Wall clock time and date at job start Sun Mar 29 2020 23:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46900 * 109.47199 * 2 1 4 4 C 1.46901 * 111.00416 * 305.52642 * 3 2 1 5 5 C 1.53001 * 109.46833 * 293.95485 * 4 3 2 6 6 C 1.46901 * 110.99903 * 69.48227 * 3 2 1 7 7 C 1.50693 * 109.47131 * 75.96605 * 6 3 2 8 8 C 1.35349 * 126.75237 * 94.87091 * 7 6 3 9 9 N 1.35311 * 106.17738 * 179.84962 * 8 7 6 10 10 C 1.46504 * 125.87243 * 180.11754 * 9 8 7 11 11 C 1.52992 * 109.47402 * 125.32417 * 10 9 8 12 12 C 1.50698 * 109.47291 * 180.02562 * 11 10 9 13 13 H 1.08003 * 120.00055 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00395 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99811 * 359.97438 * 14 12 11 16 16 Si 1.86792 * 120.00288 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47149 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47552 * 119.99613 * 16 14 12 19 19 H 1.48496 * 109.47444 * 239.99912 * 16 14 12 20 20 N 1.28717 * 108.26397 * 0.41464 * 9 8 7 21 21 N 1.28635 * 110.17727 * 359.73356 * 20 9 8 22 22 H 1.09005 * 109.46730 * 304.68147 * 1 2 3 23 23 H 1.09004 * 109.47400 * 64.67879 * 1 2 3 24 24 H 1.08993 * 109.47294 * 184.68203 * 1 2 3 25 25 H 1.09001 * 109.47401 * 240.00420 * 2 1 3 26 26 H 1.08998 * 109.47414 * 119.99898 * 2 1 3 27 27 H 1.08994 * 109.46827 * 53.95102 * 4 3 2 28 28 H 1.08998 * 109.47569 * 173.95334 * 4 3 2 29 29 H 1.09002 * 109.46921 * 179.97438 * 5 4 3 30 30 H 1.09003 * 109.47369 * 299.99425 * 5 4 3 31 31 H 1.08998 * 109.47448 * 60.00073 * 5 4 3 32 32 H 1.08998 * 109.47203 * 195.96803 * 6 3 2 33 33 H 1.08998 * 109.47106 * 315.96068 * 6 3 2 34 34 H 1.08002 * 126.91505 * 359.97438 * 8 7 6 35 35 H 1.09005 * 109.46999 * 245.32731 * 10 9 8 36 36 H 1.08999 * 109.46931 * 5.32182 * 10 9 8 37 37 H 1.09005 * 109.47300 * 300.00130 * 11 10 9 38 38 H 1.08999 * 109.47270 * 59.99971 * 11 10 9 39 39 H 0.97000 * 119.99731 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.4439 2.1471 -1.1161 5 6 1.9582 1.5791 -2.4404 6 6 1.7419 2.0415 1.2844 7 6 2.7160 1.5469 2.3224 8 6 3.8818 2.1324 2.6832 9 7 4.4174 1.3451 3.6445 10 6 5.6843 1.5819 4.3410 11 6 5.4427 1.5870 5.8517 12 6 6.7459 1.8313 6.5680 13 1 7.6556 1.9687 6.0023 14 6 6.7771 1.8783 7.9456 15 7 5.6694 1.7105 8.6346 16 14 8.3924 2.1804 8.8336 17 1 9.4832 2.3354 7.8378 18 1 8.2859 3.4174 9.6482 19 1 8.6928 1.0280 9.7206 20 7 3.6255 0.3488 3.8376 21 7 2.6014 0.4397 3.0645 22 1 -0.3633 0.5848 0.8451 23 1 -0.3634 0.4395 -0.9289 24 1 -0.3633 -1.0242 0.0839 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 0.3570 2.0706 -1.0857 28 1 1.7370 3.1934 -1.0312 29 1 1.5306 2.1443 -3.2686 30 1 3.0451 1.6555 -2.4709 31 1 1.6650 0.5328 -2.5254 32 1 1.8481 3.1204 1.1715 33 1 0.7251 1.8076 1.5997 34 1 4.2994 3.0455 2.2854 35 1 6.3910 0.7912 4.0887 36 1 6.0925 2.5452 4.0350 37 1 4.7361 2.3777 6.1040 38 1 5.0345 0.6238 6.1576 39 1 5.6914 1.7432 9.6038 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600968696.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:55:21 Heat of formation + Delta-G solvation = 90.077057 kcal Electronic energy + Delta-G solvation = -18294.901826 eV Core-core repulsion = 15467.653212 eV Total energy + Delta-G solvation = -2827.248613 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.68913 -38.43783 -35.01328 -32.91993 -31.99872 -31.19318 -29.94401 -29.04833 -25.64729 -25.39258 -23.96944 -22.38681 -21.35221 -20.32240 -19.57485 -17.04826 -16.26649 -16.05077 -15.93892 -15.43392 -14.67621 -14.53877 -14.32357 -13.87299 -13.39791 -13.05955 -12.70075 -12.47311 -12.28731 -12.17623 -11.93470 -11.64402 -11.49186 -11.22876 -11.11770 -10.94954 -10.80372 -10.64647 -10.51547 -10.26679 -9.99144 -9.40750 -9.23966 -8.75677 -8.52189 -8.29582 -6.16162 -4.22724 2.19855 2.89728 3.06348 3.23066 3.31259 3.34099 4.03723 4.33551 4.75333 4.81742 4.91093 5.07131 5.17576 5.20284 5.23259 5.30448 5.34333 5.40327 5.45235 5.50261 5.58593 5.80764 5.86464 5.89068 5.91559 6.00091 6.05459 6.22888 6.27490 6.44249 6.57309 7.01039 7.07835 7.11841 7.42567 7.52176 7.79775 8.11560 8.82884 9.09643 9.42825 10.94948 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.054708 B = 0.003565 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.686935 B = 7852.569974 C = 8100.243465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.045 3.955 3 N -0.533 5.533 4 C 0.045 3.955 5 C -0.148 4.148 6 C 0.142 3.858 7 C -0.028 4.028 8 C -0.042 4.042 9 N -0.271 5.271 10 C 0.113 3.887 11 C 0.015 3.985 12 C -0.531 4.531 13 H 0.061 0.939 14 C 0.062 3.938 15 N -0.886 5.886 16 Si 0.899 3.101 17 H -0.271 1.271 18 H -0.283 1.283 19 H -0.282 1.282 20 N -0.075 5.075 21 N -0.284 5.284 22 H 0.058 0.942 23 H 0.054 0.946 24 H 0.060 0.940 25 H 0.071 0.929 26 H 0.087 0.913 27 H 0.039 0.961 28 H 0.072 0.928 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.085 0.915 33 H 0.056 0.944 34 H 0.181 0.819 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.023 0.977 38 H 0.037 0.963 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.314 2.256 -18.859 20.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.083 4.083 3 N -0.257 5.257 4 C -0.082 4.082 5 C -0.205 4.205 6 C 0.013 3.987 7 C -0.168 4.168 8 C -0.195 4.195 9 N -0.064 5.064 10 C -0.007 4.007 11 C -0.023 4.023 12 C -0.570 4.570 13 H 0.079 0.921 14 C -0.141 4.141 15 N -0.524 5.524 16 Si 0.727 3.273 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.208 1.208 20 N -0.055 5.055 21 N -0.150 5.150 22 H 0.077 0.923 23 H 0.073 0.927 24 H 0.079 0.921 25 H 0.090 0.910 26 H 0.106 0.894 27 H 0.057 0.943 28 H 0.091 0.909 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.103 0.897 33 H 0.074 0.926 34 H 0.199 0.801 35 H 0.107 0.893 36 H 0.112 0.888 37 H 0.042 0.958 38 H 0.056 0.944 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.069 0.938 -17.917 19.284 hybrid contribution 0.327 1.270 0.210 1.328 sum -6.742 2.208 -17.707 19.075 Atomic orbital electron populations 1.22377 0.98406 1.02423 1.01547 1.22213 0.92745 0.89948 1.03356 1.62178 1.58894 1.02564 1.02071 1.22142 0.97279 0.97748 0.91066 1.21771 1.02056 1.00950 0.95752 1.20169 0.95019 0.97611 0.85898 1.21563 0.97356 0.95930 1.01942 1.23285 0.97393 1.01755 0.97085 1.47882 1.18473 1.15353 1.24678 1.22711 0.78469 1.02444 0.97036 1.19400 0.98373 0.99371 0.85153 1.20988 0.93442 1.50992 0.91572 0.92056 1.25007 0.96694 0.94801 0.97613 1.69989 1.26741 1.48708 1.06970 0.86424 0.83269 0.77934 0.79714 1.19572 1.20864 1.20792 1.78300 0.97999 1.09894 1.19278 1.74970 1.16118 1.17759 1.06154 0.92314 0.92723 0.92122 0.91014 0.89422 0.94304 0.90949 0.92576 0.91916 0.92717 0.89667 0.92622 0.80146 0.89289 0.88832 0.95848 0.94432 0.92655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.88 9.12 37.16 0.34 -1.55 16 2 C 0.05 0.53 5.63 -3.83 -0.02 0.51 16 3 N -0.53 -6.15 4.63 -236.08 -1.09 -7.25 16 4 C 0.05 0.40 5.30 -3.82 -0.02 0.38 16 5 C -0.15 -1.18 9.83 37.16 0.37 -0.82 16 6 C 0.14 1.76 5.46 -4.98 -0.03 1.73 16 7 C -0.03 -0.46 6.28 -82.78 -0.52 -0.98 16 8 C -0.04 -0.68 11.50 -17.05 -0.20 -0.88 16 9 N -0.27 -5.22 3.44 -61.26 -0.21 -5.43 16 10 C 0.11 2.18 6.39 -4.04 -0.03 2.16 16 11 C 0.01 0.37 5.10 -27.89 -0.14 0.23 16 12 C -0.53 -14.18 9.11 -34.44 -0.31 -14.49 16 13 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 14 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 15 N -0.89 -26.12 13.29 55.43 0.74 -25.38 16 16 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 17 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 N -0.07 -1.61 12.91 60.35 0.78 -0.83 16 21 N -0.28 -5.57 11.52 33.29 0.38 -5.19 16 22 H 0.06 0.63 6.28 -51.93 -0.33 0.30 16 23 H 0.05 0.48 6.48 -51.93 -0.34 0.14 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.07 0.78 6.74 -51.93 -0.35 0.43 16 26 H 0.09 1.27 6.74 -51.93 -0.35 0.92 16 27 H 0.04 0.33 5.97 -51.93 -0.31 0.02 16 28 H 0.07 0.58 7.83 -51.93 -0.41 0.18 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.45 6.68 -51.93 -0.35 0.10 16 32 H 0.08 0.87 7.73 -51.93 -0.40 0.46 16 33 H 0.06 0.69 6.08 -51.93 -0.32 0.37 16 34 H 0.18 2.19 8.06 -52.49 -0.42 1.77 16 35 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 36 H 0.09 1.56 8.07 -51.93 -0.42 1.14 16 37 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.04 1.04 8.12 -51.93 -0.42 0.62 16 39 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 317.36 15.07 4.78 4.78 Total: -1.00 -30.90 317.36 -6.36 -37.26 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -6.06 Total: -1.67 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: -0.66 Total: -12.09 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: 0.60 Total: -44.08 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.90 -6.36 -37.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600968696.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.338 kcal (2) G-P(sol) polarization free energy of solvation -30.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds