Wall clock time and date at job start Sun Mar 29 2020 23:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46900 * 110.99639 * 2 1 4 4 C 1.46901 * 110.99727 * 123.95280 * 2 1 3 5 5 H 1.09005 * 115.49620 * 325.38190 * 4 2 1 6 6 C 1.52997 * 117.44043 * 180.02562 * 4 2 1 7 7 H 1.09002 * 119.54133 * 4.11910 * 6 4 2 8 8 C 1.54388 * 118.12284 * 159.21398 * 6 4 2 9 9 N 1.48147 * 104.61651 * 89.20490 * 8 6 4 10 10 C 1.34777 * 127.83569 * 140.41450 * 9 8 6 11 11 O 1.21281 * 120.00091 * 0.02562 * 10 9 8 12 12 C 1.50694 * 120.00249 * 179.97438 * 10 9 8 13 13 C 1.52997 * 109.47625 * 179.97438 * 12 10 9 14 14 C 1.50703 * 109.47336 * 180.02562 * 13 12 10 15 15 H 1.07993 * 119.99980 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99643 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00336 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99666 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47230 * 89.99516 * 18 16 14 20 20 H 1.48499 * 109.47194 * 209.99378 * 18 16 14 21 21 H 1.48499 * 109.47189 * 329.99900 * 18 16 14 22 22 C 1.48137 * 104.32634 * 320.41583 * 9 8 6 23 23 C 1.54288 * 61.50003 * 251.66917 * 6 4 2 24 24 H 1.09003 * 121.81721 * 109.76430 * 23 6 4 25 25 H 1.09001 * 109.47513 * 296.04927 * 1 2 3 26 26 H 1.09004 * 109.46810 * 56.04390 * 1 2 3 27 27 H 1.09006 * 109.47046 * 176.04465 * 1 2 3 28 28 H 1.09001 * 109.46891 * 183.94954 * 3 2 1 29 29 H 1.08992 * 109.47474 * 303.95458 * 3 2 1 30 30 H 1.09003 * 109.46908 * 63.95627 * 3 2 1 31 31 H 1.08995 * 110.40668 * 207.99527 * 8 6 4 32 32 H 1.09000 * 110.40522 * 330.42328 * 8 6 4 33 33 H 1.09001 * 109.47726 * 300.00506 * 12 10 9 34 34 H 1.09008 * 109.47163 * 60.00159 * 12 10 9 35 35 H 1.09003 * 109.47244 * 300.00493 * 13 12 10 36 36 H 1.09002 * 109.47060 * 60.00134 * 13 12 10 37 37 H 0.96997 * 119.99842 * 180.02562 * 17 16 14 38 38 H 1.09003 * 110.41101 * 158.36867 * 22 9 8 39 39 H 1.09008 * 110.40831 * 280.68468 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7660 1.1376 5 1 1.4076 -0.7090 2.0538 6 6 3.5158 -0.8614 1.2804 7 1 4.1559 -0.3133 0.5891 8 6 4.0958 -1.2127 2.6673 9 7 4.1614 -2.6926 2.6812 10 6 5.1346 -3.4723 3.1925 11 8 6.1025 -2.9665 3.7200 12 6 5.0196 -4.9726 3.1099 13 6 6.2473 -5.6148 3.7589 14 6 6.1325 -7.1151 3.6756 15 1 5.2704 -7.5655 3.2064 16 6 7.1282 -7.9127 4.1986 17 7 8.1783 -7.3642 4.7696 18 14 6.9863 -9.7724 4.0948 19 1 7.6111 -10.2469 2.8339 20 1 7.6819 -10.3874 5.2538 21 1 5.5533 -10.1614 4.1140 22 6 2.9146 -3.1211 2.0056 23 6 2.7369 -2.1197 0.8441 24 1 2.8081 -2.5174 -0.1683 25 1 -0.3634 0.4513 0.9233 26 1 -0.3633 0.5740 -0.8525 27 1 -0.3633 -1.0253 -0.0709 28 1 3.0828 1.3433 -0.0708 29 1 1.5898 1.9163 -0.8523 30 1 1.7043 1.8723 0.9233 31 1 5.0927 -0.7869 2.7813 32 1 3.4359 -0.8540 3.4572 33 1 4.1200 -5.2975 3.6327 34 1 4.9616 -5.2755 2.0644 35 1 7.1466 -5.2899 3.2357 36 1 6.3058 -5.3120 4.8044 37 1 8.8789 -7.9253 5.1372 38 1 3.0202 -4.1352 1.6203 39 1 2.0704 -3.0625 2.6928 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599991236.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:26:48 Heat of formation + Delta-G solvation = -19.790199 kcal Electronic energy + Delta-G solvation = -18277.893277 eV Core-core repulsion = 15413.587711 eV Total energy + Delta-G solvation = -2864.305566 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.40893 -39.67296 -37.25413 -35.58892 -33.85651 -32.85314 -29.68310 -28.46277 -28.11030 -26.65669 -24.46813 -23.15339 -21.50423 -21.01499 -20.12108 -18.84510 -17.82882 -17.08252 -16.86024 -16.50544 -16.23789 -15.90646 -15.53320 -14.80104 -14.55825 -14.21780 -14.11773 -14.04130 -13.60388 -13.43149 -13.17877 -12.98930 -12.81256 -12.64097 -12.51689 -12.47525 -12.29639 -11.94950 -11.64854 -11.34359 -11.19277 -10.97225 -10.64460 -10.57178 -9.79636 -9.30609 -8.18125 -6.32572 1.42524 1.45647 1.56603 1.61847 1.92508 2.34827 2.43667 2.74276 3.14818 3.54252 3.71724 3.86072 3.98890 4.07146 4.14394 4.30538 4.44339 4.47315 4.50059 4.51617 4.64564 4.68396 4.70059 4.77901 4.83684 4.98351 5.01195 5.07695 5.09556 5.17726 5.28704 5.49174 5.60582 5.83889 6.02179 6.09334 6.16419 6.49259 6.85667 7.19059 7.37783 8.94786 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.048519 B = 0.003632 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.954461 B = 7708.312330 C = 8137.808025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.535 5.535 3 C 0.025 3.975 4 C 0.066 3.934 5 H 0.103 0.897 6 C -0.166 4.166 7 H 0.121 0.879 8 C 0.126 3.874 9 N -0.628 5.628 10 C 0.530 3.470 11 O -0.591 6.591 12 C -0.111 4.111 13 C 0.043 3.957 14 C -0.543 4.543 15 H 0.077 0.923 16 C -0.008 4.008 17 N -0.939 5.939 18 Si 0.976 3.024 19 H -0.271 1.271 20 H -0.286 1.286 21 H -0.254 1.254 22 C 0.123 3.877 23 C -0.153 4.153 24 H 0.129 0.871 25 H 0.033 0.967 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.031 0.969 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.104 0.896 34 H 0.102 0.898 35 H -0.019 1.019 36 H -0.018 1.018 37 H 0.263 0.737 38 H 0.098 0.902 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.520 14.876 -10.843 26.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.259 5.259 3 C -0.122 4.122 4 C -0.043 4.043 5 H 0.121 0.879 6 C -0.185 4.185 7 H 0.139 0.861 8 C 0.003 3.997 9 N -0.363 5.363 10 C 0.322 3.678 11 O -0.471 6.471 12 C -0.150 4.150 13 C 0.005 3.995 14 C -0.580 4.580 15 H 0.095 0.905 16 C -0.205 4.205 17 N -0.579 5.579 18 Si 0.800 3.200 19 H -0.197 1.197 20 H -0.212 1.212 21 H -0.177 1.177 22 C 0.002 3.998 23 C -0.174 4.174 24 H 0.147 0.853 25 H 0.051 0.949 26 H 0.099 0.901 27 H 0.092 0.908 28 H 0.084 0.916 29 H 0.099 0.901 30 H 0.050 0.950 31 H 0.084 0.916 32 H 0.103 0.897 33 H 0.122 0.878 34 H 0.120 0.880 35 H -0.001 1.001 36 H 0.001 0.999 37 H 0.072 0.928 38 H 0.117 0.883 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -18.619 14.818 -10.865 26.159 hybrid contribution 0.531 -0.247 0.937 1.105 sum -18.088 14.570 -9.929 25.260 Atomic orbital electron populations 1.22443 0.85199 1.03072 1.01323 1.61522 1.09402 1.14315 1.40631 1.22404 1.00988 0.87572 1.01260 1.23144 0.91843 0.95744 0.93596 0.87938 1.23665 0.93997 1.03453 0.97404 0.86126 1.21803 1.01309 0.80307 0.96242 1.49431 1.21399 1.07182 1.58261 1.21074 0.80305 0.90313 0.76119 1.90653 1.33299 1.76721 1.46443 1.21596 1.01641 0.88090 1.03692 1.18698 0.92112 0.94704 0.93990 1.21696 1.06396 0.91923 1.38027 0.90475 1.26168 0.94768 1.04992 0.94602 1.70183 1.10368 1.37614 1.39690 0.85289 0.79113 0.77985 0.77663 1.19689 1.21180 1.17749 1.22081 0.85474 0.99067 0.93201 1.24461 1.05063 0.88136 0.99691 0.85293 0.94873 0.90137 0.90794 0.91567 0.90068 0.94991 0.91627 0.89706 0.87813 0.87986 1.00074 0.99932 0.92829 0.88337 0.88801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.57 127.69 1.22 1.51 16 2 N -0.54 -7.69 5.20 -914.70 -4.76 -12.45 16 3 C 0.03 0.30 9.39 127.69 1.20 1.50 16 4 C 0.07 1.03 5.04 46.36 0.23 1.26 16 5 H 0.10 1.43 8.08 -2.38 -0.02 1.41 16 6 C -0.17 -3.21 6.22 -9.89 -0.06 -3.28 16 7 H 0.12 2.36 7.26 -2.39 -0.02 2.35 16 8 C 0.13 3.17 6.85 86.53 0.59 3.76 16 9 N -0.63 -19.01 3.32 -807.98 -2.68 -21.69 16 10 C 0.53 22.10 7.91 87.66 0.69 22.79 16 11 O -0.59 -30.83 16.25 -3.03 -0.05 -30.88 16 12 C -0.11 -4.65 4.62 29.84 0.14 -4.51 16 13 C 0.04 2.44 4.26 29.85 0.13 2.56 16 14 C -0.54 -31.32 9.11 25.60 0.23 -31.09 16 15 H 0.08 4.03 7.74 -2.91 -0.02 4.01 16 16 C -0.01 -0.47 5.46 84.66 0.46 -0.01 16 17 N -0.94 -60.35 13.29 21.45 0.28 -60.07 16 18 Si 0.98 44.62 29.54 68.60 2.03 46.65 16 19 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 20 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 21 H -0.25 -10.71 7.11 99.48 0.71 -10.00 16 22 C 0.12 2.55 6.75 86.53 0.58 3.13 16 23 C -0.15 -2.78 7.27 -8.44 -0.06 -2.84 16 24 H 0.13 2.32 8.14 -2.39 -0.02 2.30 16 25 H 0.03 0.32 8.14 -2.39 -0.02 0.30 16 26 H 0.08 0.68 8.12 -2.39 -0.02 0.66 16 27 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 28 H 0.07 0.87 6.89 -2.39 -0.02 0.85 16 29 H 0.08 0.79 8.12 -2.39 -0.02 0.77 16 30 H 0.03 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.07 1.94 7.88 -2.39 -0.02 1.92 16 32 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.10 3.83 8.14 -2.39 -0.02 3.81 16 34 H 0.10 3.80 7.95 -2.38 -0.02 3.78 16 35 H -0.02 -1.24 8.10 -2.39 -0.02 -1.26 16 36 H -0.02 -1.15 8.10 -2.39 -0.02 -1.17 16 37 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 38 H 0.10 1.93 7.30 -2.39 -0.02 1.91 16 39 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 Total: -1.00 -77.20 322.20 1.19 -76.01 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: 1.01 Total: 7.63 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: 5.36 Total: -5.20 kcal Atomic # 7 Polarization: -87.05 SS G_CDS: -7.15 Total: -94.21 kcal Atomic # 8 Polarization: -30.83 SS G_CDS: -0.05 Total: -30.88 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -77.20 1.19 -76.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599991236.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.219 kcal (2) G-P(sol) polarization free energy of solvation -77.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds