Wall clock time and date at job start Sun Mar 29 2020 23:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.48604 * 110.99815 * 2 1 4 4 C 1.54495 * 104.60589 * 201.19263 * 3 2 1 5 5 C 1.53821 * 104.89043 * 23.80219 * 4 3 2 6 6 C 1.48671 * 110.99915 * 244.49644 * 2 1 3 7 7 C 1.52489 * 110.21065 * 240.89555 * 5 4 3 8 8 C 1.53129 * 109.60200 * 298.05764 * 7 5 4 9 9 C 1.53180 * 109.29919 * 299.49573 * 8 7 5 10 10 N 1.46934 * 108.89300 * 55.05789 * 9 8 7 11 11 C 1.34772 * 120.68198 * 125.98590 * 10 9 8 12 12 O 1.21694 * 120.00288 * 175.01514 * 11 10 9 13 13 C 1.46377 * 120.00136 * 355.02187 * 11 10 9 14 14 H 1.07997 * 120.00122 * 15.78239 * 13 11 10 15 15 C 1.40055 * 119.99939 * 195.79251 * 13 11 10 16 16 N 1.30666 * 120.00018 * 190.24030 * 15 13 11 17 17 Si 1.86797 * 119.99881 * 10.24296 * 15 13 11 18 18 H 1.48503 * 109.46906 * 275.36216 * 17 15 13 19 19 H 1.48498 * 109.47512 * 35.36410 * 17 15 13 20 20 H 1.48496 * 109.47027 * 155.36390 * 17 15 13 21 21 C 1.47034 * 118.63454 * 306.25424 * 10 9 8 22 22 H 1.08997 * 109.47309 * 60.12467 * 1 2 3 23 23 H 1.09004 * 109.47227 * 180.12206 * 1 2 3 24 24 H 1.09003 * 109.47123 * 300.12565 * 1 2 3 25 25 H 1.09004 * 110.40721 * 82.41516 * 3 2 1 26 26 H 1.08995 * 110.41098 * 319.97911 * 3 2 1 27 27 H 1.08995 * 110.35678 * 264.95034 * 4 3 2 28 28 H 1.09002 * 110.44284 * 142.70115 * 4 3 2 29 29 H 1.08993 * 110.43065 * 39.89200 * 6 2 1 30 30 H 1.09005 * 110.42318 * 277.40044 * 6 2 1 31 31 H 1.09000 * 109.44863 * 178.02118 * 7 5 4 32 32 H 1.08997 * 109.44770 * 58.09835 * 7 5 4 33 33 H 1.09007 * 109.49943 * 179.54579 * 8 7 5 34 34 H 1.09005 * 109.49944 * 59.44586 * 8 7 5 35 35 H 1.09001 * 109.56334 * 295.23460 * 9 8 7 36 36 H 1.08996 * 109.66648 * 174.93919 * 9 8 7 37 37 H 0.96996 * 120.00113 * 179.97438 * 16 15 13 38 38 H 1.09003 * 109.58424 * 172.32069 * 21 10 9 39 39 H 1.08997 * 109.58457 * 292.73633 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0015 1.3874 0.0000 4 6 3.4424 1.2516 -0.5405 5 6 3.4355 -0.0488 -1.3621 6 6 2.0018 -0.5976 -1.2527 7 6 4.4276 -1.0475 -0.7760 8 6 5.8430 -0.4673 -0.8464 9 6 6.2079 -0.1990 -2.3097 10 7 5.1806 0.6663 -2.9053 11 6 5.5216 1.8180 -3.5167 12 8 4.6729 2.4799 -4.0845 13 6 6.9129 2.2725 -3.4980 14 1 7.7017 1.5859 -3.2285 15 6 7.2211 3.5979 -3.8295 16 7 8.4654 3.9542 -4.0086 17 14 5.8532 4.8564 -4.0154 18 1 5.2972 4.7835 -5.3905 19 1 4.7790 4.5690 -3.0313 20 1 6.3960 6.2170 -3.7725 21 6 3.7725 0.2530 -2.8153 22 1 -0.3634 0.5119 -0.8911 23 1 -0.3634 -1.0277 0.0022 24 1 -0.3633 0.5158 0.8889 25 1 2.0118 1.7905 1.0127 26 1 1.4074 2.0226 -0.6569 27 1 4.1511 1.1752 0.2842 28 1 3.6920 2.1008 -1.1766 29 1 1.4065 -0.2802 -2.1088 30 1 2.0152 -1.6851 -1.1796 31 1 4.3873 -1.9760 -1.3456 32 1 4.1690 -1.2484 0.2636 33 1 6.5497 -1.1791 -0.4197 34 1 5.8820 0.4660 -0.2846 35 1 6.2510 -1.1424 -2.8540 36 1 7.1773 0.2966 -2.3610 37 1 8.6788 4.8720 -4.2385 38 1 3.1318 1.0568 -3.1780 39 1 3.6152 -0.6421 -3.4171 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597710147.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:24 Heat of formation + Delta-G solvation = -63.970337 kcal Electronic energy + Delta-G solvation = -19902.031277 eV Core-core repulsion = 17035.809917 eV Total energy + Delta-G solvation = -2866.221361 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.45192 -39.51170 -37.31590 -35.01929 -33.88887 -32.53954 -30.82752 -29.11814 -27.43647 -26.04603 -25.08279 -23.06670 -22.26550 -21.36210 -19.42281 -18.58166 -17.99649 -16.89741 -16.76053 -16.67553 -15.89491 -15.27265 -15.20988 -15.14885 -14.65653 -14.41511 -14.17305 -14.00917 -13.85786 -13.61099 -13.25766 -13.12566 -12.81888 -12.58536 -12.37235 -12.21620 -12.06243 -11.92236 -11.85484 -11.46342 -11.25385 -11.24089 -11.11148 -10.00591 -9.53492 -9.23825 -8.80958 -6.99843 1.28273 1.31771 1.53992 2.06295 2.29922 2.66218 3.06239 3.29301 3.59692 3.67790 3.79152 4.17019 4.21898 4.23434 4.30206 4.33688 4.52172 4.55968 4.62363 4.65152 4.71501 4.74091 4.86483 4.92216 4.97485 5.00273 5.02747 5.06966 5.14447 5.21851 5.29463 5.40184 5.53920 5.69180 5.79640 5.99233 6.06267 6.23967 6.62626 7.15436 7.98594 8.24966 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.027683 B = 0.007323 C = 0.006402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.211329 B = 3822.478276 C = 4372.763158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.515 5.515 3 C 0.036 3.964 4 C -0.111 4.111 5 C -0.070 4.070 6 C 0.049 3.951 7 C -0.088 4.088 8 C -0.129 4.129 9 C 0.113 3.887 10 N -0.626 5.626 11 C 0.552 3.448 12 O -0.650 6.650 13 C -0.552 4.552 14 H 0.087 0.913 15 C 0.073 3.927 16 N -0.848 5.848 17 Si 1.005 2.995 18 H -0.294 1.294 19 H -0.290 1.290 20 H -0.296 1.296 21 C 0.132 3.868 22 H 0.023 0.977 23 H 0.084 0.916 24 H 0.077 0.923 25 H 0.090 0.910 26 H 0.032 0.968 27 H 0.076 0.924 28 H 0.031 0.969 29 H 0.040 0.960 30 H 0.104 0.896 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.050 0.950 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.291 0.709 38 H 0.050 0.950 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.796 -10.783 9.751 18.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.239 5.239 3 C -0.092 4.092 4 C -0.149 4.149 5 C -0.071 4.071 6 C -0.079 4.079 7 C -0.125 4.125 8 C -0.167 4.167 9 C -0.010 4.010 10 N -0.358 5.358 11 C 0.360 3.640 12 O -0.545 6.545 13 C -0.588 4.588 14 H 0.105 0.895 15 C -0.142 4.142 16 N -0.479 5.479 17 Si 0.838 3.162 18 H -0.222 1.222 19 H -0.217 1.217 20 H -0.225 1.225 21 C 0.009 3.991 22 H 0.042 0.958 23 H 0.103 0.897 24 H 0.095 0.905 25 H 0.109 0.891 26 H 0.050 0.950 27 H 0.094 0.906 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.122 0.878 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.114 0.886 34 H 0.069 0.931 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.102 0.898 38 H 0.069 0.931 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.874 -10.692 9.924 18.195 hybrid contribution -0.483 1.451 -1.228 1.961 sum -11.357 -9.242 8.696 17.029 Atomic orbital electron populations 1.22582 0.86900 1.03126 1.01038 1.65428 1.09183 1.14560 1.34739 1.23116 0.94480 0.90496 1.01094 1.22285 0.96977 0.96640 0.99010 1.21188 0.96155 0.95848 0.93943 1.23104 0.92914 1.01011 0.90917 1.21389 0.92498 0.96944 1.01683 1.21935 0.98051 1.01366 0.95316 1.21710 0.91757 0.93572 0.93963 1.47623 1.06707 1.22705 1.58780 1.18253 0.88928 0.79605 0.77244 1.90176 1.54278 1.57656 1.52398 1.21001 0.91639 0.97856 1.48304 0.89524 1.26158 0.97755 1.00710 0.89603 1.69556 1.20116 1.21075 1.37156 0.84714 0.77783 0.74878 0.78816 1.22153 1.21697 1.22501 1.21261 0.83037 0.98917 0.95933 0.95822 0.89730 0.90470 0.89138 0.94969 0.90580 0.95045 0.94146 0.87806 0.90401 0.90079 0.88573 0.93131 0.91376 0.90748 0.89837 0.93096 0.91638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 9.53 127.69 1.22 1.44 16 2 N -0.52 -11.96 5.66 -907.92 -5.14 -17.10 16 3 C 0.04 0.96 6.51 86.48 0.56 1.53 16 4 C -0.11 -3.53 5.56 31.38 0.17 -3.36 16 5 C -0.07 -1.98 0.68 -52.03 -0.04 -2.02 16 6 C 0.05 1.15 5.59 86.27 0.48 1.63 16 7 C -0.09 -2.08 4.43 30.47 0.13 -1.95 16 8 C -0.13 -3.50 5.87 30.70 0.18 -3.32 16 9 C 0.11 3.92 6.34 86.36 0.55 4.46 16 10 N -0.63 -26.83 2.76 -825.63 -2.28 -29.11 16 11 C 0.55 29.99 7.25 86.36 0.63 30.61 16 12 O -0.65 -38.85 12.07 -4.33 -0.05 -38.91 16 13 C -0.55 -31.61 9.31 24.83 0.23 -31.38 16 14 H 0.09 4.93 6.03 -2.91 -0.02 4.91 16 15 C 0.07 4.25 5.52 85.31 0.47 4.72 16 16 N -0.85 -48.45 13.92 21.84 0.30 -48.15 16 17 Si 1.01 53.63 25.82 68.60 1.77 55.40 16 18 H -0.29 -16.36 7.11 99.48 0.71 -15.65 16 19 H -0.29 -16.38 6.80 99.48 0.68 -15.70 16 20 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 21 C 0.13 4.77 4.69 86.01 0.40 5.17 16 22 H 0.02 0.45 7.97 -2.39 -0.02 0.43 16 23 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 24 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.09 2.16 8.14 -2.38 -0.02 2.14 16 26 H 0.03 0.91 7.97 -2.39 -0.02 0.89 16 27 H 0.08 2.32 6.52 -2.39 -0.02 2.31 16 28 H 0.03 1.27 7.63 -2.39 -0.02 1.26 16 29 H 0.04 1.00 7.60 -2.39 -0.02 0.98 16 30 H 0.10 2.00 7.84 -2.38 -0.02 1.98 16 31 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.10 2.06 8.14 -2.38 -0.02 2.05 16 34 H 0.05 1.57 6.61 -2.38 -0.02 1.55 16 35 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.07 2.95 5.36 -2.39 -0.01 2.93 16 37 H 0.29 15.21 8.29 -92.71 -0.77 14.44 16 38 H 0.05 2.16 7.02 -2.39 -0.02 2.14 16 39 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -67.93 296.48 0.59 -67.34 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: 0.99 Total: 2.99 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: 4.99 Total: 7.53 kcal Atomic # 7 Polarization: -87.23 SS G_CDS: -7.12 Total: -94.35 kcal Atomic # 8 Polarization: -38.85 SS G_CDS: -0.05 Total: -38.91 kcal Atomic # 14 Polarization: 53.63 SS G_CDS: 1.77 Total: 55.40 kcal Total: -67.93 0.59 -67.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597710147.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.367 kcal (2) G-P(sol) polarization free energy of solvation -67.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds