Wall clock time and date at job start Sun Mar 29 2020 23:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46900 * 109.47199 * 2 1 4 4 C 1.46901 * 111.00416 * 305.52642 * 3 2 1 5 5 C 1.53001 * 109.46833 * 293.95485 * 4 3 2 6 6 C 1.46901 * 110.99903 * 69.48227 * 3 2 1 7 7 C 1.50693 * 109.47131 * 75.96605 * 6 3 2 8 8 C 1.35349 * 126.75237 * 94.87091 * 7 6 3 9 9 N 1.35311 * 106.17738 * 179.84962 * 8 7 6 10 10 C 1.46504 * 125.87243 * 180.11754 * 9 8 7 11 11 C 1.52992 * 109.47402 * 125.32417 * 10 9 8 12 12 C 1.50698 * 109.47291 * 180.02562 * 11 10 9 13 13 H 1.08003 * 120.00055 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00395 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99811 * 359.97438 * 14 12 11 16 16 Si 1.86792 * 120.00288 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47149 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47552 * 119.99613 * 16 14 12 19 19 H 1.48496 * 109.47444 * 239.99912 * 16 14 12 20 20 N 1.28717 * 108.26397 * 0.41464 * 9 8 7 21 21 N 1.28635 * 110.17727 * 359.73356 * 20 9 8 22 22 H 1.09005 * 109.46730 * 304.68147 * 1 2 3 23 23 H 1.09004 * 109.47400 * 64.67879 * 1 2 3 24 24 H 1.08993 * 109.47294 * 184.68203 * 1 2 3 25 25 H 1.09001 * 109.47401 * 240.00420 * 2 1 3 26 26 H 1.08998 * 109.47414 * 119.99898 * 2 1 3 27 27 H 1.08994 * 109.46827 * 53.95102 * 4 3 2 28 28 H 1.08998 * 109.47569 * 173.95334 * 4 3 2 29 29 H 1.09002 * 109.46921 * 179.97438 * 5 4 3 30 30 H 1.09003 * 109.47369 * 299.99425 * 5 4 3 31 31 H 1.08998 * 109.47448 * 60.00073 * 5 4 3 32 32 H 1.08998 * 109.47203 * 195.96803 * 6 3 2 33 33 H 1.08998 * 109.47106 * 315.96068 * 6 3 2 34 34 H 1.08002 * 126.91505 * 359.97438 * 8 7 6 35 35 H 1.09005 * 109.46999 * 245.32731 * 10 9 8 36 36 H 1.08999 * 109.46931 * 5.32182 * 10 9 8 37 37 H 1.09005 * 109.47300 * 300.00130 * 11 10 9 38 38 H 1.08999 * 109.47270 * 59.99971 * 11 10 9 39 39 H 0.97000 * 119.99731 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.4439 2.1471 -1.1161 5 6 1.9582 1.5791 -2.4404 6 6 1.7419 2.0415 1.2844 7 6 2.7160 1.5469 2.3224 8 6 3.8818 2.1324 2.6832 9 7 4.4174 1.3451 3.6445 10 6 5.6843 1.5819 4.3410 11 6 5.4427 1.5870 5.8517 12 6 6.7459 1.8313 6.5680 13 1 7.6556 1.9687 6.0023 14 6 6.7771 1.8783 7.9456 15 7 5.6694 1.7105 8.6346 16 14 8.3924 2.1804 8.8336 17 1 9.4832 2.3354 7.8378 18 1 8.2859 3.4174 9.6482 19 1 8.6928 1.0280 9.7206 20 7 3.6255 0.3488 3.8376 21 7 2.6014 0.4397 3.0645 22 1 -0.3633 0.5848 0.8451 23 1 -0.3634 0.4395 -0.9289 24 1 -0.3633 -1.0242 0.0839 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 0.3570 2.0706 -1.0857 28 1 1.7370 3.1934 -1.0312 29 1 1.5306 2.1443 -3.2686 30 1 3.0451 1.6555 -2.4709 31 1 1.6650 0.5328 -2.5254 32 1 1.8481 3.1204 1.1715 33 1 0.7251 1.8076 1.5997 34 1 4.2994 3.0455 2.2854 35 1 6.3910 0.7912 4.0887 36 1 6.0925 2.5452 4.0350 37 1 4.7361 2.3777 6.1040 38 1 5.0345 0.6238 6.1576 39 1 5.6914 1.7432 9.6038 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600968696.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:55:21 Heat of formation + Delta-G solvation = 69.126791 kcal Electronic energy + Delta-G solvation = -18295.810297 eV Core-core repulsion = 15467.653212 eV Total energy + Delta-G solvation = -2828.157085 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -44.09647 -39.30824 -36.67123 -34.78787 -33.15202 -32.02646 -31.69100 -30.10435 -27.38240 -26.50782 -24.77660 -24.21039 -22.65754 -21.64073 -20.61120 -18.87657 -17.57537 -17.44981 -16.90001 -16.69657 -16.37338 -15.85752 -15.31073 -15.12250 -14.83844 -14.34187 -13.83231 -13.67632 -13.62400 -13.10074 -13.01946 -12.94356 -12.84097 -12.57468 -12.37789 -12.25100 -12.19846 -11.96387 -11.84754 -11.60406 -11.46710 -11.41092 -10.82273 -10.63619 -10.08662 -9.17017 -8.26421 -6.40679 0.82246 1.41907 1.42940 1.55770 1.57966 1.66430 2.39789 3.09043 3.12772 3.56274 3.79876 4.03451 4.10815 4.17922 4.27667 4.29118 4.40173 4.47609 4.51880 4.57875 4.59696 4.69922 4.76117 4.87793 5.04459 5.06599 5.16584 5.21515 5.28612 5.29443 5.32348 5.47618 5.50583 5.62677 5.81810 6.06401 6.11853 6.26404 6.76138 7.30617 7.67125 8.86469 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.054708 B = 0.003565 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.686935 B = 7852.569974 C = 8100.243465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.047 3.953 3 N -0.542 5.542 4 C 0.045 3.955 5 C -0.145 4.145 6 C 0.145 3.855 7 C -0.030 4.030 8 C -0.031 4.031 9 N -0.281 5.281 10 C 0.126 3.874 11 C 0.024 3.976 12 C -0.542 4.542 13 H 0.081 0.919 14 C -0.001 4.001 15 N -0.934 5.934 16 Si 0.975 3.025 17 H -0.252 1.252 18 H -0.279 1.279 19 H -0.283 1.283 20 N -0.132 5.132 21 N -0.303 5.303 22 H 0.049 0.951 23 H 0.072 0.928 24 H 0.061 0.939 25 H 0.078 0.922 26 H 0.053 0.947 27 H 0.047 0.953 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.053 0.947 31 H 0.049 0.951 32 H 0.115 0.885 33 H 0.053 0.947 34 H 0.226 0.774 35 H 0.097 0.903 36 H 0.130 0.870 37 H -0.008 1.008 38 H -0.005 1.005 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.319 4.055 -20.984 22.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.081 4.081 3 N -0.266 5.266 4 C -0.082 4.082 5 C -0.202 4.202 6 C 0.016 3.984 7 C -0.171 4.171 8 C -0.184 4.184 9 N -0.074 5.074 10 C 0.007 3.993 11 C -0.014 4.014 12 C -0.580 4.580 13 H 0.099 0.901 14 C -0.199 4.199 15 N -0.574 5.574 16 Si 0.799 3.201 17 H -0.175 1.175 18 H -0.205 1.205 19 H -0.209 1.209 20 N -0.111 5.111 21 N -0.169 5.169 22 H 0.068 0.932 23 H 0.090 0.910 24 H 0.080 0.920 25 H 0.097 0.903 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.104 0.896 29 H 0.092 0.908 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.133 0.867 33 H 0.071 0.929 34 H 0.243 0.757 35 H 0.115 0.885 36 H 0.148 0.852 37 H 0.011 0.989 38 H 0.013 0.987 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.077 2.723 -20.065 21.142 hybrid contribution -0.067 0.722 0.776 1.061 sum -6.144 3.444 -19.290 20.536 Atomic orbital electron populations 1.22300 0.97116 1.02566 1.02013 1.22115 0.93791 0.90202 1.01984 1.62151 1.59546 1.02549 1.02385 1.22247 0.97676 0.98096 0.90196 1.21753 1.01542 1.00989 0.95936 1.20295 0.93691 0.99090 0.85373 1.22291 0.98171 0.94697 1.01927 1.24055 0.96823 1.02167 0.95368 1.47847 1.18335 1.15691 1.25510 1.22465 0.78917 1.04724 0.93204 1.19139 0.97035 0.95799 0.89446 1.21496 0.94558 1.49840 0.92112 0.90094 1.26060 1.00451 0.94529 0.98859 1.70149 1.29525 1.50403 1.07282 0.85252 0.78874 0.77551 0.78466 1.17521 1.20507 1.20924 1.78297 0.99484 1.11920 1.21384 1.74925 1.15908 1.19445 1.06581 0.93207 0.90958 0.92002 0.90327 0.92814 0.93529 0.89553 0.90755 0.92793 0.93154 0.86720 0.92919 0.75735 0.88458 0.85181 0.98936 0.98686 0.92663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.41 9.12 71.98 0.66 -2.75 16 2 C 0.05 1.07 5.63 86.30 0.49 1.55 16 3 N -0.54 -11.43 4.63 -900.83 -4.17 -15.60 16 4 C 0.04 0.66 5.30 86.30 0.46 1.12 16 5 C -0.14 -1.93 9.83 71.98 0.71 -1.22 16 6 C 0.14 3.28 5.46 85.55 0.47 3.75 16 7 C -0.03 -0.96 6.28 41.59 0.26 -0.70 16 8 C -0.03 -0.94 11.50 83.49 0.96 0.02 16 9 N -0.28 -10.74 3.44 -347.73 -1.20 -11.94 16 10 C 0.13 4.79 6.39 86.38 0.55 5.34 16 11 C 0.02 1.22 5.10 29.84 0.15 1.38 16 12 C -0.54 -28.86 9.11 25.60 0.23 -28.63 16 13 H 0.08 3.90 7.74 -2.91 -0.02 3.88 16 14 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 15 N -0.93 -56.64 13.29 21.45 0.28 -56.36 16 16 Si 0.97 42.49 29.54 68.60 2.03 44.52 16 17 H -0.25 -10.10 7.11 99.48 0.71 -9.39 16 18 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 19 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 20 N -0.13 -5.88 12.91 37.02 0.48 -5.40 16 21 N -0.30 -12.18 11.52 -48.60 -0.56 -12.74 16 22 H 0.05 1.02 6.28 -2.38 -0.01 1.01 16 23 H 0.07 1.10 6.48 -2.39 -0.02 1.08 16 24 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.08 1.63 6.74 -2.39 -0.02 1.62 16 26 H 0.05 1.59 6.74 -2.39 -0.02 1.58 16 27 H 0.05 0.63 5.97 -2.39 -0.01 0.62 16 28 H 0.09 1.06 7.83 -2.39 -0.02 1.04 16 29 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.05 0.71 6.68 -2.39 -0.02 0.70 16 32 H 0.11 1.91 7.73 -2.39 -0.02 1.89 16 33 H 0.05 1.23 6.08 -2.39 -0.01 1.22 16 34 H 0.23 4.48 8.06 -2.91 -0.02 4.45 16 35 H 0.10 3.51 8.14 -2.38 -0.02 3.50 16 36 H 0.13 3.97 8.07 -2.39 -0.02 3.95 16 37 H -0.01 -0.44 8.14 -2.38 -0.02 -0.46 16 38 H -0.01 -0.31 8.12 -2.39 -0.02 -0.33 16 39 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -70.10 317.36 3.28 -66.82 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: 1.02 Total: 10.41 kcal Atomic # 6 Polarization: -25.11 SS G_CDS: 5.40 Total: -19.71 kcal Atomic # 7 Polarization: -96.87 SS G_CDS: -5.16 Total: -102.03 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -70.10 3.28 -66.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600968696.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.947 kcal (2) G-P(sol) polarization free energy of solvation -70.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds