H 0.08 0.96 7.84 -51.93 -0.41 0.55 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.07 1.11 6.61 -51.93 -0.34 0.77 16 35 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.10 1.93 5.36 -51.93 -0.28 1.65 16 37 H 0.28 7.36 8.29 -40.82 -0.34 7.02 16 38 H 0.08 1.70 7.02 -51.93 -0.36 1.34 16 39 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 296.48 15.07 4.47 4.47 Total: -1.00 -30.93 296.48 -7.66 -38.59 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -6.20 Total: -3.34 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: -0.54 Total: 1.69 kcal Atomic # 7 Polarization: -43.62 SS G_CDS: -1.06 Total: -44.68 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: 0.06 Total: -17.83 kcal Atomic # 14 Polarization: 25.49 SS G_CDS: -4.39 Total: 21.11 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.93 -7.66 -38.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597710147.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.452 kcal (2) G-P(sol) polarization free energy of solvation -30.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds