Wall clock time and date at job start Sun Mar 29 2020 23:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46900 * 110.99639 * 2 1 4 4 C 1.46901 * 110.99727 * 123.95280 * 2 1 3 5 5 H 1.09005 * 115.49620 * 325.38190 * 4 2 1 6 6 C 1.52997 * 117.44043 * 180.02562 * 4 2 1 7 7 H 1.09002 * 119.54133 * 4.11910 * 6 4 2 8 8 C 1.54388 * 118.12284 * 159.21398 * 6 4 2 9 9 N 1.48147 * 104.61651 * 89.20490 * 8 6 4 10 10 C 1.34777 * 127.83569 * 140.41450 * 9 8 6 11 11 O 1.21281 * 120.00091 * 0.02562 * 10 9 8 12 12 C 1.50694 * 120.00249 * 179.97438 * 10 9 8 13 13 C 1.52997 * 109.47625 * 179.97438 * 12 10 9 14 14 C 1.50703 * 109.47336 * 180.02562 * 13 12 10 15 15 H 1.07993 * 119.99980 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99643 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00336 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99666 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47230 * 89.99516 * 18 16 14 20 20 H 1.48499 * 109.47194 * 209.99378 * 18 16 14 21 21 H 1.48499 * 109.47189 * 329.99900 * 18 16 14 22 22 C 1.48137 * 104.32634 * 320.41583 * 9 8 6 23 23 C 1.54288 * 61.50003 * 251.66917 * 6 4 2 24 24 H 1.09003 * 121.81721 * 109.76430 * 23 6 4 25 25 H 1.09001 * 109.47513 * 296.04927 * 1 2 3 26 26 H 1.09004 * 109.46810 * 56.04390 * 1 2 3 27 27 H 1.09006 * 109.47046 * 176.04465 * 1 2 3 28 28 H 1.09001 * 109.46891 * 183.94954 * 3 2 1 29 29 H 1.08992 * 109.47474 * 303.95458 * 3 2 1 30 30 H 1.09003 * 109.46908 * 63.95627 * 3 2 1 31 31 H 1.08995 * 110.40668 * 207.99527 * 8 6 4 32 32 H 1.09000 * 110.40522 * 330.42328 * 8 6 4 33 33 H 1.09001 * 109.47726 * 300.00506 * 12 10 9 34 34 H 1.09008 * 109.47163 * 60.00159 * 12 10 9 35 35 H 1.09003 * 109.47244 * 300.00493 * 13 12 10 36 36 H 1.09002 * 109.47060 * 60.00134 * 13 12 10 37 37 H 0.96997 * 119.99842 * 180.02562 * 17 16 14 38 38 H 1.09003 * 110.41101 * 158.36867 * 22 9 8 39 39 H 1.09008 * 110.40831 * 280.68468 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7660 1.1376 5 1 1.4076 -0.7090 2.0538 6 6 3.5158 -0.8614 1.2804 7 1 4.1559 -0.3133 0.5891 8 6 4.0958 -1.2127 2.6673 9 7 4.1614 -2.6926 2.6812 10 6 5.1346 -3.4723 3.1925 11 8 6.1025 -2.9665 3.7200 12 6 5.0196 -4.9726 3.1099 13 6 6.2473 -5.6148 3.7589 14 6 6.1325 -7.1151 3.6756 15 1 5.2704 -7.5655 3.2064 16 6 7.1282 -7.9127 4.1986 17 7 8.1783 -7.3642 4.7696 18 14 6.9863 -9.7724 4.0948 19 1 7.6111 -10.2469 2.8339 20 1 7.6819 -10.3874 5.2538 21 1 5.5533 -10.1614 4.1140 22 6 2.9146 -3.1211 2.0056 23 6 2.7369 -2.1197 0.8441 24 1 2.8081 -2.5174 -0.1683 25 1 -0.3634 0.4513 0.9233 26 1 -0.3633 0.5740 -0.8525 27 1 -0.3633 -1.0253 -0.0709 28 1 3.0828 1.3433 -0.0708 29 1 1.5898 1.9163 -0.8523 30 1 1.7043 1.8723 0.9233 31 1 5.0927 -0.7869 2.7813 32 1 3.4359 -0.8540 3.4572 33 1 4.1200 -5.2975 3.6327 34 1 4.9616 -5.2755 2.0644 35 1 7.1466 -5.2899 3.2357 36 1 6.3058 -5.3120 4.8044 37 1 8.8789 -7.9253 5.1372 38 1 3.0202 -4.1352 1.6203 39 1 2.0704 -3.0625 2.6928 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599991236.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:26:48 Heat of formation + Delta-G solvation = 3.902685 kcal Electronic energy + Delta-G solvation = -18276.865876 eV Core-core repulsion = 15413.587711 eV Total energy + Delta-G solvation = -2863.278165 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.28801 -38.33517 -36.36411 -33.45487 -32.65491 -30.92441 -28.64192 -27.81746 -26.65559 -25.15743 -23.45508 -21.34677 -20.72941 -20.06858 -18.67120 -17.13524 -16.43103 -15.81812 -15.65253 -14.99331 -14.84717 -14.75888 -14.38010 -13.70477 -13.40073 -13.12289 -12.92864 -12.65576 -12.22497 -12.09155 -12.02355 -11.97144 -11.85186 -11.46430 -11.12295 -10.91762 -10.59277 -10.26076 -10.18752 -9.94030 -9.63524 -9.16167 -8.99864 -8.67571 -8.51060 -8.30208 -5.94594 -3.99020 3.05214 3.21021 3.24218 3.34617 3.40649 3.43378 3.51923 4.45397 4.48878 4.60503 4.65847 4.78410 4.96754 5.01068 5.03792 5.18760 5.25782 5.35743 5.40298 5.45422 5.51726 5.55035 5.56794 5.66156 5.79686 5.94289 6.02498 6.21239 6.24690 6.44861 6.60989 6.72273 6.91132 7.75898 7.87541 7.88733 8.08647 8.39685 8.73900 9.09319 9.64395 11.16432 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.048519 B = 0.003632 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.954461 B = 7708.312330 C = 8137.808025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.521 5.521 3 C 0.026 3.974 4 C 0.043 3.957 5 H 0.093 0.907 6 C -0.163 4.163 7 H 0.120 0.880 8 C 0.129 3.871 9 N -0.634 5.634 10 C 0.533 3.467 11 O -0.532 6.532 12 C -0.124 4.124 13 C 0.036 3.964 14 C -0.526 4.526 15 H 0.056 0.944 16 C 0.058 3.942 17 N -0.890 5.890 18 Si 0.893 3.107 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.274 1.274 22 C 0.129 3.871 23 C -0.154 4.154 24 H 0.126 0.874 25 H 0.027 0.973 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.028 0.972 31 H 0.086 0.914 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.024 0.976 36 H 0.024 0.976 37 H 0.261 0.739 38 H 0.091 0.909 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.517 15.423 -9.437 24.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.244 5.244 3 C -0.122 4.122 4 C -0.066 4.066 5 H 0.110 0.890 6 C -0.183 4.183 7 H 0.138 0.862 8 C 0.006 3.994 9 N -0.371 5.371 10 C 0.324 3.676 11 O -0.407 6.407 12 C -0.164 4.164 13 C -0.001 4.001 14 C -0.565 4.565 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.529 5.529 18 Si 0.721 3.279 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 C 0.006 3.994 23 C -0.174 4.174 24 H 0.144 0.856 25 H 0.045 0.955 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.046 0.954 31 H 0.105 0.895 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.042 0.958 36 H 0.042 0.958 37 H 0.071 0.929 38 H 0.109 0.891 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -15.533 15.336 -9.413 23.771 hybrid contribution -0.349 -0.533 0.539 0.835 sum -15.882 14.803 -8.874 23.454 Atomic orbital electron populations 1.22386 0.86456 1.02640 1.00509 1.61513 1.08205 1.13686 1.41038 1.22374 1.01232 0.88092 1.00494 1.23173 0.93239 0.97153 0.93028 0.88969 1.23825 0.92734 1.02683 0.99043 0.86191 1.21659 1.01689 0.82107 0.93929 1.49522 1.21529 1.06009 1.60001 1.21327 0.80037 0.90188 0.76005 1.90679 1.30676 1.75942 1.43419 1.21859 1.04056 0.87579 1.02874 1.18919 0.90692 0.94076 0.96421 1.21212 1.05704 0.91361 1.38200 0.92580 1.25029 0.95366 0.98723 0.95291 1.69999 1.09197 1.35199 1.38457 0.86583 0.78115 0.85631 0.77571 1.20665 1.21232 1.19869 1.21785 0.86905 0.98296 0.92464 1.24491 1.04489 0.88341 1.00124 0.85626 0.95464 0.91196 0.90959 0.91045 0.91276 0.95366 0.89525 0.91559 0.90253 0.90218 0.95808 0.95800 0.92948 0.89065 0.91158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.57 60.07 0.57 0.77 16 2 N -0.52 -4.49 5.20 -240.47 -1.25 -5.74 16 3 C 0.03 0.19 9.39 60.06 0.56 0.75 16 4 C 0.04 0.40 5.04 -65.48 -0.33 0.07 16 5 H 0.09 0.82 8.08 -51.93 -0.42 0.40 16 6 C -0.16 -1.73 6.22 -89.22 -0.56 -2.28 16 7 H 0.12 1.25 7.26 -51.93 -0.38 0.87 16 8 C 0.13 1.68 6.85 -2.41 -0.02 1.66 16 9 N -0.63 -9.86 3.32 -169.32 -0.56 -10.42 16 10 C 0.53 10.89 7.91 -10.99 -0.09 10.80 16 11 O -0.53 -13.13 16.25 5.56 0.09 -13.04 16 12 C -0.12 -2.61 4.62 -27.89 -0.13 -2.73 16 13 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 14 C -0.53 -15.10 9.11 -34.44 -0.31 -15.42 16 15 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -27.71 13.29 55.43 0.74 -26.97 16 18 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 22 C 0.13 1.50 6.75 -2.42 -0.02 1.49 16 23 C -0.15 -1.60 7.27 -86.99 -0.63 -2.23 16 24 H 0.13 1.30 8.14 -51.93 -0.42 0.87 16 25 H 0.03 0.17 8.14 -51.93 -0.42 -0.25 16 26 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.53 6.89 -51.93 -0.36 0.17 16 29 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 30 H 0.03 0.20 8.14 -51.93 -0.42 -0.23 16 31 H 0.09 1.24 7.88 -51.93 -0.41 0.83 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 34 H 0.08 1.54 7.95 -51.92 -0.41 1.13 16 35 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 36 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 37 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 38 H 0.09 1.03 7.30 -51.93 -0.38 0.65 16 39 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 LS Contribution 322.20 15.07 4.86 4.86 Total: -1.00 -34.07 322.20 -8.85 -42.92 By element: Atomic # 1 Polarization: 2.79 SS G_CDS: -6.54 Total: -3.75 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: -1.16 Total: -4.65 kcal Atomic # 7 Polarization: -42.06 SS G_CDS: -1.08 Total: -43.13 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: 0.09 Total: -13.04 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -34.07 -8.85 -42.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599991236.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.827 kcal (2) G-P(sol) polarization free energy of solvation -34.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds